Wall clock time and date at job start Tue Mar 31 2020 06:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.70375 * 2 1 4 4 C 1.53188 * 109.58966 * 120.36163 * 2 1 3 5 5 C 1.53037 * 109.31710 * 174.42250 * 4 2 1 6 6 H 1.09010 * 109.44972 * 58.64012 * 5 4 2 7 7 N 1.46491 * 109.46532 * 178.61091 * 5 4 2 8 8 C 1.36936 * 120.00263 * 205.06857 * 7 5 4 9 9 H 1.08004 * 120.00096 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99871 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99675 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00363 * 359.97438 * 10 8 7 13 13 H 1.48494 * 109.47127 * 270.00157 * 12 10 8 14 14 H 1.48493 * 109.47257 * 149.99907 * 12 10 8 15 15 H 1.48508 * 109.46791 * 29.99926 * 12 10 8 16 16 C 1.53040 * 109.53706 * 298.63491 * 5 4 2 17 17 C 1.53190 * 109.31480 * 61.35914 * 16 5 4 18 18 N 1.46925 * 108.77880 * 305.36845 * 17 16 5 19 19 C 1.34777 * 120.63272 * 233.58778 * 18 17 16 20 20 O 1.21279 * 120.00072 * 174.94790 * 19 18 17 21 21 C 1.50696 * 119.99911 * 354.94480 * 19 18 17 22 22 C 1.53004 * 109.47106 * 180.02562 * 21 19 18 23 23 C 1.52996 * 109.46936 * 60.00085 * 22 21 19 24 24 C 1.52997 * 109.46956 * 180.02562 * 22 21 19 25 25 C 1.52994 * 109.46918 * 300.00014 * 22 21 19 26 26 H 1.08996 * 109.46853 * 175.99354 * 1 2 3 27 27 H 1.09002 * 109.46863 * 295.98813 * 1 2 3 28 28 H 1.08997 * 109.47347 * 55.98810 * 1 2 3 29 29 H 1.09000 * 109.49947 * 54.46310 * 4 2 1 30 30 H 1.09010 * 109.49218 * 294.36884 * 4 2 1 31 31 H 0.96999 * 119.99853 * 25.06834 * 7 5 4 32 32 H 0.97001 * 119.99461 * 180.02562 * 11 10 8 33 33 H 1.09006 * 109.50107 * 181.31601 * 16 5 4 34 34 H 1.09007 * 109.49739 * 301.37835 * 16 5 4 35 35 H 1.09001 * 109.58623 * 65.15923 * 17 16 5 36 36 H 1.09001 * 109.59126 * 185.43985 * 17 16 5 37 37 H 1.09003 * 109.47324 * 300.00155 * 21 19 18 38 38 H 1.09000 * 109.47078 * 60.00379 * 21 19 18 39 39 H 1.09003 * 109.47285 * 60.00252 * 23 22 21 40 40 H 1.09001 * 109.46777 * 179.97438 * 23 22 21 41 41 H 1.08996 * 109.47549 * 300.00146 * 23 22 21 42 42 H 1.09000 * 109.47189 * 60.00123 * 24 22 21 43 43 H 1.09001 * 109.47119 * 179.97438 * 24 22 21 44 44 H 1.08997 * 109.47379 * 300.00285 * 24 22 21 45 45 H 1.09005 * 109.47584 * 60.00202 * 25 22 21 46 46 H 1.09000 * 109.47157 * 179.97438 * 25 22 21 47 47 H 1.09000 * 109.47316 * 299.99932 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5675 -0.8481 1.1700 6 1 4.0060 0.1474 1.0990 7 7 4.0653 -1.5158 2.3751 8 6 5.3494 -1.2977 2.7980 9 1 5.9953 -0.6337 2.2427 10 6 5.8208 -1.9302 3.9402 11 7 7.0552 -1.7209 4.3463 12 14 4.7035 -3.0781 4.9010 13 1 3.9686 -2.3042 5.9335 14 1 5.5210 -4.1290 5.5586 15 1 3.7324 -3.7138 3.9745 16 6 3.9569 -1.6657 -0.0637 17 6 3.4650 -0.9469 -1.3238 18 7 2.0225 -0.6995 -1.1946 19 6 1.1674 -1.1061 -2.1537 20 8 -0.0281 -0.9785 -1.9940 21 6 1.6966 -1.7193 -3.4244 22 6 0.5264 -2.0899 -4.3378 23 6 -0.2761 -0.8315 -4.6744 24 6 1.0638 -2.7129 -5.6277 25 6 -0.3785 -3.0962 -3.6243 26 1 -0.3633 -1.0251 -0.0718 27 1 -0.3633 0.4503 0.9238 28 1 -0.3634 0.5748 -0.8518 29 1 1.6030 -1.7254 1.2912 30 1 1.7661 -0.1669 2.1368 31 1 3.4853 -2.1125 2.8736 32 1 7.3847 -2.1631 5.1443 33 1 5.0413 -1.7696 -0.1039 34 1 3.4988 -2.6531 -0.0052 35 1 3.9903 0.0021 -1.4318 36 1 3.6540 -1.5706 -2.1976 37 1 2.3410 -1.0021 -3.9330 38 1 2.2687 -2.6155 -3.1846 39 1 0.3686 -0.1145 -5.1828 40 1 -1.1095 -1.0955 -5.3255 41 1 -0.6589 -0.3880 -3.7553 42 1 1.6353 -3.6095 -5.3875 43 1 0.2301 -2.9774 -6.2782 44 1 1.7088 -1.9963 -6.1362 45 1 -0.7614 -2.6528 -2.7051 46 1 -1.2124 -3.3599 -4.2748 47 1 0.1933 -3.9927 -3.3845 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044457784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:42 Heat of formation + Delta-G solvation = -41.904885 kcal Electronic energy + Delta-G solvation = -23783.698424 eV Core-core repulsion = 20580.047177 eV Total energy + Delta-G solvation = -3203.651247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70981 -39.27590 -37.39676 -36.15507 -34.06152 -33.69759 -31.56574 -29.27565 -28.09574 -28.04307 -27.97219 -25.87575 -24.23621 -23.10521 -21.68418 -20.51932 -19.62455 -19.26781 -17.72629 -16.94646 -16.72020 -16.55195 -15.94465 -15.43762 -15.34277 -15.26518 -14.96579 -14.69575 -14.63483 -14.34000 -13.78952 -13.64175 -13.34664 -13.16661 -13.00918 -12.95583 -12.84990 -12.72923 -12.64252 -12.47142 -12.18150 -12.07184 -12.01670 -11.93146 -11.80232 -11.69361 -11.52529 -11.48096 -11.34189 -10.93684 -9.72551 -9.46805 -9.30594 -8.01984 -5.34751 1.37575 1.39476 1.46698 1.75411 2.07861 2.48095 3.29411 3.48468 3.61921 3.79764 3.91488 3.99012 4.03593 4.09371 4.25077 4.31828 4.36338 4.57540 4.60911 4.62564 4.65902 4.70332 4.70500 4.81086 4.87560 4.90125 4.91322 5.01657 5.03168 5.05086 5.13176 5.18356 5.22977 5.26476 5.31206 5.40517 5.45857 5.49250 5.59241 5.67694 5.77397 5.79434 6.22456 6.59039 7.08158 7.36133 7.85040 8.03153 9.19477 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.003909 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.179889 B = 7160.828831 C = 7406.031465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.150 3.850 3 H 0.079 0.921 4 C -0.127 4.127 5 C 0.176 3.824 6 H 0.047 0.953 7 N -0.753 5.753 8 C -0.224 4.224 9 H 0.062 0.938 10 C -0.063 4.063 11 N -0.984 5.984 12 Si 0.951 3.049 13 H -0.280 1.280 14 H -0.297 1.297 15 H -0.257 1.257 16 C -0.142 4.142 17 C 0.116 3.884 18 N -0.609 5.609 19 C 0.510 3.490 20 O -0.548 6.548 21 C -0.132 4.132 22 C -0.050 4.050 23 C -0.149 4.149 24 C -0.138 4.138 25 C -0.151 4.151 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.362 0.638 32 H 0.257 0.743 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.133 0.459 -19.981 24.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.046 3.954 3 H 0.097 0.903 4 C -0.166 4.166 5 C 0.068 3.932 6 H 0.066 0.934 7 N -0.396 5.396 8 C -0.355 4.355 9 H 0.080 0.920 10 C -0.254 4.254 11 N -0.634 5.634 12 Si 0.779 3.221 13 H -0.207 1.207 14 H -0.224 1.224 15 H -0.181 1.181 16 C -0.183 4.183 17 C -0.007 4.007 18 N -0.342 5.342 19 C 0.301 3.699 20 O -0.428 6.428 21 C -0.172 4.172 22 C -0.050 4.050 23 C -0.206 4.206 24 C -0.196 4.196 25 C -0.208 4.208 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.195 0.805 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.547 0.624 -19.893 24.652 hybrid contribution 0.056 -0.795 1.283 1.511 sum -14.491 -0.170 -18.609 23.587 Atomic orbital electron populations 1.22029 0.92444 1.02575 1.00564 1.21206 0.95520 0.95233 0.83417 0.90333 1.22204 0.95174 1.00943 0.98323 1.20396 0.92493 0.94784 0.85542 0.93443 1.42856 1.11629 1.55237 1.29862 1.19038 0.88944 1.21290 1.06254 0.92038 1.25430 0.97590 1.02600 0.99809 1.69873 1.17348 1.49205 1.27010 0.85474 0.78601 0.78993 0.79061 1.20661 1.22410 1.18142 1.22430 1.00994 0.99449 0.95443 1.21824 0.79144 1.01336 0.98428 1.48333 1.07990 1.57652 1.20226 1.21092 0.86178 0.77428 0.85222 1.90625 1.16353 1.56145 1.79673 1.21916 0.99730 1.02658 0.92851 1.20269 0.94061 0.95909 0.94810 1.22039 0.99682 0.96917 1.01939 1.21859 1.01153 1.00804 0.95736 1.22057 0.99295 0.98081 1.01354 0.92668 0.93343 0.91724 0.92515 0.90803 0.80498 0.93438 0.91939 0.92902 0.90236 0.87266 0.87217 0.88026 0.92829 0.93068 0.91870 0.92190 0.92311 0.91709 0.92007 0.92965 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 7.59 71.98 0.55 -2.45 16 2 C 0.15 3.79 3.49 44.97 0.16 3.94 16 3 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 4 C -0.13 -3.78 4.84 30.67 0.15 -3.63 16 5 C 0.18 6.21 2.73 45.02 0.12 6.33 16 6 H 0.05 1.76 8.08 -2.38 -0.02 1.74 16 7 N -0.75 -34.11 4.92 -322.82 -1.59 -35.70 16 8 C -0.22 -12.41 10.41 84.03 0.87 -11.54 16 9 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 10 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 11 N -0.98 -62.38 13.97 21.65 0.30 -62.07 16 12 Si 0.95 45.44 27.74 68.60 1.90 47.34 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 14 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 15 H -0.26 -11.21 6.52 99.48 0.65 -10.56 16 16 C -0.14 -4.29 5.66 30.67 0.17 -4.11 16 17 C 0.12 2.46 6.32 86.36 0.55 3.01 16 18 N -0.61 -14.10 2.97 -795.02 -2.36 -16.46 16 19 C 0.51 11.54 7.02 87.66 0.62 12.15 16 20 O -0.55 -14.64 6.75 -3.03 -0.02 -14.66 16 21 C -0.13 -2.16 3.17 29.85 0.09 -2.06 16 22 C -0.05 -0.84 0.77 -52.18 -0.04 -0.88 16 23 C -0.15 -2.70 8.18 71.98 0.59 -2.11 16 24 C -0.14 -1.76 8.47 71.98 0.61 -1.15 16 25 C -0.15 -2.97 8.17 71.98 0.59 -2.38 16 26 H 0.05 1.57 6.73 -2.39 -0.02 1.55 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.69 6.77 -2.39 -0.02 1.68 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.36 16.12 5.66 -92.71 -0.52 15.60 16 32 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.11 1.71 5.97 -2.39 -0.01 1.70 16 37 H 0.11 1.39 8.11 -2.39 -0.02 1.37 16 38 H 0.10 1.48 7.48 -2.39 -0.02 1.46 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 40 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 1.46 5.51 -2.39 -0.01 1.45 16 42 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.06 1.53 5.51 -2.38 -0.01 1.52 16 46 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -66.16 349.59 4.07 -62.09 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.34 Total: 27.54 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.49 Total: -8.06 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -3.65 Total: -114.24 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.02 Total: -14.66 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Total: -66.16 4.07 -62.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044457784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.184 kcal (2) G-P(sol) polarization free energy of solvation -66.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds