Wall clock time and date at job start Tue Mar 31 2020 06:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.58706 * 2 1 4 4 C 1.53193 * 109.70358 * 239.64691 * 2 1 3 5 5 C 1.53044 * 109.31355 * 185.50803 * 4 2 1 6 6 H 1.08994 * 109.46187 * 301.36035 * 5 4 2 7 7 N 1.46499 * 109.45835 * 181.38098 * 5 4 2 8 8 C 1.36939 * 119.99546 * 154.99931 * 7 5 4 9 9 H 1.08003 * 120.00296 * 0.02562 * 8 7 5 10 10 C 1.38821 * 119.99885 * 180.02562 * 8 7 5 11 11 N 1.31611 * 119.99863 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99908 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47193 * 60.00291 * 12 10 8 14 14 H 1.48502 * 109.47392 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47403 * 300.00161 * 12 10 8 16 16 C 1.53038 * 109.53610 * 61.36650 * 5 4 2 17 17 C 1.53625 * 109.24351 * 298.51249 * 16 5 4 18 18 N 1.46920 * 108.54484 * 54.85037 * 17 16 5 19 19 C 1.34783 * 120.62447 * 126.37078 * 18 17 16 20 20 O 1.21281 * 119.99517 * 173.95294 * 19 18 17 21 21 C 1.50695 * 120.00452 * 353.94922 * 19 18 17 22 22 C 1.52994 * 109.47489 * 179.97438 * 21 19 18 23 23 C 1.53006 * 109.47158 * 60.00140 * 22 21 19 24 24 C 1.53001 * 109.47188 * 300.00470 * 22 21 19 25 25 C 1.52996 * 109.47374 * 180.02562 * 22 21 19 26 26 H 1.08996 * 109.46834 * 305.46704 * 1 2 3 27 27 H 1.08999 * 109.47149 * 65.46814 * 1 2 3 28 28 H 1.08994 * 109.47295 * 185.46789 * 1 2 3 29 29 H 1.09001 * 109.49651 * 305.46157 * 4 2 1 30 30 H 1.09004 * 109.50084 * 65.55480 * 4 2 1 31 31 H 0.97001 * 120.00511 * 335.00345 * 7 5 4 32 32 H 0.97005 * 120.00283 * 179.97438 * 11 10 8 33 33 H 1.09003 * 109.50019 * 58.58627 * 16 5 4 34 34 H 1.08998 * 109.49749 * 178.68316 * 16 5 4 35 35 H 1.09003 * 109.73735 * 295.11754 * 17 16 5 36 36 H 1.08995 * 109.66728 * 174.55667 * 17 16 5 37 37 H 1.09005 * 109.47044 * 59.99611 * 21 19 18 38 38 H 1.09000 * 109.47226 * 300.00263 * 21 19 18 39 39 H 1.09002 * 109.46960 * 300.00400 * 23 22 21 40 40 H 1.08994 * 109.47438 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.46802 * 60.00015 * 23 22 21 42 42 H 1.09006 * 109.46983 * 179.97438 * 24 22 21 43 43 H 1.09000 * 109.46933 * 299.99420 * 24 22 21 44 44 H 1.08992 * 109.47125 * 59.99491 * 24 22 21 45 45 H 1.09008 * 109.47068 * 300.00084 * 25 22 21 46 46 H 1.09000 * 109.47254 * 60.00269 * 25 22 21 47 47 H 1.09006 * 109.47465 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 3.5706 -0.8443 -1.1674 6 1 4.0071 0.1519 -1.0962 7 7 4.0710 -1.5116 -2.3718 8 6 5.3556 -1.2921 -2.7924 9 1 5.9999 -0.6274 -2.2361 10 6 5.8297 -1.9240 -3.9340 11 7 5.0443 -2.7336 -4.6122 12 14 7.5821 -1.6252 -4.5073 13 1 8.5295 -2.0469 -3.4443 14 1 7.8405 -2.4116 -5.7402 15 1 7.7699 -0.1801 -4.7930 16 6 3.9602 -1.6608 0.0669 17 6 3.4659 -0.9377 1.3290 18 7 2.0226 -0.6981 1.1953 19 6 1.1672 -1.1061 2.1536 20 8 -0.0063 -0.8072 2.0861 21 6 1.6687 -1.9336 3.3088 22 6 0.5043 -2.2600 4.2460 23 6 -0.5617 -3.0464 3.4802 24 6 -0.1037 -0.9599 4.7759 25 6 1.0136 -3.0997 5.4191 26 1 -0.3633 0.5963 0.8370 27 1 -0.3633 0.4267 -0.9349 28 1 -0.3633 -1.0229 0.0979 29 1 1.6079 -1.7256 -1.2906 30 1 1.7688 -0.1672 -2.1366 31 1 3.4925 -2.1088 -2.8713 32 1 5.3754 -3.1749 -5.4101 33 1 3.5036 -2.6489 0.0085 34 1 5.0446 -1.7625 0.1084 35 1 3.9860 0.0143 1.4353 36 1 3.6538 -1.5586 2.2049 37 1 2.4278 -1.3732 3.8546 38 1 2.1022 -2.8597 2.9312 39 1 -0.9245 -2.4479 2.6446 40 1 -1.3915 -3.2786 4.1477 41 1 -0.1285 -3.9727 3.1026 42 1 -0.9337 -1.1925 5.4433 43 1 0.6556 -0.3997 5.3215 44 1 -0.4665 -0.3614 3.9404 45 1 1.4470 -4.0260 5.0418 46 1 1.7728 -2.5391 5.9646 47 1 0.1839 -3.3326 6.0866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044457785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:46 Heat of formation + Delta-G solvation = -29.324592 kcal Electronic energy + Delta-G solvation = -23727.161717 eV Core-core repulsion = 20524.055993 eV Total energy + Delta-G solvation = -3203.105725 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.63780 -38.06222 -36.30587 -34.48087 -32.75492 -31.91835 -29.43536 -28.12016 -27.26517 -27.19708 -26.84257 -24.25825 -22.91626 -21.95115 -20.18091 -19.29288 -18.44549 -17.13043 -16.72672 -15.93248 -15.38395 -14.86622 -14.59166 -14.38947 -14.27428 -13.80975 -13.70260 -13.46789 -13.30186 -12.76841 -12.71967 -12.25460 -12.14864 -12.09709 -11.98700 -11.77757 -11.57504 -11.35127 -11.26672 -10.95642 -10.90350 -10.81273 -10.78634 -10.70134 -10.67791 -10.41866 -10.28030 -9.85478 -9.70861 -8.92512 -8.70439 -8.33417 -6.99999 -5.79432 -3.08762 2.74896 3.13496 3.41307 3.45948 3.47055 4.54475 4.56785 4.60274 4.76147 5.01705 5.11591 5.18293 5.32089 5.38376 5.39330 5.42987 5.48965 5.50906 5.55217 5.58161 5.63622 5.70450 5.80114 5.83988 5.85529 5.92024 6.02688 6.04190 6.06497 6.13442 6.18316 6.27142 6.37884 6.42540 6.45283 6.47186 6.55206 6.60311 6.76049 6.92293 7.04851 7.63516 7.65877 8.37935 8.38801 9.49903 10.07574 10.42275 11.43049 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029183 B = 0.003712 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.239959 B = 7542.052265 C = 7947.044608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.147 3.853 3 H 0.068 0.932 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.150 4.150 17 C 0.106 3.894 18 N -0.604 5.604 19 C 0.516 3.484 20 O -0.533 6.533 21 C -0.135 4.135 22 C -0.050 4.050 23 C -0.153 4.153 24 C -0.152 4.152 25 C -0.142 4.142 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.384 0.616 32 H 0.256 0.744 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.047 0.953 43 H 0.043 0.957 44 H 0.085 0.915 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.230 2.532 18.111 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.043 3.957 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.192 4.192 17 C -0.017 4.017 18 N -0.338 5.338 19 C 0.305 3.695 20 O -0.412 6.412 21 C -0.175 4.175 22 C -0.051 4.051 23 C -0.210 4.210 24 C -0.209 4.209 25 C -0.200 4.200 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.217 0.783 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.655 2.740 17.996 20.156 hybrid contribution 1.163 -0.272 -0.543 1.312 sum -7.492 2.468 17.453 19.152 Atomic orbital electron populations 1.22176 0.92913 1.03369 1.00662 1.21276 0.95348 0.95063 0.83964 0.91435 1.22288 0.97505 1.00901 0.96623 1.20159 0.90933 0.94934 0.87114 0.93536 1.42427 1.12919 1.54297 1.26783 1.19191 0.89141 1.22295 1.06618 0.91236 1.24746 0.98150 0.99799 0.98155 1.69650 1.35500 1.33450 1.19450 0.86284 0.84581 0.77482 0.77916 1.21277 1.21706 1.21256 1.22748 1.01632 0.99975 0.94808 1.21947 0.79660 1.00501 0.99595 1.48287 1.07558 1.57631 1.20292 1.20563 0.85990 0.79745 0.83165 1.90591 1.17110 1.56955 1.76538 1.21852 0.99480 1.00606 0.95524 1.20256 0.94404 0.96187 0.94234 1.22107 0.97820 0.99614 1.01470 1.22097 0.99950 0.96958 1.01874 1.21904 1.00895 0.99560 0.97601 0.90641 0.94021 0.91883 0.91892 0.90752 0.78270 0.93430 0.92200 0.90760 0.91545 0.90441 0.89376 0.89080 0.89576 0.93394 0.93634 0.93390 0.93798 0.89624 0.92715 0.92820 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 7.62 37.16 0.28 -1.59 16 2 C 0.15 2.10 3.48 -67.60 -0.24 1.86 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.13 -2.22 4.85 -26.61 -0.13 -2.35 16 5 C 0.18 3.39 2.73 -67.89 -0.19 3.20 16 6 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 7 N -0.72 -17.68 5.12 -53.38 -0.27 -17.95 16 8 C -0.24 -6.52 9.93 -15.05 -0.15 -6.67 16 9 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 10 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 11 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 12 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 16 C -0.15 -2.46 5.67 -26.39 -0.15 -2.61 16 17 C 0.11 1.33 6.38 -3.49 -0.02 1.31 16 18 N -0.60 -8.10 2.97 -164.97 -0.49 -8.59 16 19 C 0.52 6.71 6.92 -10.99 -0.08 6.63 16 20 O -0.53 -7.72 6.91 5.56 0.04 -7.68 16 21 C -0.13 -1.40 3.13 -27.89 -0.09 -1.48 16 22 C -0.05 -0.51 0.77 -154.51 -0.12 -0.63 16 23 C -0.15 -1.70 8.18 37.16 0.30 -1.39 16 24 C -0.15 -1.58 8.17 37.16 0.30 -1.28 16 25 C -0.14 -1.19 8.47 37.16 0.31 -0.88 16 26 H 0.07 1.09 6.54 -51.93 -0.34 0.75 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.96 6.95 -51.93 -0.36 0.60 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.80 5.93 -51.93 -0.31 0.49 16 37 H 0.09 0.79 7.70 -51.93 -0.40 0.39 16 38 H 0.09 0.91 7.94 -51.93 -0.41 0.50 16 39 H 0.09 1.14 5.51 -51.93 -0.29 0.85 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 1.07 5.51 -51.93 -0.29 0.79 16 45 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -29.30 352.80 -8.35 -37.65 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.60 Total: 7.73 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.04 Total: -6.32 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.04 Total: -53.68 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.04 Total: -7.68 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.30 -8.35 -37.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044457785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.323 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds