Wall clock time and date at job start Tue Mar 31 2020 06:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47314 * 2 1 4 4 C 1.52998 * 109.47109 * 120.00776 * 2 1 3 5 5 C 1.52996 * 109.46893 * 299.99508 * 4 2 1 6 6 C 1.53006 * 109.47041 * 179.97438 * 4 2 1 7 7 C 1.50699 * 109.47408 * 59.99566 * 4 2 1 8 8 O 1.21283 * 119.99898 * 359.86302 * 7 4 2 9 9 N 1.34775 * 119.99865 * 179.85962 * 7 4 2 10 10 C 1.47018 * 125.65113 * 354.64974 * 9 7 4 11 11 C 1.54322 * 107.40593 * 178.82464 * 10 9 7 12 12 H 1.09000 * 110.72218 * 96.24170 * 11 10 9 13 13 C 1.52992 * 110.72261 * 219.51982 * 11 10 9 14 14 C 1.55408 * 102.82640 * 337.97229 * 11 10 9 15 15 H 1.08993 * 110.89294 * 277.26892 * 14 11 10 16 16 N 1.46496 * 111.03756 * 153.46951 * 14 11 10 17 17 C 1.36937 * 119.99966 * 161.22805 * 16 14 11 18 18 H 1.08007 * 119.99891 * 0.02562 * 17 16 14 19 19 C 1.38808 * 120.00563 * 180.02562 * 17 16 14 20 20 N 1.31625 * 119.99478 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00438 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47121 * 90.00083 * 21 19 17 23 23 H 1.48502 * 109.47198 * 210.00290 * 21 19 17 24 24 H 1.48502 * 109.47133 * 330.00182 * 21 19 17 25 25 C 1.47423 * 125.64758 * 174.59671 * 9 7 4 26 26 H 1.08997 * 109.47572 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46690 * 299.99659 * 1 2 3 28 28 H 1.09003 * 109.47152 * 59.99217 * 1 2 3 29 29 H 1.08999 * 109.46690 * 240.00341 * 2 1 3 30 30 H 1.09010 * 109.47114 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47650 * 300.00477 * 3 2 1 32 32 H 1.08999 * 109.46964 * 60.00508 * 3 2 1 33 33 H 1.09007 * 109.47205 * 188.58323 * 5 4 2 34 34 H 1.09001 * 109.47319 * 308.57984 * 5 4 2 35 35 H 1.08995 * 109.47593 * 68.58380 * 5 4 2 36 36 H 1.08995 * 109.47018 * 290.35334 * 6 4 2 37 37 H 1.09000 * 109.46853 * 50.35022 * 6 4 2 38 38 H 1.09000 * 109.47379 * 170.34756 * 6 4 2 39 39 H 1.09007 * 109.87860 * 298.31510 * 10 9 7 40 40 H 1.08999 * 109.88472 * 59.32518 * 10 9 7 41 41 H 1.09003 * 109.47508 * 58.54425 * 13 11 10 42 42 H 1.09000 * 109.47710 * 178.54442 * 13 11 10 43 43 H 1.09002 * 109.47482 * 298.54492 * 13 11 10 44 44 H 0.96999 * 120.00404 * 341.22911 * 16 14 11 45 45 H 0.96998 * 119.99842 * 180.02562 * 20 19 17 46 46 H 1.09006 * 110.36940 * 323.01176 * 25 9 7 47 47 H 1.09003 * 110.36645 * 85.21974 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.5300 -0.0002 2.4984 6 6 3.5700 -0.7220 1.2488 7 6 1.5376 -2.1422 1.2490 8 8 0.8382 -2.5380 0.3407 9 7 1.8655 -2.9729 2.2584 10 6 2.7898 -2.6616 3.3585 11 6 2.8340 -3.8936 4.2869 12 1 3.6868 -4.5281 4.0455 13 6 2.8753 -3.4640 5.7547 14 6 1.4993 -4.6197 3.9604 15 1 0.6716 -4.1805 4.5171 16 7 1.6039 -6.0567 4.2254 17 6 0.4700 -6.8094 4.3764 18 1 -0.5015 -6.3436 4.2998 19 6 0.5690 -8.1708 4.6281 20 7 1.7529 -8.7383 4.7220 21 14 -0.9779 -9.1977 4.8334 22 1 -1.4010 -9.7252 3.5113 23 1 -0.7016 -10.3305 5.7531 24 1 -2.0609 -8.3537 5.3992 25 6 1.3560 -4.3440 2.4427 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 2.0132 -0.4180 3.3818 34 1 1.7628 1.0621 2.4252 35 1 0.4509 -0.1310 2.5785 36 1 3.9329 -1.3778 0.4575 37 1 3.9336 0.2910 1.0764 38 1 3.9335 -1.0794 2.2122 39 1 3.7849 -2.4612 2.9611 40 1 2.4297 -1.7938 3.9109 41 1 1.9980 -2.8579 5.9808 42 1 2.8799 -4.3482 6.3921 43 1 3.7773 -2.8799 5.9372 44 1 2.4764 -6.4750 4.2939 45 1 1.8221 -9.6897 4.8975 46 1 0.3095 -4.4032 2.1436 47 1 1.9544 -5.0515 1.8688 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054698526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:03 Heat of formation + Delta-G solvation = -29.293036 kcal Electronic energy + Delta-G solvation = -23888.286658 eV Core-core repulsion = 20685.182302 eV Total energy + Delta-G solvation = -3203.104356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61288 -38.13707 -36.47113 -34.24690 -32.55843 -31.42467 -30.58616 -28.05305 -27.46110 -26.81506 -26.32934 -24.30004 -23.46169 -21.58729 -20.16473 -19.81140 -18.37693 -17.19741 -16.38346 -16.08464 -15.71900 -14.89423 -14.62918 -14.37684 -14.07463 -13.77488 -13.44790 -13.32029 -13.12976 -13.03199 -12.96200 -12.51429 -12.35694 -12.15126 -11.93395 -11.64329 -11.59892 -11.46178 -11.34910 -11.11460 -11.01698 -10.93155 -10.77662 -10.63759 -10.51661 -10.35757 -10.22370 -9.88803 -9.73805 -9.24785 -8.97935 -8.24173 -7.06406 -5.83648 -3.13976 2.88119 3.26840 3.41788 3.47572 3.48320 4.43229 4.52777 4.58958 4.73005 4.84189 5.01715 5.05525 5.15683 5.18707 5.24943 5.38834 5.42555 5.51741 5.54029 5.61079 5.63555 5.70749 5.73009 5.79580 5.82633 5.86368 5.88208 5.91996 5.98928 6.02135 6.12026 6.14292 6.21313 6.27642 6.38553 6.41966 6.50191 6.55563 6.59539 6.67872 6.92484 7.66081 7.88000 8.33964 8.46478 9.46189 9.99581 10.34549 11.38428 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025984 B = 0.004128 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.342873 B = 6780.893178 C = 7394.772118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.069 4.069 3 C -0.151 4.151 4 C -0.073 4.073 5 C -0.152 4.152 6 C -0.155 4.155 7 C 0.533 3.467 8 O -0.541 6.541 9 N -0.610 5.610 10 C 0.097 3.903 11 C -0.115 4.115 12 H 0.084 0.916 13 C -0.134 4.134 14 C 0.178 3.822 15 H 0.063 0.937 16 N -0.711 5.711 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.008 4.008 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.082 3.918 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.068 0.932 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 20.312 -3.447 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.088 4.088 3 C -0.208 4.208 4 C -0.076 4.076 5 C -0.209 4.209 6 C -0.212 4.212 7 C 0.321 3.679 8 O -0.419 6.419 9 N -0.343 5.343 10 C -0.026 4.026 11 C -0.134 4.134 12 H 0.102 0.898 13 C -0.192 4.192 14 C 0.065 3.935 15 H 0.081 0.919 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.043 4.043 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.983 20.032 -3.940 20.801 hybrid contribution -0.477 -0.852 0.021 0.977 sum 3.506 19.180 -3.919 19.888 Atomic orbital electron populations 1.22116 0.94765 1.04218 1.00632 1.20854 0.96580 0.95028 0.96340 1.22017 1.00967 0.96024 1.01796 1.20730 0.96865 0.92237 0.97768 1.22132 1.01878 1.00624 0.96238 1.22171 0.93110 1.02835 1.03098 1.20206 0.80241 0.86653 0.80752 1.90614 1.39006 1.77122 1.35195 1.48483 1.45322 1.15870 1.24664 1.22530 0.93288 0.98554 0.88250 1.22528 1.00429 0.95668 0.94821 0.89767 1.21663 1.00727 1.01659 0.95109 1.21421 0.94324 0.86570 0.91150 0.91898 1.42273 1.06884 1.01418 1.84464 1.19241 0.86695 0.90200 1.41568 0.91031 1.24748 0.96686 0.96782 1.02250 1.69660 1.21519 1.10999 1.55624 0.86187 0.82377 0.80042 0.77561 1.21588 1.21724 1.20658 1.23386 0.99491 0.80646 1.00818 0.89775 0.93296 0.93383 0.90860 0.92435 0.92700 0.92323 0.91325 0.91261 0.92010 0.92333 0.91211 0.91066 0.91356 0.90935 0.92851 0.91397 0.93220 0.77889 0.93382 0.91329 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.53 37.16 0.32 -1.64 16 2 C -0.07 -0.78 1.92 -90.63 -0.17 -0.95 16 3 C -0.15 -1.27 8.53 37.15 0.32 -0.95 16 4 C -0.07 -0.84 0.30 -155.66 -0.05 -0.89 16 5 C -0.15 -1.50 7.46 37.16 0.28 -1.22 16 6 C -0.16 -1.51 7.90 37.16 0.29 -1.21 16 7 C 0.53 8.48 6.25 -10.99 -0.07 8.41 16 8 O -0.54 -10.54 13.95 5.56 0.08 -10.46 16 9 N -0.61 -9.65 3.31 -170.52 -0.56 -10.21 16 10 C 0.10 1.23 4.80 -3.07 -0.01 1.22 16 11 C -0.11 -1.70 3.19 -88.65 -0.28 -1.99 16 12 H 0.08 1.31 8.00 -51.93 -0.42 0.89 16 13 C -0.13 -1.75 9.14 37.15 0.34 -1.41 16 14 C 0.18 3.39 3.14 -65.65 -0.21 3.18 16 15 H 0.06 1.24 8.03 -51.93 -0.42 0.82 16 16 N -0.71 -17.03 5.28 -51.22 -0.27 -17.30 16 17 C -0.25 -6.65 9.98 -15.06 -0.15 -6.80 16 18 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 21 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 C 0.08 1.57 6.58 -2.53 -0.02 1.55 16 26 H 0.08 1.29 5.51 -51.93 -0.29 1.01 16 27 H 0.05 0.54 6.63 -51.93 -0.34 0.20 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 30 H 0.06 0.43 6.23 -51.92 -0.32 0.11 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.45 6.25 -51.93 -0.32 0.13 16 33 H 0.07 0.64 4.84 -51.93 -0.25 0.38 16 34 H 0.07 0.55 6.01 -51.93 -0.31 0.24 16 35 H 0.06 0.67 6.90 -51.93 -0.36 0.32 16 36 H 0.06 0.63 8.11 -51.93 -0.42 0.20 16 37 H 0.07 0.55 5.97 -51.93 -0.31 0.24 16 38 H 0.07 0.64 4.75 -51.93 -0.25 0.39 16 39 H 0.07 0.76 5.81 -51.92 -0.30 0.46 16 40 H 0.07 0.80 4.96 -51.93 -0.26 0.54 16 41 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.39 9.80 7.72 -40.82 -0.31 9.49 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 47 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -30.49 346.58 -7.15 -37.64 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.81 Total: 7.69 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 0.49 Total: -3.04 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.11 Total: -54.20 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.49 -7.15 -37.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054698526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.350 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds