Wall clock time and date at job start Tue Mar 31 2020 06:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47446 * 2 1 4 4 C 1.50706 * 109.47169 * 239.99732 * 2 1 3 5 5 O 1.21278 * 120.00321 * 320.87312 * 4 2 1 6 6 N 1.34781 * 119.99781 * 140.87306 * 4 2 1 7 7 C 1.47419 * 125.64697 * 174.59677 * 6 4 2 8 8 C 1.54914 * 104.83388 * 204.09417 * 7 6 4 9 9 H 1.08992 * 111.00593 * 81.09871 * 8 7 6 10 10 C 1.52995 * 111.00612 * 204.91855 * 8 7 6 11 11 C 1.55160 * 101.57766 * 322.99098 * 8 7 6 12 12 H 1.09002 * 110.72088 * 277.13709 * 11 8 7 13 13 N 1.46500 * 110.71835 * 153.86338 * 11 8 7 14 14 C 1.36938 * 119.99904 * 154.99477 * 13 11 8 15 15 H 1.08000 * 120.00060 * 0.02562 * 14 13 11 16 16 C 1.38807 * 119.99913 * 180.02562 * 14 13 11 17 17 N 1.31621 * 120.00344 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99882 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47532 * 60.00349 * 18 16 14 20 20 H 1.48506 * 109.46902 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47210 * 299.99669 * 18 16 14 22 22 C 1.47021 * 125.64563 * 354.29063 * 6 4 2 23 23 C 1.53008 * 109.47163 * 120.00090 * 2 1 3 24 24 C 1.52998 * 109.47163 * 179.97438 * 23 2 1 25 25 C 1.53001 * 109.46449 * 299.99895 * 23 2 1 26 26 C 1.52997 * 109.46928 * 59.99744 * 23 2 1 27 27 H 1.09008 * 109.46775 * 179.76458 * 1 2 3 28 28 H 1.08993 * 109.47455 * 299.76538 * 1 2 3 29 29 H 1.08995 * 109.47132 * 59.76933 * 1 2 3 30 30 H 1.09002 * 110.37025 * 322.92933 * 7 6 4 31 31 H 1.09001 * 110.36883 * 85.14418 * 7 6 4 32 32 H 1.09001 * 109.47205 * 58.53874 * 10 8 7 33 33 H 1.08998 * 109.47329 * 178.54028 * 10 8 7 34 34 H 1.09007 * 109.47056 * 298.54872 * 10 8 7 35 35 H 0.96997 * 120.00268 * 335.00236 * 13 11 8 36 36 H 0.96996 * 120.00128 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.88479 * 298.39136 * 22 6 4 38 38 H 1.09000 * 109.88722 * 59.56361 * 22 6 4 39 39 H 1.09004 * 109.47007 * 59.99606 * 24 23 2 40 40 H 1.09000 * 109.47190 * 179.97438 * 24 23 2 41 41 H 1.08997 * 109.47145 * 299.99858 * 24 23 2 42 42 H 1.09000 * 109.47333 * 60.00629 * 25 23 2 43 43 H 1.09004 * 109.46663 * 179.97438 * 25 23 2 44 44 H 1.08996 * 109.47688 * 299.99611 * 25 23 2 45 45 H 1.08996 * 109.47150 * 60.00860 * 26 23 2 46 46 H 1.08999 * 109.46782 * 179.97438 * 26 23 2 47 47 H 1.08994 * 109.47484 * 300.00247 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 1.4664 -1.7061 -1.6294 6 7 3.1107 -0.2394 -1.8876 7 6 3.7734 -0.8928 -3.0308 8 6 5.2234 -0.3479 -3.0132 9 1 5.8334 -0.8838 -2.2861 10 6 5.8513 -0.4146 -4.4068 11 6 4.9979 1.1232 -2.5747 12 1 4.7255 1.7429 -3.4290 13 7 6.1892 1.6534 -1.9068 14 6 6.4252 3.0022 -1.8967 15 1 5.7329 3.6752 -2.3806 16 6 7.5542 3.5045 -1.2643 17 7 8.3982 2.6843 -0.6750 18 14 7.8758 5.3446 -1.2498 19 1 6.7489 6.0388 -0.5765 20 1 9.1371 5.6208 -0.5163 21 1 7.9975 5.8369 -2.6456 22 6 3.8170 1.0145 -1.5869 23 6 2.0400 -0.7213 1.2493 24 6 3.5700 -0.7219 1.2490 25 6 1.5300 0.0001 2.4984 26 6 1.5300 -2.1637 1.2493 27 1 -0.3633 -1.0277 -0.0042 28 1 -0.3634 0.5101 0.8920 29 1 -0.3633 0.5174 -0.8879 30 1 3.7733 -1.9752 -2.9014 31 1 3.2762 -0.6229 -3.9625 32 1 5.2467 0.1634 -5.1058 33 1 6.8596 -0.0021 -4.3712 34 1 5.8947 -1.4527 -4.7365 35 1 6.8108 1.0490 -1.4720 36 1 9.1873 3.0353 -0.2334 37 1 3.1425 1.8606 -1.7180 38 1 4.1927 0.9923 -0.5640 39 1 3.9337 0.3057 1.2487 40 1 3.9333 -1.2353 2.1392 41 1 3.9330 -1.2359 0.3590 42 1 0.4400 0.0000 2.4985 43 1 1.8929 -0.5140 3.3885 44 1 1.8933 1.0277 2.4985 45 1 1.8934 -2.6776 0.3594 46 1 1.8937 -2.6777 2.1390 47 1 0.4400 -2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082594254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:28 Heat of formation + Delta-G solvation = -44.672469 kcal Electronic energy + Delta-G solvation = -24085.222697 eV Core-core repulsion = 20881.451439 eV Total energy + Delta-G solvation = -3203.771259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.38161 -38.13438 -36.62184 -34.06670 -32.47460 -30.97616 -30.68909 -27.67189 -27.51555 -27.22350 -26.15200 -24.20302 -23.59860 -21.51540 -19.99093 -19.75448 -17.79854 -17.17643 -16.88834 -16.16353 -15.25937 -15.12522 -14.54822 -14.18349 -13.82663 -13.76692 -13.53267 -13.14705 -13.01619 -12.74026 -12.68428 -12.33325 -12.23146 -12.05288 -11.98925 -11.79500 -11.69494 -11.37166 -11.22298 -11.15095 -11.01692 -10.87602 -10.77860 -10.61115 -10.47615 -10.31745 -10.27897 -10.00422 -9.77428 -9.38545 -9.00079 -8.24673 -7.11387 -5.87277 -3.18021 2.88904 3.30626 3.37836 3.43294 3.43600 4.49228 4.61448 4.71787 4.80014 4.96794 5.15878 5.19761 5.23612 5.35067 5.42557 5.43755 5.55981 5.64259 5.67508 5.75674 5.77156 5.77310 5.83986 5.87876 5.91757 5.93005 5.98258 6.00653 6.02801 6.13284 6.17701 6.20949 6.25862 6.32874 6.39285 6.44593 6.48504 6.54941 6.58662 6.66473 6.87347 7.60382 7.87876 8.29983 8.46496 9.42170 9.96019 10.31123 11.34485 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.005219 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.391369 B = 5363.990427 C = 6317.760182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.536 3.464 5 O -0.553 6.553 6 N -0.612 5.612 7 C 0.113 3.887 8 C -0.114 4.114 9 H 0.082 0.918 10 C -0.132 4.132 11 C 0.177 3.823 12 H 0.067 0.933 13 N -0.710 5.710 14 C -0.249 4.249 15 H 0.071 0.929 16 C -0.007 4.007 17 N -0.929 5.929 18 Si 0.907 3.093 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.068 3.932 23 C -0.053 4.053 24 C -0.148 4.148 25 C -0.141 4.141 26 C -0.145 4.145 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.050 0.950 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.000 -6.598 1.398 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.107 0.893 4 C 0.325 3.675 5 O -0.432 6.432 6 N -0.345 5.345 7 C -0.010 4.010 8 C -0.134 4.134 9 H 0.100 0.900 10 C -0.190 4.190 11 C 0.065 3.935 12 H 0.085 0.915 13 N -0.349 5.349 14 C -0.380 4.380 15 H 0.089 0.911 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.737 3.263 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.058 4.058 23 C -0.054 4.054 24 C -0.205 4.205 25 C -0.198 4.198 26 C -0.202 4.202 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.221 0.779 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.307 -6.939 1.218 14.181 hybrid contribution 0.502 1.004 0.240 1.148 sum -11.805 -5.935 1.457 13.293 Atomic orbital electron populations 1.21776 0.93046 1.03082 1.01695 1.21351 0.97502 1.00418 0.92769 0.89344 1.20239 0.78790 0.84417 0.84069 1.90625 1.57229 1.26989 1.68379 1.48586 1.29162 1.24089 1.32675 1.22222 0.92235 0.97567 0.88931 1.22644 0.94274 0.98028 0.98462 0.89961 1.21594 1.01673 1.00722 0.95010 1.21241 0.87207 0.91892 0.93152 0.91519 1.42332 1.22707 1.05323 1.64575 1.19197 1.05564 0.83396 1.29804 0.91083 1.24742 0.97377 0.97727 1.00479 1.69645 1.14046 1.33439 1.40516 0.86290 0.77268 0.85160 0.77566 1.21180 1.21659 1.21170 1.23426 0.95526 0.84051 1.02798 1.20398 0.95984 0.95723 0.93270 1.22016 0.93773 1.02716 1.02002 1.21918 1.00986 1.00393 0.96515 1.21984 1.01150 0.95055 1.02030 0.91209 0.91706 0.92818 0.91261 0.91906 0.92857 0.91452 0.93280 0.77882 0.93296 0.92540 0.90366 0.91714 0.92535 0.92404 0.92333 0.92446 0.92340 0.91637 0.93101 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.20 37.16 0.30 -1.33 16 2 C -0.10 -1.32 1.87 -91.77 -0.17 -1.50 16 3 H 0.09 1.18 6.90 -51.93 -0.36 0.83 16 4 C 0.54 8.58 5.12 -10.98 -0.06 8.53 16 5 O -0.55 -10.17 15.01 5.56 0.08 -10.08 16 6 N -0.61 -9.72 2.95 -170.51 -0.50 -10.22 16 7 C 0.11 1.71 6.35 -2.53 -0.02 1.69 16 8 C -0.11 -1.78 3.27 -88.47 -0.29 -2.07 16 9 H 0.08 1.37 8.01 -51.93 -0.42 0.95 16 10 C -0.13 -1.87 9.30 37.16 0.35 -1.52 16 11 C 0.18 3.24 3.07 -66.09 -0.20 3.03 16 12 H 0.07 1.24 7.96 -51.93 -0.41 0.82 16 13 N -0.71 -16.23 5.15 -51.64 -0.27 -16.50 16 14 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 15 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 16 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 17 N -0.93 -26.61 13.06 55.49 0.72 -25.88 16 18 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 C 0.07 1.14 5.58 -3.06 -0.02 1.12 16 23 C -0.05 -0.66 0.57 -154.51 -0.09 -0.75 16 24 C -0.15 -2.03 7.39 37.16 0.27 -1.76 16 25 C -0.14 -1.48 8.12 37.16 0.30 -1.17 16 26 C -0.15 -1.81 7.67 37.16 0.29 -1.52 16 27 H 0.07 0.87 6.16 -51.92 -0.32 0.55 16 28 H 0.06 0.63 6.42 -51.93 -0.33 0.30 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 31 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 32 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.39 9.54 7.76 -40.82 -0.32 9.22 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 38 H 0.08 1.40 5.82 -51.93 -0.30 1.10 16 39 H 0.06 0.95 6.85 -51.93 -0.36 0.59 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.88 6.93 -51.93 -0.36 0.52 16 42 H 0.06 0.55 6.42 -51.93 -0.33 0.21 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.97 6.30 -51.93 -0.33 0.64 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -28.54 356.39 -7.54 -36.08 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -8.35 Total: 8.98 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 0.42 Total: -4.07 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.04 Total: -52.60 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.54 -7.54 -36.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082594254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.592 kcal (2) G-P(sol) polarization free energy of solvation -28.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds