Wall clock time and date at job start Tue Mar 31 2020 06:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47196 * 2 1 4 4 C 1.52994 * 109.47506 * 120.00018 * 2 1 3 5 5 C 1.53002 * 109.46908 * 59.99805 * 4 2 1 6 6 C 1.53007 * 109.47285 * 300.00084 * 4 2 1 7 7 C 1.50697 * 109.47565 * 180.02562 * 4 2 1 8 8 O 1.21281 * 119.99684 * 353.32293 * 7 4 2 9 9 N 1.34779 * 120.00247 * 173.32552 * 7 4 2 10 10 C 1.47744 * 125.82443 * 174.45610 * 9 7 4 11 11 C 1.54911 * 104.84221 * 155.82594 * 10 9 7 12 12 H 1.08994 * 111.03721 * 279.00335 * 11 10 9 13 13 N 1.46506 * 111.00158 * 155.16689 * 11 10 9 14 14 C 1.36942 * 119.99862 * 92.80584 * 13 11 10 15 15 H 1.07994 * 119.99872 * 359.97438 * 14 13 11 16 16 C 1.38813 * 119.99696 * 179.97438 * 14 13 11 17 17 N 1.31614 * 119.99628 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00176 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47128 * 89.99609 * 18 16 14 20 20 H 1.48499 * 109.47227 * 209.99888 * 18 16 14 21 21 H 1.48499 * 109.47356 * 329.99803 * 18 16 14 22 22 C 1.55160 * 101.58191 * 37.09338 * 11 10 9 23 23 H 1.09000 * 110.71749 * 82.86011 * 22 11 10 24 24 C 1.52992 * 110.87015 * 206.06394 * 22 11 10 25 25 C 1.47020 * 125.64489 * 354.54195 * 9 7 4 26 26 H 1.08997 * 109.46769 * 300.00249 * 1 2 3 27 27 H 1.09003 * 109.46806 * 59.99999 * 1 2 3 28 28 H 1.08999 * 109.46734 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47379 * 240.00332 * 2 1 3 30 30 H 1.09004 * 109.47351 * 300.00277 * 3 2 1 31 31 H 1.09005 * 109.47426 * 59.99901 * 3 2 1 32 32 H 1.09001 * 109.47439 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46643 * 182.05670 * 5 4 2 34 34 H 1.08998 * 109.47150 * 302.05135 * 5 4 2 35 35 H 1.09000 * 109.47114 * 62.06273 * 5 4 2 36 36 H 1.08997 * 109.46958 * 283.55010 * 6 4 2 37 37 H 1.09007 * 109.46482 * 43.54135 * 6 4 2 38 38 H 1.09000 * 109.47527 * 163.54220 * 6 4 2 39 39 H 1.09002 * 110.29360 * 37.01901 * 10 9 7 40 40 H 1.09000 * 110.52452 * 274.75097 * 10 9 7 41 41 H 0.96994 * 119.99621 * 272.80121 * 13 11 10 42 42 H 0.97002 * 119.99751 * 180.02562 * 17 16 14 43 43 H 1.09009 * 109.47195 * 175.06542 * 24 22 11 44 44 H 1.09000 * 109.47259 * 295.06287 * 24 22 11 45 45 H 1.08994 * 109.47524 * 55.06392 * 24 22 11 46 46 H 1.09001 * 109.88326 * 61.61242 * 25 9 7 47 47 H 1.08998 * 109.88627 * 300.59679 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2492 6 6 1.5301 0.0000 2.4985 7 6 3.5471 -0.7207 1.2495 8 8 4.1535 -0.3044 0.2852 9 7 4.2209 -1.1827 2.3214 10 6 5.6859 -1.3489 2.4160 11 6 5.9950 -1.2881 3.9328 12 1 6.0353 -0.2567 4.2828 13 7 7.2405 -1.9942 4.2436 14 6 8.4253 -1.3086 4.2806 15 1 8.4417 -0.2475 4.0803 16 6 9.6053 -1.9775 4.5756 17 7 10.7441 -1.3187 4.6107 18 14 9.5771 -3.8130 4.9213 19 1 9.7630 -4.5589 3.6507 20 1 10.6737 -4.1564 5.8619 21 1 8.2723 -4.1828 5.5261 22 6 4.7707 -2.0308 4.5302 23 1 4.9197 -3.1100 4.4954 24 6 4.4997 -1.5696 5.9636 25 6 3.6193 -1.6081 3.5936 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.8631 -2.6668 2.1570 34 1 0.4407 -2.1639 1.2124 35 1 1.9232 -2.6881 0.3782 36 1 2.1112 0.9086 2.6561 37 1 0.4797 0.2591 2.3651 38 1 1.6359 -0.6538 3.3642 39 1 6.1930 -0.5383 1.8927 40 1 5.9886 -2.3123 2.0055 41 1 7.2258 -2.9473 4.4231 42 1 11.5688 -1.7862 4.8165 43 1 3.5863 -2.0388 6.3297 44 1 5.3359 -1.8556 6.6015 45 1 4.3835 -0.4860 5.9808 46 1 2.9508 -2.4521 3.4237 47 1 3.0657 -0.7804 4.0370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054698524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:00 Heat of formation + Delta-G solvation = -27.297127 kcal Electronic energy + Delta-G solvation = -23933.040946 eV Core-core repulsion = 20730.023139 eV Total energy + Delta-G solvation = -3203.017807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66638 -38.23926 -36.53583 -34.38517 -32.58485 -31.48410 -30.96057 -28.27238 -27.63620 -26.97365 -26.32476 -24.28220 -23.31162 -21.49972 -20.29536 -19.95302 -18.45840 -17.59890 -16.44812 -16.26790 -15.58871 -15.02206 -14.62763 -14.39137 -14.20708 -13.76841 -13.49378 -13.33931 -13.32191 -13.18075 -12.80021 -12.57086 -12.47432 -12.25129 -11.99774 -11.77963 -11.72730 -11.54400 -11.39127 -11.36712 -11.16166 -10.99411 -10.80785 -10.70206 -10.55409 -10.45326 -10.31352 -10.01381 -9.64781 -9.34971 -9.02427 -8.32276 -7.37896 -5.83336 -3.21228 2.83233 3.18374 3.32404 3.35659 3.41629 4.38207 4.52483 4.52830 4.67957 4.71612 4.93964 4.96934 5.11755 5.14606 5.20925 5.32188 5.34813 5.39177 5.50759 5.53507 5.59415 5.61370 5.65260 5.74430 5.75004 5.75749 5.77585 5.80427 5.86327 5.96095 6.05495 6.06756 6.10877 6.16709 6.29931 6.34251 6.41720 6.45058 6.50802 6.57545 6.77836 7.80480 7.91339 8.35057 8.40370 9.11729 9.83594 10.01600 11.34481 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028075 B = 0.004200 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.071862 B = 6665.744316 C = 7037.078976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.070 4.070 3 C -0.157 4.157 4 C -0.073 4.073 5 C -0.146 4.146 6 C -0.157 4.157 7 C 0.535 3.465 8 O -0.540 6.540 9 N -0.612 5.612 10 C 0.081 3.919 11 C 0.183 3.817 12 H 0.076 0.924 13 N -0.734 5.734 14 C -0.252 4.252 15 H 0.092 0.908 16 C 0.010 3.990 17 N -0.929 5.929 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 C -0.120 4.120 23 H 0.080 0.920 24 C -0.135 4.135 25 C 0.098 3.902 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.364 0.636 42 H 0.261 0.739 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.065 0.935 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.437 -0.465 -2.867 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 C -0.214 4.214 4 C -0.076 4.076 5 C -0.203 4.203 6 C -0.214 4.214 7 C 0.323 3.677 8 O -0.417 6.417 9 N -0.346 5.346 10 C -0.044 4.044 11 C 0.071 3.929 12 H 0.094 0.906 13 N -0.375 5.375 14 C -0.381 4.381 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.576 5.576 18 Si 0.713 3.287 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.140 4.140 23 H 0.099 0.901 24 C -0.192 4.192 25 C -0.025 4.025 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.197 0.803 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.915 -0.032 -3.432 23.171 hybrid contribution 0.201 -1.430 0.199 1.458 sum -22.714 -1.462 -3.234 22.990 Atomic orbital electron populations 1.22013 0.95228 1.01733 1.01822 1.20879 0.94882 0.96704 0.96419 1.22031 1.03548 0.94975 1.00837 1.20743 0.91624 0.97466 0.97775 1.21990 1.01654 0.93951 1.02719 1.22284 1.01870 1.00829 0.96426 1.20200 0.89209 0.76811 0.81482 1.90648 1.70297 1.46624 1.34176 1.48523 1.08772 1.63772 1.13531 1.23362 0.78149 1.01783 1.01117 1.21340 0.84989 0.96287 0.90282 0.90633 1.42625 1.03151 1.07439 1.84280 1.19081 0.83241 0.94590 1.41201 0.89016 1.24672 0.95238 0.97433 1.01333 1.69699 0.97825 1.35133 1.54952 0.86574 0.77035 0.86960 0.78082 1.20990 1.21633 1.20250 1.22573 0.95412 1.01038 0.94953 0.90126 1.21669 1.01384 1.01035 0.95153 1.22502 0.96275 0.99406 0.84323 0.92267 0.92646 0.92470 0.90661 0.93178 0.93195 0.90417 0.91701 0.91190 0.92268 0.92024 0.91203 0.91032 0.90657 0.91765 0.80311 0.92914 0.93158 0.91505 0.92546 0.91658 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.54 37.16 0.32 -0.90 16 2 C -0.07 -0.76 1.90 -90.62 -0.17 -0.93 16 3 C -0.16 -1.84 8.56 37.16 0.32 -1.52 16 4 C -0.07 -0.81 0.30 -155.66 -0.05 -0.86 16 5 C -0.15 -1.37 8.00 37.16 0.30 -1.07 16 6 C -0.16 -1.44 6.57 37.16 0.24 -1.20 16 7 C 0.53 8.23 6.11 -10.99 -0.07 8.16 16 8 O -0.54 -10.32 14.18 5.56 0.08 -10.25 16 9 N -0.61 -9.27 3.33 -170.26 -0.57 -9.84 16 10 C 0.08 1.48 6.65 -2.35 -0.02 1.46 16 11 C 0.18 3.34 3.17 -65.78 -0.21 3.13 16 12 H 0.08 1.46 8.00 -51.93 -0.42 1.04 16 13 N -0.73 -16.50 5.05 -51.35 -0.26 -16.75 16 14 C -0.25 -6.88 10.44 -15.06 -0.16 -7.04 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 16 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 17 N -0.93 -28.77 13.97 55.49 0.78 -27.99 16 18 Si 0.88 21.51 27.74 -169.99 -4.71 16.80 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 22 C -0.12 -1.67 3.19 -88.78 -0.28 -1.95 16 23 H 0.08 1.13 8.00 -51.93 -0.42 0.71 16 24 C -0.13 -1.66 9.14 37.15 0.34 -1.33 16 25 C 0.10 1.17 4.60 -3.06 -0.01 1.16 16 26 H 0.06 0.43 6.11 -51.93 -0.32 0.11 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.41 6.38 -51.93 -0.33 0.08 16 29 H 0.07 0.93 8.03 -51.93 -0.42 0.52 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.53 6.83 -51.93 -0.35 0.17 16 32 H 0.08 1.16 5.76 -51.93 -0.30 0.86 16 33 H 0.06 0.58 5.36 -51.93 -0.28 0.30 16 34 H 0.07 0.52 6.32 -51.93 -0.33 0.19 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.64 7.27 -51.93 -0.38 0.26 16 37 H 0.07 0.53 5.73 -51.93 -0.30 0.23 16 38 H 0.07 0.59 5.02 -51.93 -0.26 0.33 16 39 H 0.07 1.55 8.00 -51.93 -0.42 1.13 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.36 8.00 5.62 -40.82 -0.23 7.77 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 46 H 0.07 0.66 5.72 -51.93 -0.30 0.37 16 47 H 0.08 0.80 5.35 -51.93 -0.28 0.52 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -31.64 344.54 -6.90 -38.54 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.86 Total: 6.99 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 0.46 Total: -2.70 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.05 Total: -54.58 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.64 -6.90 -38.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054698524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.245 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds