Wall clock time and date at job start Tue Mar 31 2020 06:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.46897 * 2 1 4 4 C 1.53000 * 109.46988 * 119.99507 * 2 1 3 5 5 C 1.53001 * 109.47071 * 60.00312 * 4 2 1 6 6 C 1.53000 * 109.47280 * 300.00232 * 4 2 1 7 7 C 1.50701 * 109.46893 * 179.97438 * 4 2 1 8 8 O 1.21280 * 119.99977 * 353.31675 * 7 4 2 9 9 N 1.34782 * 119.99860 * 173.04059 * 7 4 2 10 10 C 1.47424 * 125.64835 * 174.50420 * 9 7 4 11 11 C 1.55130 * 104.72026 * 155.81768 * 10 9 7 12 12 H 1.09003 * 111.22661 * 279.17959 * 11 10 9 13 13 C 1.53000 * 110.90441 * 155.27795 * 11 10 9 14 14 C 1.55157 * 101.48748 * 37.29480 * 11 10 9 15 15 H 1.08997 * 110.72107 * 205.96956 * 14 11 10 16 16 N 1.46504 * 110.71605 * 82.69514 * 14 11 10 17 17 C 1.36943 * 119.99689 * 160.02874 * 16 14 11 18 18 H 1.08003 * 119.99939 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99709 * 180.02562 * 17 16 14 20 20 N 1.31613 * 119.99526 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00142 * 359.97438 * 19 17 16 22 22 H 1.48491 * 109.47385 * 90.00068 * 21 19 17 23 23 H 1.48503 * 109.47096 * 210.00275 * 21 19 17 24 24 H 1.48506 * 109.47300 * 329.99987 * 21 19 17 25 25 C 1.47028 * 125.64789 * 354.81300 * 9 7 4 26 26 H 1.09001 * 109.47435 * 300.00446 * 1 2 3 27 27 H 1.09000 * 109.47124 * 60.00449 * 1 2 3 28 28 H 1.09002 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47231 * 240.00092 * 2 1 3 30 30 H 1.08992 * 109.47105 * 60.00014 * 3 2 1 31 31 H 1.09006 * 109.46621 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46867 * 299.99708 * 3 2 1 33 33 H 1.08995 * 109.47282 * 181.84524 * 5 4 2 34 34 H 1.08997 * 109.47110 * 301.85551 * 5 4 2 35 35 H 1.09006 * 109.47182 * 61.84271 * 5 4 2 36 36 H 1.09004 * 109.46961 * 283.41283 * 6 4 2 37 37 H 1.08995 * 109.47314 * 43.41818 * 6 4 2 38 38 H 1.09002 * 109.46545 * 163.41380 * 6 4 2 39 39 H 1.08997 * 110.36647 * 274.74489 * 10 9 7 40 40 H 1.09000 * 110.36578 * 37.07282 * 10 9 7 41 41 H 1.08998 * 109.46721 * 307.97045 * 13 11 10 42 42 H 1.08999 * 109.47565 * 67.97714 * 13 11 10 43 43 H 1.09009 * 109.47007 * 187.97765 * 13 11 10 44 44 H 0.96999 * 120.00349 * 340.02200 * 16 14 11 45 45 H 0.97003 * 120.00102 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.88070 * 300.44350 * 25 9 7 47 47 H 1.09000 * 109.88058 * 61.44938 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.5300 -2.1637 1.2494 6 6 1.5299 0.0002 2.4985 7 6 3.5469 -0.7217 1.2490 8 8 4.1533 -0.3064 0.2842 9 7 4.2209 -1.1785 2.3231 10 6 5.6832 -1.3425 2.4140 11 6 5.9939 -1.2735 3.9323 12 1 6.0310 -0.2414 4.2810 13 6 7.2975 -2.0060 4.2565 14 6 4.7727 -2.0195 4.5318 15 1 4.5810 -1.6876 5.5522 16 7 4.9778 -3.4694 4.4867 17 6 4.2487 -4.2898 5.3056 18 1 3.5228 -3.8679 5.9850 19 6 4.4434 -5.6636 5.2633 20 7 3.7430 -6.4520 6.0507 21 14 5.6994 -6.3931 4.0888 22 1 7.0189 -6.4771 4.7647 23 1 5.2645 -7.7533 3.6813 24 1 5.8133 -5.5290 2.8864 25 6 3.6190 -1.6019 3.5959 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.8660 -2.6678 2.1554 34 1 0.4405 -2.1639 1.2161 35 1 1.9201 -2.6870 0.3764 36 1 2.1126 0.9075 2.6575 37 1 0.4802 0.2612 2.3642 38 1 1.6336 -0.6546 3.3638 39 1 5.9827 -2.3081 2.0066 40 1 6.1891 -0.5338 1.8865 41 1 7.2626 -3.0120 3.8383 42 1 8.1373 -1.4618 3.8246 43 1 7.4211 -2.0663 5.3379 44 1 5.6300 -3.8483 3.8768 45 1 3.8787 -7.4120 6.0209 46 1 3.0647 -0.7737 4.0374 47 1 2.9511 -2.4466 3.4273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054698522.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:58 Heat of formation + Delta-G solvation = -24.506051 kcal Electronic energy + Delta-G solvation = -24379.690559 eV Core-core repulsion = 21176.793782 eV Total energy + Delta-G solvation = -3202.896777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59105 -38.30911 -36.46511 -34.15183 -32.75947 -31.19389 -30.68014 -28.27364 -27.85029 -26.78914 -26.14563 -24.20178 -23.24552 -21.98237 -20.07659 -19.46797 -18.30757 -17.80920 -16.29846 -16.11236 -15.49273 -14.96072 -14.49124 -14.34547 -14.30755 -13.98377 -13.55746 -13.33222 -13.13363 -12.90639 -12.57628 -12.46400 -12.25751 -12.06732 -12.00685 -11.83811 -11.57638 -11.50785 -11.31835 -11.18966 -11.04531 -10.93998 -10.79441 -10.56154 -10.45002 -10.35122 -10.28232 -9.98317 -9.64693 -9.34397 -9.01658 -8.24884 -7.39025 -5.86863 -3.23464 2.89421 3.28951 3.30782 3.33601 3.39816 4.50377 4.52309 4.65565 4.83428 4.90011 5.07218 5.11460 5.19993 5.26780 5.29574 5.32033 5.49871 5.52223 5.61533 5.65452 5.69004 5.75627 5.78285 5.82944 5.84860 5.87784 5.90677 5.96562 6.05019 6.06080 6.11933 6.15294 6.17565 6.22190 6.31142 6.43373 6.46239 6.52407 6.58177 6.67727 6.70749 7.86705 7.88660 8.32075 8.44721 9.09530 9.82158 10.00997 11.30943 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019723 B = 0.005453 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.320230 B = 5133.879980 C = 5766.271553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.069 4.069 3 C -0.155 4.155 4 C -0.070 4.070 5 C -0.149 4.149 6 C -0.157 4.157 7 C 0.538 3.462 8 O -0.552 6.552 9 N -0.606 5.606 10 C 0.112 3.888 11 C -0.116 4.116 12 H 0.084 0.916 13 C -0.133 4.133 14 C 0.176 3.824 15 H 0.078 0.922 16 N -0.737 5.737 17 C -0.249 4.249 18 H 0.093 0.907 19 C 0.011 3.989 20 N -0.929 5.929 21 Si 0.878 3.122 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.062 3.938 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.363 0.637 45 H 0.260 0.740 46 H 0.068 0.932 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 13.849 -7.736 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.088 4.088 3 C -0.212 4.212 4 C -0.074 4.074 5 C -0.206 4.206 6 C -0.214 4.214 7 C 0.327 3.673 8 O -0.431 6.431 9 N -0.339 5.339 10 C -0.010 4.010 11 C -0.136 4.136 12 H 0.102 0.898 13 C -0.190 4.190 14 C 0.065 3.935 15 H 0.096 0.904 16 N -0.380 5.380 17 C -0.379 4.379 18 H 0.110 0.890 19 C -0.185 4.185 20 N -0.576 5.576 21 Si 0.708 3.292 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.064 4.064 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.198 0.802 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.477 13.961 -8.115 16.337 hybrid contribution 0.794 -0.810 -0.838 1.410 sum -1.683 13.151 -8.953 15.998 Atomic orbital electron populations 1.22014 0.95195 1.01959 1.01685 1.20873 0.94980 0.96448 0.96515 1.22015 1.03242 0.95204 1.00721 1.20703 0.91282 0.97783 0.97585 1.22016 1.01646 0.93595 1.03378 1.22285 1.01654 1.00594 0.96844 1.20237 0.89474 0.76417 0.81195 1.90602 1.70469 1.47669 1.34385 1.48422 1.07623 1.63502 1.14329 1.22285 0.80998 1.01159 0.96590 1.22684 0.96534 1.00071 0.94332 0.89795 1.21565 0.95032 1.00123 1.02326 1.21204 0.90636 0.85079 0.96596 0.90429 1.42811 1.47403 1.00643 1.47124 1.19045 1.16202 0.88026 1.14602 0.88967 1.24631 0.99071 0.95942 0.98859 1.69686 1.43233 1.03676 1.41031 0.86664 0.82219 0.78892 0.81419 1.20880 1.21658 1.20395 1.23607 0.99154 0.99486 0.84103 0.92238 0.92775 0.92287 0.90801 0.93230 0.90660 0.93327 0.90769 0.91221 0.92498 0.92424 0.91280 0.90522 0.91851 0.91128 0.92348 0.93251 0.91635 0.80208 0.92944 0.91434 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.54 37.16 0.32 -1.16 16 2 C -0.07 -0.85 1.90 -90.62 -0.17 -1.02 16 3 C -0.15 -1.88 8.56 37.16 0.32 -1.56 16 4 C -0.07 -0.93 0.30 -155.66 -0.05 -0.98 16 5 C -0.15 -1.99 7.99 37.16 0.30 -1.69 16 6 C -0.16 -1.80 6.56 37.16 0.24 -1.56 16 7 C 0.54 8.77 6.10 -10.98 -0.07 8.70 16 8 O -0.55 -10.38 14.17 5.56 0.08 -10.31 16 9 N -0.61 -9.72 3.32 -170.38 -0.57 -10.29 16 10 C 0.11 1.76 6.38 -2.41 -0.02 1.74 16 11 C -0.12 -1.68 3.53 -88.35 -0.31 -1.99 16 12 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 13 C -0.13 -1.88 8.85 37.16 0.33 -1.55 16 14 C 0.18 3.01 3.36 -66.10 -0.22 2.79 16 15 H 0.08 1.32 8.12 -51.93 -0.42 0.89 16 16 N -0.74 -15.79 4.42 -51.65 -0.23 -16.02 16 17 C -0.25 -6.46 10.46 -15.06 -0.16 -6.62 16 18 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 19 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 20 N -0.93 -27.90 13.97 55.49 0.78 -27.13 16 21 Si 0.88 21.33 27.73 -169.99 -4.71 16.61 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 25 C 0.06 0.97 4.75 -3.06 -0.01 0.96 16 26 H 0.06 0.54 6.11 -51.93 -0.32 0.22 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.56 6.39 -51.93 -0.33 0.23 16 29 H 0.07 1.01 8.02 -51.93 -0.42 0.59 16 30 H 0.05 0.55 6.83 -51.93 -0.35 0.19 16 31 H 0.07 1.11 5.76 -51.93 -0.30 0.81 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.10 5.38 -51.93 -0.28 0.82 16 34 H 0.07 0.78 6.33 -51.93 -0.33 0.46 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.66 7.28 -51.93 -0.38 0.29 16 37 H 0.07 0.68 5.73 -51.93 -0.30 0.38 16 38 H 0.08 0.90 5.02 -51.93 -0.26 0.64 16 39 H 0.06 1.07 7.99 -51.93 -0.41 0.66 16 40 H 0.07 1.07 7.99 -51.93 -0.41 0.66 16 41 H 0.06 0.93 6.37 -51.93 -0.33 0.60 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 44 H 0.36 7.90 3.96 -40.82 -0.16 7.74 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.07 0.92 5.67 -51.93 -0.29 0.63 16 47 H 0.08 1.49 5.63 -51.93 -0.29 1.20 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -30.02 340.95 -6.84 -36.86 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.72 Total: 8.85 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 0.40 Total: -3.72 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.02 Total: -53.44 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.02 -6.84 -36.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054698522.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.355 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds