Wall clock time and date at job start Tue Mar 31 2020 06:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.58706 * 2 1 4 4 C 1.53193 * 109.70358 * 239.64691 * 2 1 3 5 5 C 1.53044 * 109.31355 * 185.50803 * 4 2 1 6 6 H 1.08994 * 109.46187 * 301.36035 * 5 4 2 7 7 N 1.46499 * 109.45835 * 181.38098 * 5 4 2 8 8 C 1.36939 * 119.99546 * 154.99931 * 7 5 4 9 9 H 1.08003 * 120.00296 * 0.02562 * 8 7 5 10 10 C 1.38821 * 119.99885 * 180.02562 * 8 7 5 11 11 N 1.31611 * 119.99863 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99908 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47193 * 60.00291 * 12 10 8 14 14 H 1.48502 * 109.47392 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47403 * 300.00161 * 12 10 8 16 16 C 1.53038 * 109.53610 * 61.36650 * 5 4 2 17 17 C 1.53625 * 109.24351 * 298.51249 * 16 5 4 18 18 N 1.46920 * 108.54484 * 54.85037 * 17 16 5 19 19 C 1.34783 * 120.62447 * 126.37078 * 18 17 16 20 20 O 1.21281 * 119.99517 * 173.95294 * 19 18 17 21 21 C 1.50695 * 120.00452 * 353.94922 * 19 18 17 22 22 C 1.52994 * 109.47489 * 179.97438 * 21 19 18 23 23 C 1.53006 * 109.47158 * 60.00140 * 22 21 19 24 24 C 1.53001 * 109.47188 * 300.00470 * 22 21 19 25 25 C 1.52996 * 109.47374 * 180.02562 * 22 21 19 26 26 H 1.08996 * 109.46834 * 305.46704 * 1 2 3 27 27 H 1.08999 * 109.47149 * 65.46814 * 1 2 3 28 28 H 1.08994 * 109.47295 * 185.46789 * 1 2 3 29 29 H 1.09001 * 109.49651 * 305.46157 * 4 2 1 30 30 H 1.09004 * 109.50084 * 65.55480 * 4 2 1 31 31 H 0.97001 * 120.00511 * 335.00345 * 7 5 4 32 32 H 0.97005 * 120.00283 * 179.97438 * 11 10 8 33 33 H 1.09003 * 109.50019 * 58.58627 * 16 5 4 34 34 H 1.08998 * 109.49749 * 178.68316 * 16 5 4 35 35 H 1.09003 * 109.73735 * 295.11754 * 17 16 5 36 36 H 1.08995 * 109.66728 * 174.55667 * 17 16 5 37 37 H 1.09005 * 109.47044 * 59.99611 * 21 19 18 38 38 H 1.09000 * 109.47226 * 300.00263 * 21 19 18 39 39 H 1.09002 * 109.46960 * 300.00400 * 23 22 21 40 40 H 1.08994 * 109.47438 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.46802 * 60.00015 * 23 22 21 42 42 H 1.09006 * 109.46983 * 179.97438 * 24 22 21 43 43 H 1.09000 * 109.46933 * 299.99420 * 24 22 21 44 44 H 1.08992 * 109.47125 * 59.99491 * 24 22 21 45 45 H 1.09008 * 109.47068 * 300.00084 * 25 22 21 46 46 H 1.09000 * 109.47254 * 60.00269 * 25 22 21 47 47 H 1.09006 * 109.47465 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 3.5706 -0.8443 -1.1674 6 1 4.0071 0.1519 -1.0962 7 7 4.0710 -1.5116 -2.3718 8 6 5.3556 -1.2921 -2.7924 9 1 5.9999 -0.6274 -2.2361 10 6 5.8297 -1.9240 -3.9340 11 7 5.0443 -2.7336 -4.6122 12 14 7.5821 -1.6252 -4.5073 13 1 8.5295 -2.0469 -3.4443 14 1 7.8405 -2.4116 -5.7402 15 1 7.7699 -0.1801 -4.7930 16 6 3.9602 -1.6608 0.0669 17 6 3.4659 -0.9377 1.3290 18 7 2.0226 -0.6981 1.1953 19 6 1.1672 -1.1061 2.1536 20 8 -0.0063 -0.8072 2.0861 21 6 1.6687 -1.9336 3.3088 22 6 0.5043 -2.2600 4.2460 23 6 -0.5617 -3.0464 3.4802 24 6 -0.1037 -0.9599 4.7759 25 6 1.0136 -3.0997 5.4191 26 1 -0.3633 0.5963 0.8370 27 1 -0.3633 0.4267 -0.9349 28 1 -0.3633 -1.0229 0.0979 29 1 1.6079 -1.7256 -1.2906 30 1 1.7688 -0.1672 -2.1366 31 1 3.4925 -2.1088 -2.8713 32 1 5.3754 -3.1749 -5.4101 33 1 3.5036 -2.6489 0.0085 34 1 5.0446 -1.7625 0.1084 35 1 3.9860 0.0143 1.4353 36 1 3.6538 -1.5586 2.2049 37 1 2.4278 -1.3732 3.8546 38 1 2.1022 -2.8597 2.9312 39 1 -0.9245 -2.4479 2.6446 40 1 -1.3915 -3.2786 4.1477 41 1 -0.1285 -3.9727 3.1026 42 1 -0.9337 -1.1925 5.4433 43 1 0.6556 -0.3997 5.3215 44 1 -0.4665 -0.3614 3.9404 45 1 1.4470 -4.0260 5.0418 46 1 1.7728 -2.5391 5.9646 47 1 0.1839 -3.3326 6.0866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044457785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:45 Heat of formation + Delta-G solvation = -45.579083 kcal Electronic energy + Delta-G solvation = -23727.866565 eV Core-core repulsion = 20524.055993 eV Total energy + Delta-G solvation = -3203.810572 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69149 -39.21837 -37.34960 -36.06148 -34.00981 -33.60058 -31.05137 -29.20234 -28.08186 -28.04056 -27.96381 -25.98414 -24.38493 -23.13220 -21.59400 -20.38253 -19.41363 -19.05554 -17.75700 -17.02320 -16.72268 -16.41722 -15.61209 -15.46023 -15.44269 -15.20659 -15.12248 -14.67036 -14.58396 -14.22355 -13.69637 -13.37766 -13.33155 -13.08437 -12.91898 -12.86728 -12.79705 -12.65381 -12.61103 -12.52330 -12.22020 -12.16096 -12.00268 -11.91208 -11.77187 -11.64455 -11.51222 -11.47885 -11.32704 -10.86874 -9.75468 -9.45662 -9.00240 -7.92533 -5.21434 1.48606 1.51198 1.57178 1.74924 2.09481 2.57499 3.40598 3.60454 3.75879 3.80113 3.94966 3.99392 4.07674 4.12788 4.27502 4.32436 4.37755 4.59463 4.63613 4.65684 4.68293 4.70579 4.74310 4.82262 4.87350 4.89430 4.91660 5.03223 5.04048 5.07970 5.13273 5.19333 5.23125 5.27785 5.32785 5.41431 5.44934 5.51272 5.56274 5.59566 5.67875 5.78910 6.28866 6.60194 7.34828 7.36321 8.10804 8.33871 9.30969 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029183 B = 0.003712 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.239959 B = 7542.052265 C = 7947.044608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.152 3.848 3 H 0.078 0.922 4 C -0.122 4.122 5 C 0.173 3.827 6 H 0.046 0.954 7 N -0.739 5.739 8 C -0.237 4.237 9 H 0.079 0.921 10 C -0.077 4.077 11 N -0.972 5.972 12 Si 0.971 3.029 13 H -0.276 1.276 14 H -0.299 1.299 15 H -0.278 1.278 16 C -0.140 4.140 17 C 0.115 3.885 18 N -0.609 5.609 19 C 0.510 3.490 20 O -0.549 6.549 21 C -0.132 4.132 22 C -0.050 4.050 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.138 4.138 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.370 0.630 32 H 0.249 0.751 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 3.209 20.545 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.048 3.952 3 H 0.096 0.904 4 C -0.161 4.161 5 C 0.065 3.935 6 H 0.064 0.936 7 N -0.378 5.378 8 C -0.369 4.369 9 H 0.097 0.903 10 C -0.269 4.269 11 N -0.623 5.623 12 Si 0.801 3.199 13 H -0.202 1.202 14 H -0.226 1.226 15 H -0.204 1.204 16 C -0.181 4.181 17 C -0.008 4.008 18 N -0.342 5.342 19 C 0.301 3.699 20 O -0.429 6.429 21 C -0.171 4.171 22 C -0.051 4.051 23 C -0.208 4.208 24 C -0.205 4.205 25 C -0.195 4.195 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.201 0.799 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.701 3.448 20.494 22.163 hybrid contribution 0.763 -0.453 -1.254 1.536 sum -6.938 2.995 19.240 20.671 Atomic orbital electron populations 1.22026 0.92677 1.02263 1.00889 1.21161 0.95380 0.95267 0.83378 0.90359 1.22137 0.95858 1.00337 0.97803 1.20414 0.92173 0.94686 0.86272 0.93585 1.42663 1.12145 1.54483 1.28506 1.19605 0.90116 1.21063 1.06093 0.90317 1.25551 1.02052 1.00452 0.98873 1.69819 1.37305 1.35221 1.19980 0.85241 0.80223 0.77387 0.77096 1.20191 1.22597 1.20432 1.22516 1.00932 0.99195 0.95443 1.21953 0.79011 1.01362 0.98428 1.48347 1.08043 1.57781 1.20070 1.21095 0.85701 0.79534 0.83591 1.90605 1.17918 1.57365 1.76995 1.21908 1.00072 1.00607 0.94546 1.20276 0.93970 0.96120 0.94715 1.22063 0.98533 0.99339 1.00905 1.22031 1.00436 0.96916 1.01112 1.21858 1.01343 0.99481 0.96831 0.90840 0.93377 0.93532 0.93308 0.91624 0.79923 0.94177 0.93588 0.91731 0.89958 0.87282 0.87046 0.88329 0.92035 0.92852 0.93593 0.93003 0.92686 0.91940 0.92329 0.91584 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.34 7.62 71.98 0.55 -2.79 16 2 C 0.15 4.17 3.48 44.97 0.16 4.33 16 3 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.12 -4.06 4.85 30.67 0.15 -3.91 16 5 C 0.17 6.48 2.73 45.02 0.12 6.60 16 6 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 7 N -0.74 -36.56 5.12 -322.81 -1.65 -38.22 16 8 C -0.24 -12.81 9.93 84.04 0.83 -11.98 16 9 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 10 C -0.08 -4.38 5.50 84.87 0.47 -3.91 16 11 N -0.97 -59.44 13.06 21.65 0.28 -59.15 16 12 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 14 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 16 C -0.14 -4.40 5.67 30.82 0.17 -4.23 16 17 C 0.12 2.56 6.38 86.51 0.55 3.11 16 18 N -0.61 -15.11 2.97 -794.22 -2.36 -17.47 16 19 C 0.51 12.33 6.92 87.65 0.61 12.93 16 20 O -0.55 -15.49 6.91 -3.03 -0.02 -15.51 16 21 C -0.13 -2.34 3.13 29.84 0.09 -2.24 16 22 C -0.05 -0.90 0.77 -52.18 -0.04 -0.94 16 23 C -0.15 -3.19 8.18 71.98 0.59 -2.60 16 24 C -0.15 -2.79 8.17 71.98 0.59 -2.20 16 25 C -0.14 -1.87 8.47 71.98 0.61 -1.26 16 26 H 0.07 2.07 6.54 -2.39 -0.02 2.06 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.05 1.43 6.95 -2.39 -0.02 1.41 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 31 H 0.37 20.08 7.80 -92.71 -0.72 19.36 16 32 H 0.25 14.89 8.31 -92.70 -0.77 14.11 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.11 1.79 5.93 -2.39 -0.01 1.77 16 37 H 0.11 1.49 7.70 -2.38 -0.02 1.47 16 38 H 0.10 1.65 7.94 -2.39 -0.02 1.63 16 39 H 0.06 1.62 5.51 -2.39 -0.01 1.60 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 1.49 5.51 -2.39 -0.01 1.48 16 45 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -63.87 352.80 3.93 -59.94 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.20 Total: 32.06 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 5.45 Total: -9.09 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -3.73 Total: -114.84 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.02 Total: -15.51 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -63.87 3.93 -59.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044457785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.359 kcal (2) G-P(sol) polarization free energy of solvation -63.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds