Wall clock time and date at job start Tue Mar 31 2020 06:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47196 * 2 1 4 4 C 1.52994 * 109.47506 * 120.00018 * 2 1 3 5 5 C 1.53002 * 109.46908 * 59.99805 * 4 2 1 6 6 C 1.53007 * 109.47285 * 300.00084 * 4 2 1 7 7 C 1.50697 * 109.47565 * 180.02562 * 4 2 1 8 8 O 1.21281 * 119.99684 * 353.32293 * 7 4 2 9 9 N 1.34779 * 120.00247 * 173.32552 * 7 4 2 10 10 C 1.47744 * 125.82443 * 174.45610 * 9 7 4 11 11 C 1.54911 * 104.84221 * 155.82594 * 10 9 7 12 12 H 1.08994 * 111.03721 * 279.00335 * 11 10 9 13 13 N 1.46506 * 111.00158 * 155.16689 * 11 10 9 14 14 C 1.36942 * 119.99862 * 92.80584 * 13 11 10 15 15 H 1.07994 * 119.99872 * 359.97438 * 14 13 11 16 16 C 1.38813 * 119.99696 * 179.97438 * 14 13 11 17 17 N 1.31614 * 119.99628 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00176 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47128 * 89.99609 * 18 16 14 20 20 H 1.48499 * 109.47227 * 209.99888 * 18 16 14 21 21 H 1.48499 * 109.47356 * 329.99803 * 18 16 14 22 22 C 1.55160 * 101.58191 * 37.09338 * 11 10 9 23 23 H 1.09000 * 110.71749 * 82.86011 * 22 11 10 24 24 C 1.52992 * 110.87015 * 206.06394 * 22 11 10 25 25 C 1.47020 * 125.64489 * 354.54195 * 9 7 4 26 26 H 1.08997 * 109.46769 * 300.00249 * 1 2 3 27 27 H 1.09003 * 109.46806 * 59.99999 * 1 2 3 28 28 H 1.08999 * 109.46734 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47379 * 240.00332 * 2 1 3 30 30 H 1.09004 * 109.47351 * 300.00277 * 3 2 1 31 31 H 1.09005 * 109.47426 * 59.99901 * 3 2 1 32 32 H 1.09001 * 109.47439 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46643 * 182.05670 * 5 4 2 34 34 H 1.08998 * 109.47150 * 302.05135 * 5 4 2 35 35 H 1.09000 * 109.47114 * 62.06273 * 5 4 2 36 36 H 1.08997 * 109.46958 * 283.55010 * 6 4 2 37 37 H 1.09007 * 109.46482 * 43.54135 * 6 4 2 38 38 H 1.09000 * 109.47527 * 163.54220 * 6 4 2 39 39 H 1.09002 * 110.29360 * 37.01901 * 10 9 7 40 40 H 1.09000 * 110.52452 * 274.75097 * 10 9 7 41 41 H 0.96994 * 119.99621 * 272.80121 * 13 11 10 42 42 H 0.97002 * 119.99751 * 180.02562 * 17 16 14 43 43 H 1.09009 * 109.47195 * 175.06542 * 24 22 11 44 44 H 1.09000 * 109.47259 * 295.06287 * 24 22 11 45 45 H 1.08994 * 109.47524 * 55.06392 * 24 22 11 46 46 H 1.09001 * 109.88326 * 61.61242 * 25 9 7 47 47 H 1.08998 * 109.88627 * 300.59679 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5301 -2.1637 1.2492 6 6 1.5301 0.0000 2.4985 7 6 3.5471 -0.7207 1.2495 8 8 4.1535 -0.3044 0.2852 9 7 4.2209 -1.1827 2.3214 10 6 5.6859 -1.3489 2.4160 11 6 5.9950 -1.2881 3.9328 12 1 6.0353 -0.2567 4.2828 13 7 7.2405 -1.9942 4.2436 14 6 8.4253 -1.3086 4.2806 15 1 8.4417 -0.2475 4.0803 16 6 9.6053 -1.9775 4.5756 17 7 10.7441 -1.3187 4.6107 18 14 9.5771 -3.8130 4.9213 19 1 9.7630 -4.5589 3.6507 20 1 10.6737 -4.1564 5.8619 21 1 8.2723 -4.1828 5.5261 22 6 4.7707 -2.0308 4.5302 23 1 4.9197 -3.1100 4.4954 24 6 4.4997 -1.5696 5.9636 25 6 3.6193 -1.6081 3.5936 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.8631 -2.6668 2.1570 34 1 0.4407 -2.1639 1.2124 35 1 1.9232 -2.6881 0.3782 36 1 2.1112 0.9086 2.6561 37 1 0.4797 0.2591 2.3651 38 1 1.6359 -0.6538 3.3642 39 1 6.1930 -0.5383 1.8927 40 1 5.9886 -2.3123 2.0055 41 1 7.2258 -2.9473 4.4231 42 1 11.5688 -1.7862 4.8165 43 1 3.5863 -2.0388 6.3297 44 1 5.3359 -1.8556 6.6015 45 1 4.3835 -0.4860 5.9808 46 1 2.9508 -2.4521 3.4237 47 1 3.0657 -0.7804 4.0370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054698524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:59 Heat of formation + Delta-G solvation = -48.303073 kcal Electronic energy + Delta-G solvation = -23933.951832 eV Core-core repulsion = 20730.023139 eV Total energy + Delta-G solvation = -3203.928694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79589 -39.48450 -37.64310 -36.12865 -34.06079 -32.82444 -32.37432 -29.52693 -28.64719 -27.77078 -27.32221 -25.84006 -24.58295 -22.89551 -21.62949 -21.16342 -19.73955 -19.31479 -17.73283 -17.41075 -16.76586 -16.36650 -16.03878 -15.60462 -15.27023 -15.14283 -14.83442 -14.66101 -14.49824 -14.32240 -14.00242 -13.79060 -13.54700 -13.24456 -13.07215 -13.00992 -12.93546 -12.88883 -12.56531 -12.41174 -12.19895 -12.16576 -12.09775 -11.94382 -11.87390 -11.77869 -11.42977 -11.37035 -11.24011 -11.01342 -10.51700 -9.65680 -9.34163 -8.05397 -5.41486 1.36516 1.41403 1.48293 1.64501 1.97808 2.46433 3.23494 3.40741 3.45665 3.63045 3.73779 3.87889 3.96289 4.06780 4.21555 4.27432 4.36215 4.37452 4.42171 4.52965 4.58419 4.64974 4.75886 4.81375 4.83929 4.87693 4.88863 4.95776 5.01894 5.04522 5.07257 5.10803 5.17412 5.21917 5.24254 5.28196 5.32717 5.39812 5.50046 5.54334 5.62558 5.73338 6.18102 6.61287 7.03048 7.18850 7.76039 7.96771 9.16004 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028075 B = 0.004200 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.071862 B = 6665.744316 C = 7037.078976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.155 4.155 4 C -0.065 4.065 5 C -0.144 4.144 6 C -0.156 4.156 7 C 0.524 3.476 8 O -0.589 6.589 9 N -0.612 5.612 10 C 0.088 3.912 11 C 0.176 3.824 12 H 0.059 0.941 13 N -0.734 5.734 14 C -0.238 4.238 15 H 0.052 0.948 16 C -0.060 4.060 17 N -0.983 5.983 18 Si 0.957 3.043 19 H -0.282 1.282 20 H -0.295 1.295 21 H -0.242 1.242 22 C -0.108 4.108 23 H 0.089 0.911 24 C -0.132 4.132 25 C 0.099 3.901 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.035 0.965 40 H 0.055 0.945 41 H 0.370 0.630 42 H 0.259 0.741 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.100 0.900 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.968 -2.593 -1.418 28.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 C -0.212 4.212 4 C -0.068 4.068 5 C -0.200 4.200 6 C -0.213 4.213 7 C 0.315 3.685 8 O -0.470 6.470 9 N -0.345 5.345 10 C -0.038 4.038 11 C 0.065 3.935 12 H 0.077 0.923 13 N -0.376 5.376 14 C -0.369 4.369 15 H 0.070 0.930 16 C -0.252 4.252 17 N -0.633 5.633 18 Si 0.783 3.217 19 H -0.209 1.209 20 H -0.222 1.222 21 H -0.166 1.166 22 C -0.127 4.127 23 H 0.107 0.893 24 C -0.189 4.189 25 C -0.023 4.023 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.204 0.796 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.118 0.882 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -27.537 -2.167 -1.968 27.692 hybrid contribution 1.613 -0.619 -0.346 1.762 sum -25.925 -2.786 -2.315 26.177 Atomic orbital electron populations 1.21968 0.92205 1.03031 1.02828 1.20900 0.97213 0.95446 0.95500 1.21986 1.00935 0.96374 1.01915 1.20797 0.87673 0.99364 0.99011 1.22024 1.03429 0.92029 1.02562 1.22320 1.03009 1.00236 0.95688 1.21248 0.91275 0.75473 0.80520 1.90633 1.71716 1.48567 1.36065 1.48585 1.07141 1.63783 1.14993 1.22950 0.80701 0.99666 1.00468 1.21473 0.85491 0.95999 0.90516 0.92337 1.42509 1.02966 1.07659 1.84492 1.18988 0.85330 0.93206 1.39349 0.93034 1.25541 0.94640 1.02960 1.02071 1.69896 0.98684 1.37471 1.57238 0.85393 0.78364 0.80120 0.77803 1.20882 1.22169 1.16564 1.22527 0.93111 1.00837 0.96273 0.89256 1.21665 1.02380 1.01499 0.93375 1.22775 0.95789 1.01566 0.82131 0.90715 0.92257 0.90980 0.93079 0.92412 0.91786 0.94410 0.90680 0.88199 0.93748 0.93551 0.88586 0.89252 0.94635 0.92712 0.79555 0.93240 0.89308 0.93524 0.92420 0.88215 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.54 71.98 0.61 -1.17 16 2 C -0.07 -1.46 1.90 -10.79 -0.02 -1.48 16 3 C -0.15 -3.62 8.56 71.98 0.62 -3.00 16 4 C -0.07 -1.30 0.30 -52.93 -0.02 -1.31 16 5 C -0.14 -2.13 8.00 71.98 0.58 -1.56 16 6 C -0.16 -2.23 6.57 71.98 0.47 -1.76 16 7 C 0.52 16.12 6.11 87.66 0.54 16.65 16 8 O -0.59 -23.88 14.18 -3.03 -0.04 -23.92 16 9 N -0.61 -18.11 3.33 -810.97 -2.70 -20.81 16 10 C 0.09 3.35 6.65 86.79 0.58 3.93 16 11 C 0.18 6.46 3.17 46.38 0.15 6.61 16 12 H 0.06 2.35 8.00 -2.39 -0.02 2.33 16 13 N -0.73 -33.19 5.05 -316.36 -1.60 -34.79 16 14 C -0.24 -13.53 10.44 84.03 0.88 -12.65 16 15 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 16 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 17 N -0.98 -63.40 13.97 21.65 0.30 -63.10 16 18 Si 0.96 44.65 27.74 68.60 1.90 46.55 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 20 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.24 -9.79 6.52 99.48 0.65 -9.14 16 22 C -0.11 -2.69 3.19 -9.60 -0.03 -2.72 16 23 H 0.09 2.14 8.00 -2.39 -0.02 2.12 16 24 C -0.13 -2.79 9.14 71.98 0.66 -2.13 16 25 C 0.10 2.01 4.60 86.73 0.40 2.41 16 26 H 0.07 0.72 6.11 -2.39 -0.01 0.70 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.70 6.38 -2.39 -0.02 0.69 16 29 H 0.05 1.27 8.03 -2.38 -0.02 1.25 16 30 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.06 1.27 6.83 -2.38 -0.02 1.25 16 32 H 0.04 1.19 5.76 -2.39 -0.01 1.17 16 33 H 0.07 0.96 5.36 -2.38 -0.01 0.95 16 34 H 0.10 0.93 6.32 -2.39 -0.02 0.91 16 35 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 0.83 7.27 -2.39 -0.02 0.81 16 37 H 0.10 0.92 5.73 -2.38 -0.01 0.91 16 38 H 0.09 0.96 5.02 -2.39 -0.01 0.95 16 39 H 0.03 1.59 8.00 -2.39 -0.02 1.57 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.37 15.71 5.62 -92.71 -0.52 15.19 16 42 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 43 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 46 H 0.10 1.45 5.72 -2.39 -0.01 1.44 16 47 H 0.10 1.62 5.35 -2.39 -0.01 1.61 16 Total: -1.00 -75.61 344.54 4.11 -71.50 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.38 Total: 25.82 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.87 Total: -1.26 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -4.00 Total: -118.69 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.04 Total: -23.92 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.90 Total: 46.55 kcal Total: -75.61 4.11 -71.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054698524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.196 kcal (2) G-P(sol) polarization free energy of solvation -75.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds