Wall clock time and date at job start Tue Mar 31 2020 06:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47314 * 2 1 4 4 C 1.52998 * 109.47109 * 120.00776 * 2 1 3 5 5 C 1.52996 * 109.46893 * 299.99508 * 4 2 1 6 6 C 1.53006 * 109.47041 * 179.97438 * 4 2 1 7 7 C 1.50699 * 109.47408 * 59.99566 * 4 2 1 8 8 O 1.21283 * 119.99898 * 359.86302 * 7 4 2 9 9 N 1.34775 * 119.99865 * 179.85962 * 7 4 2 10 10 C 1.47018 * 125.65113 * 354.64974 * 9 7 4 11 11 C 1.54322 * 107.40593 * 178.82464 * 10 9 7 12 12 H 1.09000 * 110.72218 * 96.24170 * 11 10 9 13 13 C 1.52992 * 110.72261 * 219.51982 * 11 10 9 14 14 C 1.55408 * 102.82640 * 337.97229 * 11 10 9 15 15 H 1.08993 * 110.89294 * 277.26892 * 14 11 10 16 16 N 1.46496 * 111.03756 * 153.46951 * 14 11 10 17 17 C 1.36937 * 119.99966 * 161.22805 * 16 14 11 18 18 H 1.08007 * 119.99891 * 0.02562 * 17 16 14 19 19 C 1.38808 * 120.00563 * 180.02562 * 17 16 14 20 20 N 1.31625 * 119.99478 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00438 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47121 * 90.00083 * 21 19 17 23 23 H 1.48502 * 109.47198 * 210.00290 * 21 19 17 24 24 H 1.48502 * 109.47133 * 330.00182 * 21 19 17 25 25 C 1.47423 * 125.64758 * 174.59671 * 9 7 4 26 26 H 1.08997 * 109.47572 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46690 * 299.99659 * 1 2 3 28 28 H 1.09003 * 109.47152 * 59.99217 * 1 2 3 29 29 H 1.08999 * 109.46690 * 240.00341 * 2 1 3 30 30 H 1.09010 * 109.47114 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47650 * 300.00477 * 3 2 1 32 32 H 1.08999 * 109.46964 * 60.00508 * 3 2 1 33 33 H 1.09007 * 109.47205 * 188.58323 * 5 4 2 34 34 H 1.09001 * 109.47319 * 308.57984 * 5 4 2 35 35 H 1.08995 * 109.47593 * 68.58380 * 5 4 2 36 36 H 1.08995 * 109.47018 * 290.35334 * 6 4 2 37 37 H 1.09000 * 109.46853 * 50.35022 * 6 4 2 38 38 H 1.09000 * 109.47379 * 170.34756 * 6 4 2 39 39 H 1.09007 * 109.87860 * 298.31510 * 10 9 7 40 40 H 1.08999 * 109.88472 * 59.32518 * 10 9 7 41 41 H 1.09003 * 109.47508 * 58.54425 * 13 11 10 42 42 H 1.09000 * 109.47710 * 178.54442 * 13 11 10 43 43 H 1.09002 * 109.47482 * 298.54492 * 13 11 10 44 44 H 0.96999 * 120.00404 * 341.22911 * 16 14 11 45 45 H 0.96998 * 119.99842 * 180.02562 * 20 19 17 46 46 H 1.09006 * 110.36940 * 323.01176 * 25 9 7 47 47 H 1.09003 * 110.36645 * 85.21974 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.5300 -0.0002 2.4984 6 6 3.5700 -0.7220 1.2488 7 6 1.5376 -2.1422 1.2490 8 8 0.8382 -2.5380 0.3407 9 7 1.8655 -2.9729 2.2584 10 6 2.7898 -2.6616 3.3585 11 6 2.8340 -3.8936 4.2869 12 1 3.6868 -4.5281 4.0455 13 6 2.8753 -3.4640 5.7547 14 6 1.4993 -4.6197 3.9604 15 1 0.6716 -4.1805 4.5171 16 7 1.6039 -6.0567 4.2254 17 6 0.4700 -6.8094 4.3764 18 1 -0.5015 -6.3436 4.2998 19 6 0.5690 -8.1708 4.6281 20 7 1.7529 -8.7383 4.7220 21 14 -0.9779 -9.1977 4.8334 22 1 -1.4010 -9.7252 3.5113 23 1 -0.7016 -10.3305 5.7531 24 1 -2.0609 -8.3537 5.3992 25 6 1.3560 -4.3440 2.4427 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 2.0132 -0.4180 3.3818 34 1 1.7628 1.0621 2.4252 35 1 0.4509 -0.1310 2.5785 36 1 3.9329 -1.3778 0.4575 37 1 3.9336 0.2910 1.0764 38 1 3.9335 -1.0794 2.2122 39 1 3.7849 -2.4612 2.9611 40 1 2.4297 -1.7938 3.9109 41 1 1.9980 -2.8579 5.9808 42 1 2.8799 -4.3482 6.3921 43 1 3.7773 -2.8799 5.9372 44 1 2.4764 -6.4750 4.2939 45 1 1.8221 -9.6897 4.8975 46 1 0.3095 -4.4032 2.1436 47 1 1.9544 -5.0515 1.8688 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054698526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:02 Heat of formation + Delta-G solvation = -48.520000 kcal Electronic energy + Delta-G solvation = -23889.120402 eV Core-core repulsion = 20685.182302 eV Total energy + Delta-G solvation = -3203.938100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79002 -39.42816 -37.61869 -36.02142 -34.01294 -32.58207 -32.19765 -29.13707 -28.73501 -27.62148 -27.44067 -26.02524 -24.68697 -22.94486 -21.43636 -21.14112 -19.50059 -19.11736 -17.66207 -17.36736 -16.88557 -16.36551 -15.93710 -15.50159 -15.32482 -15.25522 -14.80192 -14.58305 -14.42428 -14.30714 -14.00439 -13.61006 -13.54221 -13.05618 -13.03133 -12.94098 -12.88464 -12.82248 -12.56003 -12.41790 -12.20880 -12.14931 -12.08057 -11.97436 -11.90001 -11.70585 -11.37891 -11.36317 -11.18390 -10.99013 -10.44768 -9.59767 -9.07037 -7.98851 -5.28358 1.45331 1.47088 1.54844 1.64720 2.00573 2.53662 3.31588 3.44491 3.56425 3.66646 3.83466 3.88790 4.02645 4.15730 4.21856 4.29690 4.37233 4.43172 4.44213 4.52012 4.59577 4.67050 4.75822 4.81661 4.85060 4.88850 4.89558 4.95917 5.05384 5.08593 5.09295 5.15169 5.17309 5.22121 5.27097 5.30358 5.35982 5.41125 5.48636 5.53061 5.59181 5.63904 6.23100 6.63097 7.19788 7.30353 8.02016 8.26454 9.23837 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025984 B = 0.004128 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.342873 B = 6780.893178 C = 7394.772118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.071 4.071 3 C -0.144 4.144 4 C -0.065 4.065 5 C -0.150 4.150 6 C -0.153 4.153 7 C 0.523 3.477 8 O -0.587 6.587 9 N -0.610 5.610 10 C 0.100 3.900 11 C -0.105 4.105 12 H 0.077 0.923 13 C -0.128 4.128 14 C 0.173 3.827 15 H 0.059 0.941 16 N -0.720 5.720 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.066 4.066 20 N -0.964 5.964 21 Si 0.968 3.032 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.270 1.270 25 C 0.092 3.908 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.378 0.622 45 H 0.252 0.748 46 H 0.039 0.961 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 23.658 -2.479 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.090 4.090 3 C -0.201 4.201 4 C -0.068 4.068 5 C -0.206 4.206 6 C -0.210 4.210 7 C 0.314 3.686 8 O -0.468 6.468 9 N -0.343 5.343 10 C -0.022 4.022 11 C -0.125 4.125 12 H 0.095 0.905 13 C -0.186 4.186 14 C 0.062 3.938 15 H 0.077 0.923 16 N -0.359 5.359 17 C -0.378 4.378 18 H 0.089 0.911 19 C -0.259 4.259 20 N -0.614 5.614 21 Si 0.797 3.203 22 H -0.219 1.219 23 H -0.218 1.218 24 H -0.194 1.194 25 C -0.035 4.035 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.210 0.790 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.029 23.441 -2.964 24.157 hybrid contribution -0.835 -1.847 -0.360 2.059 sum 4.194 21.594 -3.324 22.247 Atomic orbital electron populations 1.22060 0.95872 1.01926 1.01690 1.20878 0.95705 0.97012 0.95376 1.21972 1.01858 0.93423 1.02804 1.20786 0.98304 0.88753 0.98994 1.22164 1.00984 1.02171 0.95320 1.22203 0.91095 1.04405 1.03284 1.21258 0.79349 0.88340 0.79695 1.90604 1.40965 1.78265 1.36950 1.48544 1.45718 1.14278 1.25762 1.22762 0.94128 0.98249 0.87042 1.22471 0.97131 0.95906 0.96971 0.90488 1.21631 1.03037 1.01182 0.92715 1.21563 0.97077 0.84453 0.90676 0.92270 1.42373 1.05596 1.03335 1.84630 1.19558 0.87638 0.90735 1.39880 0.91073 1.25483 0.99334 0.97972 1.03146 1.69794 1.23293 1.10873 1.57423 0.85227 0.79484 0.78468 0.77109 1.21880 1.21804 1.19443 1.22927 0.97438 0.82715 1.00391 0.93654 0.92001 0.92544 0.93099 0.90921 0.92224 0.90862 0.90202 0.88355 0.93455 0.93824 0.88353 0.89815 0.88618 0.87906 0.91873 0.93903 0.89590 0.78967 0.93869 0.94233 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 8.53 71.98 0.61 -3.18 16 2 C -0.07 -1.48 1.92 -10.80 -0.02 -1.50 16 3 C -0.14 -1.88 8.53 71.98 0.61 -1.26 16 4 C -0.07 -1.36 0.30 -52.93 -0.02 -1.38 16 5 C -0.15 -2.37 7.46 71.98 0.54 -1.83 16 6 C -0.15 -2.41 7.90 71.98 0.57 -1.84 16 7 C 0.52 16.59 6.25 87.66 0.55 17.14 16 8 O -0.59 -24.01 13.95 -3.04 -0.04 -24.05 16 9 N -0.61 -19.06 3.31 -811.79 -2.69 -21.75 16 10 C 0.10 2.25 4.80 86.73 0.42 2.66 16 11 C -0.11 -2.96 3.19 -9.52 -0.03 -2.99 16 12 H 0.08 2.31 8.00 -2.39 -0.02 2.29 16 13 C -0.13 -3.00 9.14 71.98 0.66 -2.34 16 14 C 0.17 6.69 3.14 46.47 0.15 6.84 16 15 H 0.06 2.34 8.03 -2.39 -0.02 2.32 16 16 N -0.72 -35.57 5.28 -315.97 -1.67 -37.24 16 17 C -0.25 -13.65 9.98 84.03 0.84 -12.81 16 18 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 19 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 20 N -0.96 -58.25 13.06 21.65 0.28 -57.97 16 21 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 C 0.09 3.67 6.58 86.86 0.57 4.24 16 26 H 0.04 1.45 5.51 -2.39 -0.01 1.44 16 27 H 0.06 1.28 6.63 -2.39 -0.02 1.26 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 30 H 0.07 0.75 6.23 -2.38 -0.01 0.74 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.77 6.25 -2.39 -0.01 0.75 16 33 H 0.08 1.08 4.84 -2.38 -0.01 1.06 16 34 H 0.10 1.03 6.01 -2.39 -0.01 1.02 16 35 H 0.05 0.91 6.90 -2.39 -0.02 0.89 16 36 H 0.04 0.83 8.11 -2.39 -0.02 0.81 16 37 H 0.10 1.03 5.97 -2.39 -0.01 1.01 16 38 H 0.08 1.09 4.75 -2.39 -0.01 1.08 16 39 H 0.10 1.73 5.81 -2.38 -0.01 1.71 16 40 H 0.10 1.77 4.96 -2.39 -0.01 1.75 16 41 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 42 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 44 H 0.38 19.81 7.72 -92.71 -0.72 19.09 16 45 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 46 H 0.04 1.76 8.09 -2.38 -0.02 1.75 16 47 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -70.51 346.58 4.07 -66.44 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.25 Total: 27.72 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 5.91 Total: -1.58 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -4.07 Total: -116.95 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.04 Total: -24.05 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -70.51 4.07 -66.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054698526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.918 kcal (2) G-P(sol) polarization free energy of solvation -70.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds