Wall clock time and date at job start Tue Mar 31 2020 06:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.46897 * 2 1 4 4 C 1.53000 * 109.46988 * 119.99507 * 2 1 3 5 5 C 1.53001 * 109.47071 * 60.00312 * 4 2 1 6 6 C 1.53000 * 109.47280 * 300.00232 * 4 2 1 7 7 C 1.50701 * 109.46893 * 179.97438 * 4 2 1 8 8 O 1.21280 * 119.99977 * 353.31675 * 7 4 2 9 9 N 1.34782 * 119.99860 * 173.04059 * 7 4 2 10 10 C 1.47424 * 125.64835 * 174.50420 * 9 7 4 11 11 C 1.55130 * 104.72026 * 155.81768 * 10 9 7 12 12 H 1.09003 * 111.22661 * 279.17959 * 11 10 9 13 13 C 1.53000 * 110.90441 * 155.27795 * 11 10 9 14 14 C 1.55157 * 101.48748 * 37.29480 * 11 10 9 15 15 H 1.08997 * 110.72107 * 205.96956 * 14 11 10 16 16 N 1.46504 * 110.71605 * 82.69514 * 14 11 10 17 17 C 1.36943 * 119.99689 * 160.02874 * 16 14 11 18 18 H 1.08003 * 119.99939 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99709 * 180.02562 * 17 16 14 20 20 N 1.31613 * 119.99526 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00142 * 359.97438 * 19 17 16 22 22 H 1.48491 * 109.47385 * 90.00068 * 21 19 17 23 23 H 1.48503 * 109.47096 * 210.00275 * 21 19 17 24 24 H 1.48506 * 109.47300 * 329.99987 * 21 19 17 25 25 C 1.47028 * 125.64789 * 354.81300 * 9 7 4 26 26 H 1.09001 * 109.47435 * 300.00446 * 1 2 3 27 27 H 1.09000 * 109.47124 * 60.00449 * 1 2 3 28 28 H 1.09002 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47231 * 240.00092 * 2 1 3 30 30 H 1.08992 * 109.47105 * 60.00014 * 3 2 1 31 31 H 1.09006 * 109.46621 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46867 * 299.99708 * 3 2 1 33 33 H 1.08995 * 109.47282 * 181.84524 * 5 4 2 34 34 H 1.08997 * 109.47110 * 301.85551 * 5 4 2 35 35 H 1.09006 * 109.47182 * 61.84271 * 5 4 2 36 36 H 1.09004 * 109.46961 * 283.41283 * 6 4 2 37 37 H 1.08995 * 109.47314 * 43.41818 * 6 4 2 38 38 H 1.09002 * 109.46545 * 163.41380 * 6 4 2 39 39 H 1.08997 * 110.36647 * 274.74489 * 10 9 7 40 40 H 1.09000 * 110.36578 * 37.07282 * 10 9 7 41 41 H 1.08998 * 109.46721 * 307.97045 * 13 11 10 42 42 H 1.08999 * 109.47565 * 67.97714 * 13 11 10 43 43 H 1.09009 * 109.47007 * 187.97765 * 13 11 10 44 44 H 0.96999 * 120.00349 * 340.02200 * 16 14 11 45 45 H 0.97003 * 120.00102 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.88070 * 300.44350 * 25 9 7 47 47 H 1.09000 * 109.88058 * 61.44938 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.5300 -2.1637 1.2494 6 6 1.5299 0.0002 2.4985 7 6 3.5469 -0.7217 1.2490 8 8 4.1533 -0.3064 0.2842 9 7 4.2209 -1.1785 2.3231 10 6 5.6832 -1.3425 2.4140 11 6 5.9939 -1.2735 3.9323 12 1 6.0310 -0.2414 4.2810 13 6 7.2975 -2.0060 4.2565 14 6 4.7727 -2.0195 4.5318 15 1 4.5810 -1.6876 5.5522 16 7 4.9778 -3.4694 4.4867 17 6 4.2487 -4.2898 5.3056 18 1 3.5228 -3.8679 5.9850 19 6 4.4434 -5.6636 5.2633 20 7 3.7430 -6.4520 6.0507 21 14 5.6994 -6.3931 4.0888 22 1 7.0189 -6.4771 4.7647 23 1 5.2645 -7.7533 3.6813 24 1 5.8133 -5.5290 2.8864 25 6 3.6190 -1.6019 3.5959 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.8660 -2.6678 2.1554 34 1 0.4405 -2.1639 1.2161 35 1 1.9201 -2.6870 0.3764 36 1 2.1126 0.9075 2.6575 37 1 0.4802 0.2612 2.3642 38 1 1.6336 -0.6546 3.3638 39 1 5.9827 -2.3081 2.0066 40 1 6.1891 -0.5338 1.8865 41 1 7.2626 -3.0120 3.8383 42 1 8.1373 -1.4618 3.8246 43 1 7.4211 -2.0663 5.3379 44 1 5.6300 -3.8483 3.8768 45 1 3.8787 -7.4120 6.0209 46 1 3.0647 -0.7737 4.0374 47 1 2.9511 -2.4466 3.4273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054698522.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:57 Heat of formation + Delta-G solvation = -42.566730 kcal Electronic energy + Delta-G solvation = -24380.473729 eV Core-core repulsion = 21176.793782 eV Total energy + Delta-G solvation = -3203.679947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.81190 -39.59034 -37.65480 -35.83117 -34.20072 -32.80255 -31.92061 -29.73088 -28.84420 -27.72796 -27.31105 -25.70866 -24.72351 -23.25691 -21.24334 -20.88152 -19.81411 -19.32959 -17.55974 -17.43896 -16.70478 -16.39804 -16.04993 -15.79351 -15.33812 -15.32045 -14.74042 -14.68274 -14.62969 -14.05203 -13.87010 -13.69687 -13.50559 -13.23910 -13.20229 -13.06964 -12.91209 -12.88131 -12.55269 -12.43133 -12.33750 -12.16452 -12.00993 -11.95350 -11.87253 -11.58781 -11.44565 -11.37192 -11.29832 -10.99527 -10.52398 -9.59150 -9.27871 -8.00195 -5.31985 1.36587 1.37160 1.43665 1.62304 2.05945 2.47751 3.30323 3.35849 3.57463 3.60435 3.78769 3.83803 3.87784 4.01997 4.16912 4.33905 4.37261 4.41280 4.53658 4.55376 4.59457 4.62817 4.71752 4.77654 4.81075 4.85819 4.89605 4.90130 4.94222 4.99610 5.03869 5.12820 5.17144 5.21355 5.23914 5.28059 5.29213 5.41123 5.46784 5.53986 5.61122 5.82648 6.24241 6.59135 7.09706 7.17232 7.86208 8.03452 9.20966 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019723 B = 0.005453 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.320230 B = 5133.879980 C = 5766.271553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C -0.150 4.150 4 C -0.068 4.068 5 C -0.146 4.146 6 C -0.153 4.153 7 C 0.530 3.470 8 O -0.581 6.581 9 N -0.609 5.609 10 C 0.109 3.891 11 C -0.100 4.100 12 H 0.112 0.888 13 C -0.132 4.132 14 C 0.164 3.836 15 H 0.084 0.916 16 N -0.740 5.740 17 C -0.218 4.218 18 H 0.071 0.929 19 C -0.054 4.054 20 N -0.979 5.979 21 Si 0.936 3.064 22 H -0.277 1.277 23 H -0.301 1.301 24 H -0.264 1.264 25 C 0.072 3.928 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.363 0.637 45 H 0.255 0.745 46 H 0.095 0.905 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 15.977 -8.253 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.207 4.207 4 C -0.071 4.071 5 C -0.203 4.203 6 C -0.210 4.210 7 C 0.321 3.679 8 O -0.462 6.462 9 N -0.341 5.341 10 C -0.014 4.014 11 C -0.120 4.120 12 H 0.130 0.870 13 C -0.190 4.190 14 C 0.055 3.945 15 H 0.102 0.898 16 N -0.383 5.383 17 C -0.349 4.349 18 H 0.089 0.911 19 C -0.246 4.246 20 N -0.630 5.630 21 Si 0.765 3.235 22 H -0.203 1.203 23 H -0.229 1.229 24 H -0.189 1.189 25 C -0.053 4.053 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.056 0.944 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.198 0.802 45 H 0.064 0.936 46 H 0.113 0.887 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.672 16.148 -8.648 18.512 hybrid contribution 0.848 -1.355 -0.690 1.741 sum -1.824 14.793 -9.339 17.589 Atomic orbital electron populations 1.21982 0.92876 1.02580 1.02901 1.20869 0.96805 0.96063 0.95010 1.21951 1.01343 0.95415 1.02009 1.20761 0.89080 0.98045 0.99211 1.21993 1.03106 0.93396 1.01792 1.22266 1.02992 1.00219 0.95482 1.20872 0.90816 0.75654 0.80601 1.90590 1.71375 1.48911 1.35303 1.48521 1.07844 1.63232 1.14454 1.22318 0.81039 1.00501 0.97495 1.22650 0.95291 1.01108 0.92902 0.86952 1.21562 0.95831 0.99293 1.02276 1.21487 0.92713 0.82828 0.97521 0.89791 1.42818 1.46845 1.02261 1.46336 1.19047 1.14462 0.88277 1.13143 0.91149 1.25257 1.01557 0.96686 1.01067 1.69836 1.45859 1.03610 1.43697 0.85705 0.80128 0.77585 0.80072 1.20312 1.22856 1.18933 1.23426 0.98217 0.99832 0.83797 0.90913 0.91694 0.91966 0.92922 0.91826 0.93491 0.92151 0.92513 0.88850 0.93825 0.92204 0.89046 0.90892 0.93546 0.90506 0.94419 0.90625 0.91738 0.80235 0.93550 0.88684 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.54 71.98 0.61 -1.81 16 2 C -0.07 -1.56 1.90 -10.79 -0.02 -1.58 16 3 C -0.15 -3.38 8.56 71.99 0.62 -2.76 16 4 C -0.07 -1.70 0.30 -52.93 -0.02 -1.71 16 5 C -0.15 -3.73 7.99 71.98 0.58 -3.16 16 6 C -0.15 -3.08 6.56 71.98 0.47 -2.61 16 7 C 0.53 16.83 6.10 87.66 0.54 17.37 16 8 O -0.58 -21.72 14.17 -3.03 -0.04 -21.77 16 9 N -0.61 -18.75 3.32 -811.35 -2.70 -21.45 16 10 C 0.11 3.26 6.38 86.93 0.55 3.81 16 11 C -0.10 -2.64 3.53 -9.32 -0.03 -2.67 16 12 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 13 C -0.13 -3.43 8.85 71.98 0.64 -2.80 16 14 C 0.16 5.33 3.36 46.18 0.16 5.48 16 15 H 0.08 2.67 8.12 -2.39 -0.02 2.65 16 16 N -0.74 -31.09 4.42 -317.32 -1.40 -32.49 16 17 C -0.22 -11.36 10.46 84.03 0.88 -10.48 16 18 H 0.07 3.94 8.06 -2.91 -0.02 3.91 16 19 C -0.05 -3.02 5.50 84.86 0.47 -2.55 16 20 N -0.98 -60.26 13.97 21.65 0.30 -59.95 16 21 Si 0.94 44.54 27.73 68.60 1.90 46.44 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 24 H -0.26 -11.75 6.52 99.48 0.65 -11.10 16 25 C 0.07 2.16 4.75 86.73 0.41 2.57 16 26 H 0.07 1.03 6.11 -2.39 -0.01 1.01 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.00 6.39 -2.39 -0.02 0.98 16 29 H 0.05 1.42 8.02 -2.39 -0.02 1.40 16 30 H 0.06 1.23 6.83 -2.39 -0.02 1.21 16 31 H 0.05 1.34 5.76 -2.38 -0.01 1.32 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.66 5.38 -2.39 -0.01 1.64 16 34 H 0.09 1.91 6.33 -2.39 -0.02 1.90 16 35 H 0.04 1.20 8.14 -2.38 -0.02 1.19 16 36 H 0.06 1.20 7.28 -2.39 -0.02 1.18 16 37 H 0.09 1.45 5.73 -2.39 -0.01 1.44 16 38 H 0.07 1.53 5.02 -2.39 -0.01 1.51 16 39 H 0.05 1.54 7.99 -2.39 -0.02 1.52 16 40 H 0.08 2.21 7.99 -2.39 -0.02 2.19 16 41 H 0.04 1.13 6.37 -2.39 -0.02 1.12 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.36 15.42 3.96 -92.71 -0.37 15.06 16 45 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.10 2.36 5.67 -2.39 -0.01 2.34 16 47 H 0.06 2.24 5.63 -2.39 -0.01 2.23 16 Total: -1.00 -65.92 340.95 4.45 -61.47 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.53 Total: 30.65 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 5.85 Total: -2.90 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -3.80 Total: -113.89 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.04 Total: -21.77 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.90 Total: 46.44 kcal Total: -65.92 4.45 -61.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054698522.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.903 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds