Wall clock time and date at job start Tue Mar 31 2020 06:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47105 * 2 1 4 4 C 1.50700 * 109.47321 * 119.99944 * 2 1 3 5 5 O 1.21286 * 119.99999 * 112.85163 * 4 2 1 6 6 N 1.34777 * 119.99852 * 292.86001 * 4 2 1 7 7 C 1.47419 * 125.65085 * 355.22345 * 6 4 2 8 8 C 1.54907 * 104.83521 * 204.09574 * 7 6 4 9 9 H 1.08997 * 111.00254 * 81.06428 * 8 7 6 10 10 C 1.53004 * 111.00481 * 204.91952 * 8 7 6 11 11 C 1.55163 * 101.57815 * 322.98971 * 8 7 6 12 12 H 1.09003 * 110.87010 * 277.06740 * 11 8 7 13 13 N 1.46501 * 110.71386 * 153.86646 * 11 8 7 14 14 C 1.36942 * 119.99747 * 160.02613 * 13 11 8 15 15 H 1.08002 * 119.99797 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00285 * 179.97438 * 14 13 11 17 17 N 1.31623 * 119.99415 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99994 * 180.27228 * 16 14 13 19 19 H 1.48506 * 109.46971 * 179.72213 * 18 16 14 20 20 H 1.48493 * 109.47500 * 299.72553 * 18 16 14 21 21 H 1.48498 * 109.47226 * 59.73025 * 18 16 14 22 22 C 1.47027 * 125.64779 * 175.18477 * 6 4 2 23 23 C 1.53001 * 109.47533 * 240.00087 * 2 1 3 24 24 C 1.52998 * 109.47066 * 300.00091 * 23 2 1 25 25 C 1.53002 * 109.47114 * 59.99864 * 23 2 1 26 26 C 1.52996 * 109.47533 * 179.97438 * 23 2 1 27 27 H 1.09003 * 109.46930 * 62.02659 * 1 2 3 28 28 H 1.09003 * 109.47116 * 182.02149 * 1 2 3 29 29 H 1.08998 * 109.47442 * 302.02910 * 1 2 3 30 30 H 1.09007 * 110.36603 * 322.93678 * 7 6 4 31 31 H 1.09002 * 110.36700 * 85.14123 * 7 6 4 32 32 H 1.08994 * 109.46980 * 172.19699 * 10 8 7 33 33 H 1.08999 * 109.46504 * 292.19105 * 10 8 7 34 34 H 1.08998 * 109.47324 * 52.19219 * 10 8 7 35 35 H 0.96997 * 120.00226 * 340.01848 * 13 11 8 36 36 H 0.97001 * 119.99236 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.88236 * 59.55256 * 22 6 4 38 38 H 1.09005 * 110.00734 * 298.46870 * 22 6 4 39 39 H 1.09000 * 109.47233 * 60.00120 * 24 23 2 40 40 H 1.09002 * 109.47416 * 179.97438 * 24 23 2 41 41 H 1.08998 * 109.47384 * 299.99613 * 24 23 2 42 42 H 1.09004 * 109.47094 * 60.00349 * 25 23 2 43 43 H 1.08999 * 109.47324 * 179.97438 * 25 23 2 44 44 H 1.09007 * 109.47231 * 300.00354 * 25 23 2 45 45 H 1.08998 * 109.47378 * 59.99904 * 26 23 2 46 46 H 1.08999 * 109.47440 * 180.02562 * 26 23 2 47 47 H 1.09004 * 109.47105 * 299.99913 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6191 -1.7665 1.1239 6 7 1.8295 -0.1722 2.4493 7 6 1.2236 1.1448 2.7170 8 6 1.7636 1.5541 4.1100 9 1 2.7671 1.9725 4.0325 10 6 0.8141 2.5360 4.7995 11 6 1.7853 0.1898 4.8488 12 1 0.8010 -0.0498 5.2509 13 7 2.7915 0.1931 5.9136 14 6 2.7117 -0.7169 6.9338 15 1 1.9067 -1.4367 6.9536 16 6 3.6653 -0.7143 7.9425 17 7 4.6465 0.1627 7.9180 18 14 3.5606 -1.9605 9.3300 19 1 4.6927 -1.7526 10.2684 20 1 2.2772 -1.7862 10.0562 21 1 3.6291 -3.3335 8.7684 22 6 2.1751 -0.8016 3.7323 23 6 2.0401 -0.7212 -1.2492 24 6 1.5301 -2.1637 -1.2493 25 6 1.5301 0.0000 -2.4985 26 6 3.5700 -0.7207 -1.2495 27 1 -0.3633 0.4821 -0.9076 28 1 -0.3633 -1.0271 0.0363 29 1 -0.3634 0.5450 0.8712 30 1 1.5357 1.8665 1.9621 31 1 0.1367 1.0651 2.7380 32 1 1.1430 2.6995 5.8257 33 1 0.8181 3.4838 4.2613 34 1 -0.1951 2.1241 4.8026 35 1 3.5143 0.8397 5.8959 36 1 5.3127 0.1648 8.6231 37 1 3.2460 -1.0011 3.7708 38 1 1.6204 -1.7322 3.8525 39 1 0.4401 -2.1637 -1.2494 40 1 1.8931 -2.6774 -2.1395 41 1 1.8934 -2.6776 -0.3593 42 1 1.8934 1.0277 -2.4985 43 1 1.8938 -0.5135 -3.3885 44 1 0.4400 0.0000 -2.4985 45 1 3.9338 -1.2342 -0.3596 46 1 3.9334 -1.2341 -2.1397 47 1 3.9330 0.3072 -1.2498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082594253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:25 Heat of formation + Delta-G solvation = -37.412495 kcal Electronic energy + Delta-G solvation = -23686.128735 eV Core-core repulsion = 20482.672293 eV Total energy + Delta-G solvation = -3203.456443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.44469 -38.31356 -36.38889 -34.19409 -32.51088 -31.18963 -30.58548 -27.82167 -27.26435 -27.05033 -26.18884 -24.57018 -23.60482 -21.51496 -20.15312 -19.45036 -18.23744 -17.10096 -16.86687 -15.87614 -15.49518 -15.01570 -14.52887 -14.31646 -14.11827 -13.69074 -13.53458 -13.43250 -13.17083 -12.83606 -12.65858 -12.40838 -12.28258 -12.10823 -11.88916 -11.80897 -11.68284 -11.37115 -11.19413 -11.08694 -11.03249 -10.92668 -10.73461 -10.63042 -10.53328 -10.48653 -10.26016 -9.95805 -9.73365 -9.16947 -8.94880 -8.24297 -7.06919 -5.82928 -3.13448 2.88643 3.27350 3.42282 3.47097 3.47707 4.50446 4.54209 4.61927 4.74932 4.82887 5.05473 5.12448 5.20383 5.23862 5.29242 5.41072 5.51170 5.57320 5.58865 5.63403 5.66684 5.70941 5.75635 5.84876 5.85374 5.89746 5.91543 5.93701 5.97209 6.11277 6.15729 6.17019 6.24860 6.28178 6.41808 6.50357 6.52681 6.57730 6.64927 6.76632 6.92015 7.65337 7.88329 8.34555 8.49218 9.46591 10.00259 10.35084 11.39076 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024752 B = 0.004001 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.956769 B = 6997.375021 C = 7576.450969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.528 3.472 5 O -0.536 6.536 6 N -0.612 5.612 7 C 0.106 3.894 8 C -0.114 4.114 9 H 0.084 0.916 10 C -0.134 4.134 11 C 0.177 3.823 12 H 0.064 0.936 13 N -0.711 5.711 14 C -0.248 4.248 15 H 0.071 0.929 16 C -0.008 4.008 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.291 1.291 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.082 3.918 23 C -0.046 4.046 24 C -0.159 4.159 25 C -0.143 4.143 26 C -0.151 4.151 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.050 0.950 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.358 4.309 -17.900 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 H 0.107 0.893 4 C 0.317 3.683 5 O -0.414 6.414 6 N -0.345 5.345 7 C -0.017 4.017 8 C -0.134 4.134 9 H 0.102 0.898 10 C -0.191 4.191 11 C 0.065 3.935 12 H 0.082 0.918 13 N -0.351 5.351 14 C -0.379 4.379 15 H 0.089 0.911 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.044 4.044 23 C -0.047 4.047 24 C -0.216 4.216 25 C -0.200 4.200 26 C -0.208 4.208 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.221 0.779 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.069 0.931 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.044 3.578 -17.855 20.332 hybrid contribution 0.288 -0.414 0.737 0.893 sum -8.756 3.164 -17.118 19.486 Atomic orbital electron populations 1.21901 0.93206 1.02911 1.02542 1.21317 0.97355 1.00242 0.92986 0.89259 1.20263 0.79243 0.85475 0.83338 1.90552 1.41978 1.23422 1.85481 1.48586 1.60642 1.19274 1.06029 1.22412 0.97459 0.84394 0.97445 1.22617 1.00124 0.97249 0.93371 0.89790 1.21618 0.98513 0.97631 1.01375 1.21262 0.94028 0.90558 0.87677 0.91764 1.42335 1.29506 1.39862 1.23423 1.19199 1.08688 1.09680 1.00302 0.91069 1.24751 0.97426 0.99110 0.99150 1.69653 1.15533 1.37548 1.35040 0.86262 0.76942 0.81037 0.81904 1.21650 1.21168 1.21131 1.23206 1.01474 0.97643 0.82031 1.20270 0.95999 0.95823 0.92600 1.22250 1.00042 0.95516 1.03752 1.21960 1.00979 0.99991 0.97059 1.22039 0.94299 1.01259 1.03219 0.91372 0.91858 0.91965 0.91314 0.91468 0.91297 0.93211 0.92846 0.77907 0.93327 0.90998 0.92617 0.93452 0.93558 0.88927 0.92860 0.92619 0.92424 0.90275 0.93074 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.36 37.16 0.31 -1.11 16 2 C -0.10 -1.13 1.47 -91.77 -0.14 -1.26 16 3 H 0.09 0.94 7.44 -51.93 -0.39 0.55 16 4 C 0.53 8.24 6.50 -10.99 -0.07 8.16 16 5 O -0.54 -10.06 11.75 5.55 0.07 -10.00 16 6 N -0.61 -9.61 3.33 -170.52 -0.57 -10.18 16 7 C 0.11 1.34 5.10 -2.53 -0.01 1.33 16 8 C -0.11 -1.69 3.25 -88.47 -0.29 -1.98 16 9 H 0.08 1.35 8.00 -51.93 -0.42 0.93 16 10 C -0.13 -1.74 9.31 37.16 0.35 -1.39 16 11 C 0.18 3.34 3.06 -66.10 -0.20 3.14 16 12 H 0.06 1.22 8.02 -51.93 -0.42 0.80 16 13 N -0.71 -17.09 5.18 -51.65 -0.27 -17.36 16 14 C -0.25 -6.68 9.98 -15.06 -0.15 -6.83 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 17 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 18 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.08 1.56 6.62 -3.07 -0.02 1.54 16 23 C -0.05 -0.52 0.54 -154.51 -0.08 -0.61 16 24 C -0.16 -1.93 7.82 37.16 0.29 -1.64 16 25 C -0.14 -1.25 8.12 37.16 0.30 -0.95 16 26 C -0.15 -1.86 8.18 37.16 0.30 -1.56 16 27 H 0.07 0.52 6.32 -51.93 -0.33 0.20 16 28 H 0.06 0.66 6.54 -51.93 -0.34 0.32 16 29 H 0.06 0.57 6.01 -51.93 -0.31 0.25 16 30 H 0.07 0.73 7.30 -51.92 -0.38 0.35 16 31 H 0.07 0.74 7.00 -51.93 -0.36 0.38 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.39 9.91 7.71 -40.82 -0.31 9.59 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.52 6.48 -51.93 -0.34 0.18 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 1.41 5.26 -51.93 -0.27 1.13 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.45 6.38 -51.92 -0.33 0.12 16 45 H 0.08 1.21 5.78 -51.93 -0.30 0.91 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 353.64 15.07 5.33 5.33 Total: -1.00 -30.11 353.64 -7.51 -37.61 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -8.26 Total: 7.77 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 0.49 Total: -3.47 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.11 Total: -54.35 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.11 -7.51 -37.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082594253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.199 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds