Wall clock time and date at job start Tue Mar 31 2020 06:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47105 * 2 1 4 4 C 1.52996 * 109.47004 * 120.00077 * 2 1 3 5 5 C 1.53009 * 109.47189 * 59.99970 * 4 2 1 6 6 C 1.52991 * 109.47564 * 299.99897 * 4 2 1 7 7 C 1.50702 * 109.46799 * 179.97438 * 4 2 1 8 8 O 1.21285 * 119.99686 * 114.45664 * 7 4 2 9 9 N 1.34772 * 120.00088 * 294.45108 * 7 4 2 10 10 C 1.47426 * 125.64806 * 176.20412 * 9 7 4 11 11 C 1.54916 * 104.83217 * 204.16964 * 10 9 7 12 12 H 1.08998 * 111.00472 * 81.06198 * 11 10 9 13 13 C 1.53007 * 111.00038 * 204.91523 * 11 10 9 14 14 C 1.55157 * 101.58072 * 322.98646 * 11 10 9 15 15 H 1.08997 * 110.71686 * 153.86706 * 14 11 10 16 16 N 1.46503 * 110.72151 * 277.14466 * 14 11 10 17 17 C 1.36934 * 119.99437 * 199.97707 * 16 14 11 18 18 H 1.07999 * 120.00232 * 359.97438 * 17 16 14 19 19 C 1.38819 * 119.99591 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00079 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99847 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46875 * 90.00165 * 21 19 17 23 23 H 1.48500 * 109.46890 * 209.99905 * 21 19 17 24 24 H 1.48497 * 109.47126 * 329.99708 * 21 19 17 25 25 C 1.47015 * 125.65110 * 356.24918 * 9 7 4 26 26 H 1.09002 * 109.46833 * 300.00213 * 1 2 3 27 27 H 1.08999 * 109.47050 * 59.99507 * 1 2 3 28 28 H 1.09002 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46443 * 240.00160 * 2 1 3 30 30 H 1.08998 * 109.46962 * 60.00051 * 3 2 1 31 31 H 1.09001 * 109.46956 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47054 * 300.00236 * 3 2 1 33 33 H 1.08995 * 109.47108 * 166.58188 * 5 4 2 34 34 H 1.08994 * 109.46664 * 286.58388 * 5 4 2 35 35 H 1.09002 * 109.46675 * 46.58174 * 5 4 2 36 36 H 1.09007 * 109.47267 * 309.03661 * 6 4 2 37 37 H 1.09004 * 109.47358 * 69.03372 * 6 4 2 38 38 H 1.09005 * 109.47586 * 189.03383 * 6 4 2 39 39 H 1.09003 * 110.36574 * 323.00150 * 10 9 7 40 40 H 1.08999 * 110.37065 * 85.21732 * 10 9 7 41 41 H 1.09000 * 109.46741 * 172.19369 * 13 11 10 42 42 H 1.08998 * 109.47122 * 292.19144 * 13 11 10 43 43 H 1.08995 * 109.46973 * 52.19914 * 13 11 10 44 44 H 0.96991 * 120.00014 * 19.96997 * 16 14 11 45 45 H 0.96990 * 120.00085 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.88350 * 59.48690 * 25 9 7 47 47 H 1.09002 * 109.88453 * 298.31765 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 1.5301 -0.0001 2.4984 7 6 3.5470 -0.7218 1.2488 8 8 4.1538 -0.1113 2.1033 9 7 4.2204 -1.4007 0.2992 10 6 5.6852 -1.4218 0.1336 11 6 5.9107 -1.7745 -1.3579 12 1 5.7989 -0.8930 -1.9891 13 6 7.2794 -2.4258 -1.5666 14 6 4.7665 -2.7907 -1.6141 15 1 4.4846 -2.7966 -2.6670 16 7 5.1561 -4.1322 -1.1727 17 6 4.4982 -5.2306 -1.6582 18 1 3.6919 -5.1080 -2.3661 19 6 4.8677 -6.5018 -1.2403 20 7 4.2351 -7.5576 -1.7065 21 14 6.2619 -6.7138 -0.0152 22 1 5.7156 -6.6890 1.3654 23 1 6.9393 -8.0131 -0.2563 24 1 7.2389 -5.6079 -0.1810 25 6 3.6160 -2.2422 -0.7439 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 2.0747 -2.7418 1.9956 34 1 0.4665 -2.1731 1.4876 35 1 1.6854 -2.6041 0.2642 36 1 1.7557 1.0636 2.4215 37 1 0.4521 -0.1377 2.5829 38 1 2.0192 -0.4123 3.3811 39 1 6.1067 -0.4423 0.3596 40 1 6.1288 -2.1823 0.7762 41 1 7.3569 -2.7882 -2.5916 42 1 8.0633 -1.6916 -1.3806 43 1 7.3931 -3.2616 -0.8762 44 1 5.8800 -4.2423 -0.5366 45 1 4.4930 -8.4458 -1.4143 46 1 2.9402 -1.6453 -1.3563 47 1 3.0722 -3.0680 -0.2851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054698520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:55 Heat of formation + Delta-G solvation = -27.068518 kcal Electronic energy + Delta-G solvation = -24500.270193 eV Core-core repulsion = 21297.262298 eV Total energy + Delta-G solvation = -3203.007894 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.60902 -38.21929 -36.65650 -34.05739 -32.49264 -31.38660 -30.81871 -28.27509 -27.76282 -27.22309 -25.87299 -24.01397 -23.34768 -22.03733 -20.09368 -19.45103 -18.47416 -17.80203 -16.38990 -15.97770 -15.50384 -15.14995 -14.63670 -14.32500 -14.17495 -13.93521 -13.24469 -13.19943 -13.11031 -12.87853 -12.65058 -12.49463 -12.20708 -12.14465 -12.05374 -11.97169 -11.83410 -11.50993 -11.47214 -11.15415 -11.02978 -11.02245 -10.83923 -10.50695 -10.49895 -10.30717 -10.24382 -10.00034 -9.63830 -9.39797 -9.02695 -8.26141 -7.39070 -5.86556 -3.23197 2.90210 3.29694 3.30493 3.34364 3.40435 4.50632 4.51602 4.61685 4.76212 4.85149 5.06745 5.10067 5.16232 5.26013 5.27114 5.31756 5.45951 5.50245 5.58581 5.63496 5.72532 5.75329 5.77539 5.80039 5.83164 5.89061 5.92267 5.93128 6.00710 6.01267 6.07513 6.16368 6.20021 6.20410 6.27554 6.35437 6.39327 6.50105 6.56337 6.68311 6.69078 7.86503 7.88710 8.32387 8.44871 9.09758 9.82409 10.01237 11.31205 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.005639 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.217300 B = 4964.199013 C = 5431.163138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.150 4.150 4 C -0.072 4.072 5 C -0.156 4.156 6 C -0.128 4.128 7 C 0.539 3.461 8 O -0.555 6.555 9 N -0.606 5.606 10 C 0.113 3.887 11 C -0.116 4.116 12 H 0.083 0.917 13 C -0.133 4.133 14 C 0.177 3.823 15 H 0.077 0.923 16 N -0.737 5.737 17 C -0.249 4.249 18 H 0.093 0.907 19 C 0.011 3.989 20 N -0.929 5.929 21 Si 0.879 3.121 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.276 1.276 25 C 0.061 3.939 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.060 0.940 44 H 0.364 0.636 45 H 0.260 0.740 46 H 0.063 0.937 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 15.842 2.129 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.207 4.207 4 C -0.075 4.075 5 C -0.213 4.213 6 C -0.186 4.186 7 C 0.328 3.672 8 O -0.434 6.434 9 N -0.339 5.339 10 C -0.010 4.010 11 C -0.136 4.136 12 H 0.101 0.899 13 C -0.191 4.191 14 C 0.066 3.934 15 H 0.095 0.905 16 N -0.379 5.379 17 C -0.379 4.379 18 H 0.110 0.890 19 C -0.185 4.185 20 N -0.576 5.576 21 Si 0.709 3.291 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.202 1.202 25 C -0.064 4.064 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.198 0.802 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.984 16.001 2.511 16.680 hybrid contribution 0.977 -0.432 0.928 1.415 sum -3.007 15.569 3.439 16.225 Atomic orbital electron populations 1.21897 0.94522 1.02246 1.01746 1.21255 0.96370 0.96188 0.96964 1.21926 1.01154 0.95894 1.01734 1.20747 0.91289 0.97785 0.97644 1.22209 1.01285 0.93728 1.04038 1.21762 1.00139 1.00666 0.96014 1.20205 0.89452 0.77712 0.79864 1.90644 1.70408 1.45079 1.37283 1.48412 1.07362 1.47539 1.30569 1.22230 0.81118 1.01202 0.96400 1.22648 0.96794 0.99011 0.95162 0.89854 1.21584 0.94501 1.00084 1.02948 1.21191 0.90688 0.84955 0.96616 0.90469 1.42794 1.41110 1.00966 1.53078 1.19039 1.13435 0.83778 1.21626 0.88965 1.24638 0.98869 0.95380 0.99644 1.69685 1.43168 0.97680 1.47080 0.86663 0.83138 0.77211 0.82102 1.21094 1.21625 1.20228 1.23625 0.98691 0.93974 0.90103 0.92408 0.92648 0.92050 0.89950 0.92162 0.92836 0.92620 0.92281 0.91629 0.90185 0.91854 0.92082 0.92193 0.91279 0.91883 0.91699 0.93321 0.92113 0.80191 0.92945 0.91940 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.52 37.16 0.32 -1.05 16 2 C -0.09 -1.00 2.13 -90.62 -0.19 -1.20 16 3 C -0.15 -1.65 8.61 37.16 0.32 -1.33 16 4 C -0.07 -0.94 0.30 -155.66 -0.05 -0.99 16 5 C -0.16 -2.05 6.94 37.16 0.26 -1.79 16 6 C -0.13 -1.57 7.12 37.15 0.26 -1.31 16 7 C 0.54 8.87 5.26 -10.99 -0.06 8.81 16 8 O -0.56 -10.77 16.19 5.55 0.09 -10.68 16 9 N -0.61 -9.74 3.32 -170.51 -0.57 -10.31 16 10 C 0.11 1.78 6.34 -2.52 -0.02 1.76 16 11 C -0.12 -1.69 3.51 -88.46 -0.31 -2.00 16 12 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 13 C -0.13 -1.93 8.85 37.16 0.33 -1.60 16 14 C 0.18 3.03 3.37 -66.09 -0.22 2.81 16 15 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 16 N -0.74 -15.85 4.42 -51.65 -0.23 -16.08 16 17 C -0.25 -6.48 10.46 -15.06 -0.16 -6.64 16 18 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 19 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 20 N -0.93 -27.96 13.97 55.49 0.78 -27.19 16 21 Si 0.88 21.43 27.74 -169.99 -4.71 16.71 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 25 C 0.06 0.97 4.81 -3.06 -0.01 0.95 16 26 H 0.06 0.50 6.64 -51.93 -0.34 0.16 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.57 6.75 -51.93 -0.35 0.22 16 29 H 0.08 0.97 5.13 -51.93 -0.27 0.70 16 30 H 0.06 0.64 6.24 -51.93 -0.32 0.32 16 31 H 0.05 0.69 7.22 -51.93 -0.37 0.31 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.06 0.73 7.03 -51.93 -0.37 0.36 16 35 H 0.08 1.10 4.85 -51.93 -0.25 0.85 16 36 H 0.06 0.77 5.99 -51.92 -0.31 0.46 16 37 H 0.06 0.61 6.80 -51.93 -0.35 0.26 16 38 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 39 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 40 H 0.06 1.07 7.99 -51.93 -0.41 0.66 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 1.00 6.38 -51.93 -0.33 0.67 16 44 H 0.36 7.94 3.96 -40.82 -0.16 7.78 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.06 0.86 5.51 -51.93 -0.29 0.57 16 47 H 0.09 1.61 5.63 -51.93 -0.29 1.32 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -30.39 343.46 -6.90 -37.29 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -7.80 Total: 8.44 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 0.37 Total: -3.35 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.02 Total: -53.58 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.39 -6.90 -37.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054698520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.219 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds