Wall clock time and date at job start Tue Mar 31 2020 06:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47105 * 2 1 4 4 C 1.52996 * 109.47004 * 120.00077 * 2 1 3 5 5 C 1.53009 * 109.47189 * 59.99970 * 4 2 1 6 6 C 1.52991 * 109.47564 * 299.99897 * 4 2 1 7 7 C 1.50702 * 109.46799 * 179.97438 * 4 2 1 8 8 O 1.21285 * 119.99686 * 114.45664 * 7 4 2 9 9 N 1.34772 * 120.00088 * 294.45108 * 7 4 2 10 10 C 1.47426 * 125.64806 * 176.20412 * 9 7 4 11 11 C 1.54916 * 104.83217 * 204.16964 * 10 9 7 12 12 H 1.08998 * 111.00472 * 81.06198 * 11 10 9 13 13 C 1.53007 * 111.00038 * 204.91523 * 11 10 9 14 14 C 1.55157 * 101.58072 * 322.98646 * 11 10 9 15 15 H 1.08997 * 110.71686 * 153.86706 * 14 11 10 16 16 N 1.46503 * 110.72151 * 277.14466 * 14 11 10 17 17 C 1.36934 * 119.99437 * 199.97707 * 16 14 11 18 18 H 1.07999 * 120.00232 * 359.97438 * 17 16 14 19 19 C 1.38819 * 119.99591 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00079 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99847 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46875 * 90.00165 * 21 19 17 23 23 H 1.48500 * 109.46890 * 209.99905 * 21 19 17 24 24 H 1.48497 * 109.47126 * 329.99708 * 21 19 17 25 25 C 1.47015 * 125.65110 * 356.24918 * 9 7 4 26 26 H 1.09002 * 109.46833 * 300.00213 * 1 2 3 27 27 H 1.08999 * 109.47050 * 59.99507 * 1 2 3 28 28 H 1.09002 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46443 * 240.00160 * 2 1 3 30 30 H 1.08998 * 109.46962 * 60.00051 * 3 2 1 31 31 H 1.09001 * 109.46956 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47054 * 300.00236 * 3 2 1 33 33 H 1.08995 * 109.47108 * 166.58188 * 5 4 2 34 34 H 1.08994 * 109.46664 * 286.58388 * 5 4 2 35 35 H 1.09002 * 109.46675 * 46.58174 * 5 4 2 36 36 H 1.09007 * 109.47267 * 309.03661 * 6 4 2 37 37 H 1.09004 * 109.47358 * 69.03372 * 6 4 2 38 38 H 1.09005 * 109.47586 * 189.03383 * 6 4 2 39 39 H 1.09003 * 110.36574 * 323.00150 * 10 9 7 40 40 H 1.08999 * 110.37065 * 85.21732 * 10 9 7 41 41 H 1.09000 * 109.46741 * 172.19369 * 13 11 10 42 42 H 1.08998 * 109.47122 * 292.19144 * 13 11 10 43 43 H 1.08995 * 109.46973 * 52.19914 * 13 11 10 44 44 H 0.96991 * 120.00014 * 19.96997 * 16 14 11 45 45 H 0.96990 * 120.00085 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.88350 * 59.48690 * 25 9 7 47 47 H 1.09002 * 109.88453 * 298.31765 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 1.5301 -0.0001 2.4984 7 6 3.5470 -0.7218 1.2488 8 8 4.1538 -0.1113 2.1033 9 7 4.2204 -1.4007 0.2992 10 6 5.6852 -1.4218 0.1336 11 6 5.9107 -1.7745 -1.3579 12 1 5.7989 -0.8930 -1.9891 13 6 7.2794 -2.4258 -1.5666 14 6 4.7665 -2.7907 -1.6141 15 1 4.4846 -2.7966 -2.6670 16 7 5.1561 -4.1322 -1.1727 17 6 4.4982 -5.2306 -1.6582 18 1 3.6919 -5.1080 -2.3661 19 6 4.8677 -6.5018 -1.2403 20 7 4.2351 -7.5576 -1.7065 21 14 6.2619 -6.7138 -0.0152 22 1 5.7156 -6.6890 1.3654 23 1 6.9393 -8.0131 -0.2563 24 1 7.2389 -5.6079 -0.1810 25 6 3.6160 -2.2422 -0.7439 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 2.0747 -2.7418 1.9956 34 1 0.4665 -2.1731 1.4876 35 1 1.6854 -2.6041 0.2642 36 1 1.7557 1.0636 2.4215 37 1 0.4521 -0.1377 2.5829 38 1 2.0192 -0.4123 3.3811 39 1 6.1067 -0.4423 0.3596 40 1 6.1288 -2.1823 0.7762 41 1 7.3569 -2.7882 -2.5916 42 1 8.0633 -1.6916 -1.3806 43 1 7.3931 -3.2616 -0.8762 44 1 5.8800 -4.2423 -0.5366 45 1 4.4930 -8.4458 -1.4143 46 1 2.9402 -1.6453 -1.3563 47 1 3.0722 -3.0680 -0.2851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054698520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:54 Heat of formation + Delta-G solvation = -45.579484 kcal Electronic energy + Delta-G solvation = -24501.072888 eV Core-core repulsion = 21297.262298 eV Total energy + Delta-G solvation = -3203.810590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83546 -39.51135 -37.83988 -35.79212 -33.97835 -32.73647 -32.21247 -29.74321 -28.73617 -28.25213 -26.95760 -25.61474 -24.69317 -23.33870 -21.22216 -20.87522 -19.89037 -19.46372 -17.57014 -17.38240 -16.72154 -16.44890 -16.11173 -15.89599 -15.45480 -15.15382 -14.70316 -14.59460 -14.25174 -14.06548 -13.77432 -13.74130 -13.50769 -13.35585 -13.16438 -13.09990 -13.05184 -12.92963 -12.81536 -12.49910 -12.29888 -12.15268 -12.08174 -11.99449 -11.79824 -11.58768 -11.44792 -11.41380 -11.26995 -10.95246 -10.61964 -9.61917 -9.29413 -8.00696 -5.32567 1.35012 1.37236 1.43449 1.61947 2.05339 2.47314 3.30060 3.34732 3.53759 3.64182 3.71635 3.81738 3.85206 4.01402 4.18350 4.27522 4.35658 4.37531 4.45950 4.56920 4.61794 4.68581 4.70360 4.81183 4.81866 4.84138 4.90047 4.90636 4.97103 4.97686 5.07318 5.09649 5.13187 5.18108 5.21272 5.27210 5.31841 5.34843 5.45857 5.51030 5.57243 5.81995 6.23729 6.57437 7.09038 7.15525 7.85555 8.02735 9.20333 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.005639 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.217300 B = 4964.199013 C = 5431.163138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.069 4.069 5 C -0.152 4.152 6 C -0.125 4.125 7 C 0.532 3.468 8 O -0.589 6.589 9 N -0.608 5.608 10 C 0.109 3.891 11 C -0.099 4.099 12 H 0.113 0.887 13 C -0.132 4.132 14 C 0.165 3.835 15 H 0.084 0.916 16 N -0.740 5.740 17 C -0.218 4.218 18 H 0.071 0.929 19 C -0.054 4.054 20 N -0.979 5.979 21 Si 0.933 3.067 22 H -0.291 1.291 23 H -0.298 1.298 24 H -0.251 1.251 25 C 0.072 3.928 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.039 0.961 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.363 0.637 45 H 0.255 0.745 46 H 0.090 0.910 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 18.174 1.783 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.204 4.204 4 C -0.072 4.072 5 C -0.209 4.209 6 C -0.183 4.183 7 C 0.323 3.677 8 O -0.471 6.471 9 N -0.339 5.339 10 C -0.013 4.013 11 C -0.119 4.119 12 H 0.131 0.869 13 C -0.190 4.190 14 C 0.056 3.944 15 H 0.102 0.898 16 N -0.383 5.383 17 C -0.349 4.349 18 H 0.089 0.911 19 C -0.246 4.246 20 N -0.630 5.630 21 Si 0.763 3.237 22 H -0.218 1.218 23 H -0.225 1.225 24 H -0.176 1.176 25 C -0.053 4.053 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.198 0.802 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.322 18.396 2.154 19.019 hybrid contribution 1.045 -1.051 1.008 1.793 sum -3.277 17.345 3.162 17.933 Atomic orbital electron populations 1.21886 0.92602 1.02709 1.02906 1.21246 0.97871 0.95893 0.95366 1.21901 0.99665 0.95942 1.02849 1.20816 0.88916 0.98147 0.99326 1.22181 1.02488 0.93337 1.02892 1.21760 1.01520 1.00342 0.94634 1.20865 0.90863 0.76886 0.79095 1.90621 1.71414 1.46553 1.38463 1.48503 1.07605 1.47260 1.30581 1.22279 0.81020 1.01069 0.96978 1.22610 0.95728 0.98948 0.94608 0.86900 1.21571 0.95209 1.00007 1.02176 1.21472 0.92446 0.83530 0.96993 0.89773 1.42807 1.40787 1.01678 1.52979 1.19042 1.11697 0.84882 1.19255 0.91100 1.25265 1.01711 0.95426 1.02227 1.69833 1.45543 0.97997 1.49595 0.85743 0.81107 0.77389 0.79488 1.21788 1.22489 1.17611 1.23429 0.98170 0.93787 0.89888 0.91520 0.91302 0.91931 0.90396 0.91815 0.95046 0.90776 0.94546 0.89214 0.90854 0.91811 0.89475 0.94159 0.90558 0.93586 0.91783 0.90665 0.94414 0.80231 0.93558 0.89185 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.52 71.98 0.61 -1.57 16 2 C -0.09 -1.69 2.13 -10.79 -0.02 -1.72 16 3 C -0.15 -2.86 8.61 71.98 0.62 -2.24 16 4 C -0.07 -1.71 0.30 -52.93 -0.02 -1.73 16 5 C -0.15 -3.82 6.94 71.99 0.50 -3.32 16 6 C -0.13 -2.87 7.12 71.98 0.51 -2.35 16 7 C 0.53 17.11 5.26 87.66 0.46 17.57 16 8 O -0.59 -22.75 16.19 -3.04 -0.05 -22.80 16 9 N -0.61 -18.83 3.32 -811.77 -2.70 -21.52 16 10 C 0.11 3.27 6.34 86.86 0.55 3.82 16 11 C -0.10 -2.62 3.51 -9.40 -0.03 -2.66 16 12 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 13 C -0.13 -3.47 8.85 71.98 0.64 -2.84 16 14 C 0.17 5.37 3.37 46.18 0.16 5.53 16 15 H 0.08 2.67 8.12 -2.39 -0.02 2.65 16 16 N -0.74 -31.19 4.42 -317.31 -1.40 -32.59 16 17 C -0.22 -11.36 10.46 84.04 0.88 -10.48 16 18 H 0.07 3.97 8.06 -2.91 -0.02 3.94 16 19 C -0.05 -3.07 5.50 84.86 0.47 -2.60 16 20 N -0.98 -60.43 13.97 21.65 0.30 -60.13 16 21 Si 0.93 44.69 27.74 68.60 1.90 46.59 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 23 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 24 H -0.25 -10.84 6.52 99.48 0.65 -10.19 16 25 C 0.07 2.16 4.81 86.73 0.42 2.58 16 26 H 0.07 0.91 6.64 -2.39 -0.02 0.89 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.95 6.75 -2.39 -0.02 0.93 16 29 H 0.08 1.61 5.13 -2.39 -0.01 1.60 16 30 H 0.06 1.20 6.24 -2.39 -0.01 1.18 16 31 H 0.03 0.75 7.22 -2.39 -0.02 0.73 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.06 8.07 -2.39 -0.02 1.04 16 34 H 0.09 1.79 7.03 -2.39 -0.02 1.78 16 35 H 0.07 1.94 4.85 -2.39 -0.01 1.93 16 36 H 0.06 1.45 5.99 -2.38 -0.01 1.43 16 37 H 0.09 1.51 6.80 -2.39 -0.02 1.49 16 38 H 0.04 1.07 7.90 -2.38 -0.02 1.05 16 39 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16 40 H 0.05 1.53 7.99 -2.39 -0.02 1.51 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.04 1.17 6.38 -2.39 -0.02 1.15 16 44 H 0.36 15.48 3.96 -92.72 -0.37 15.11 16 45 H 0.26 15.25 8.31 -92.72 -0.77 14.48 16 46 H 0.09 2.25 5.51 -2.39 -0.01 2.23 16 47 H 0.07 2.44 5.63 -2.39 -0.01 2.42 16 Total: -1.00 -66.86 343.46 4.33 -62.53 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.53 Total: 29.94 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 5.74 Total: -2.01 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -3.80 Total: -114.25 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.59 kcal Total: -66.86 4.33 -62.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054698520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.946 kcal (2) G-P(sol) polarization free energy of solvation -66.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds