Wall clock time and date at job start Tue Mar 31 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.46979 * 2 1 4 4 O 1.21282 * 120.00058 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99997 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.62980 * 180.02562 * 5 3 2 7 7 C 1.53187 * 108.77688 * 126.41364 * 6 5 3 8 8 C 1.53046 * 109.31043 * 54.63722 * 7 6 5 9 9 C 1.53001 * 109.46008 * 178.63085 * 8 7 6 10 10 C 1.53000 * 109.46981 * 300.02190 * 9 8 7 11 11 C 1.52997 * 109.47440 * 60.02370 * 9 8 7 12 12 C 1.53000 * 109.47072 * 180.02562 * 9 8 7 13 13 N 1.46499 * 109.47170 * 179.97438 * 12 9 8 14 14 C 1.36932 * 120.00350 * 179.97438 * 13 12 9 15 15 H 1.08005 * 119.99868 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00619 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99828 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00512 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47357 * 89.99384 * 18 16 14 20 20 H 1.48494 * 109.47219 * 209.99807 * 18 16 14 21 21 H 1.48503 * 109.46989 * 329.99705 * 18 16 14 22 22 C 1.53043 * 109.53475 * 298.63386 * 8 7 6 23 23 C 1.46921 * 120.63225 * 0.02846 * 5 3 2 24 24 H 1.08999 * 109.47434 * 59.99802 * 1 2 3 25 25 H 1.09003 * 109.47344 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47190 * 299.99769 * 1 2 3 27 27 H 1.08997 * 109.47190 * 240.00231 * 2 1 3 28 28 H 1.08999 * 109.47434 * 120.00198 * 2 1 3 29 29 H 1.09003 * 109.59222 * 6.62634 * 6 5 3 30 30 H 1.09006 * 109.70276 * 246.27263 * 6 5 3 31 31 H 1.08996 * 109.50293 * 294.68191 * 7 6 5 32 32 H 1.09001 * 109.50064 * 174.58451 * 7 6 5 33 33 H 1.09002 * 109.46068 * 58.65418 * 8 7 6 34 34 H 1.09005 * 109.47243 * 60.00407 * 10 9 8 35 35 H 1.09000 * 109.47231 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.47199 * 300.00391 * 10 9 8 37 37 H 1.08995 * 109.47302 * 60.00023 * 11 9 8 38 38 H 1.09000 * 109.47089 * 180.02562 * 11 9 8 39 39 H 1.09005 * 109.47083 * 300.00337 * 11 9 8 40 40 H 1.09008 * 109.46946 * 299.99481 * 12 9 8 41 41 H 1.08992 * 109.47337 * 59.99460 * 12 9 8 42 42 H 0.97007 * 120.00299 * 359.97438 * 13 12 9 43 43 H 0.96993 * 120.00331 * 180.02562 * 17 16 14 44 44 H 1.09004 * 109.49679 * 181.31796 * 22 8 7 45 45 H 1.08994 * 109.49744 * 301.41312 * 22 8 7 46 46 H 1.09002 * 109.58756 * 353.36576 * 23 5 3 47 47 H 1.09002 * 109.59282 * 113.79441 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8622 3.0469 0.0011 7 6 4.8398 3.2138 1.1686 8 6 5.9311 2.1451 1.0717 9 6 6.9286 2.3299 2.2170 10 6 7.5638 3.7185 2.1211 11 6 6.1996 2.1938 3.5552 12 6 8.0201 1.2621 2.1199 13 7 8.9755 1.4393 3.2162 14 6 10.0457 0.5933 3.3353 15 1 10.1851 -0.2049 2.6213 16 6 10.9507 0.7608 4.3744 17 7 10.7806 1.7333 5.2449 18 14 12.4109 -0.3928 4.5365 19 1 13.5622 0.1559 3.7757 20 1 12.7813 -0.5244 5.9684 21 1 12.0500 -1.7273 3.9939 22 6 5.2968 0.7557 1.1675 23 6 4.3244 0.5610 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.0299 3.7407 0.1195 30 1 4.3766 3.2504 -0.9382 31 1 4.3037 3.1017 2.1110 32 1 5.2947 4.2033 1.1238 33 1 6.4507 2.2422 0.1183 34 1 6.7862 4.4793 2.1903 35 1 8.2747 3.8500 2.9368 36 1 8.0831 3.8155 1.1677 37 1 5.7472 1.2045 3.6235 38 1 6.9102 2.3258 4.3711 39 1 5.4220 2.9545 3.6244 40 1 7.5676 0.2727 2.1882 41 1 8.5394 1.3590 1.1665 42 1 8.8502 2.1560 3.8578 43 1 11.4131 1.8507 5.9707 44 1 6.0768 -0.0043 1.1219 45 1 4.7563 0.6668 2.1099 46 1 3.7969 -0.3855 0.1186 47 1 4.8772 0.5589 -0.9390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101496797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:04 Heat of formation + Delta-G solvation = -46.355364 kcal Electronic energy + Delta-G solvation = -23416.995207 eV Core-core repulsion = 20213.150972 eV Total energy + Delta-G solvation = -3203.844235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.50156 -38.80651 -36.19088 -33.80511 -33.14396 -31.41917 -31.18045 -29.83830 -26.88964 -25.95554 -25.70346 -24.23238 -22.87565 -22.45995 -20.83252 -19.03737 -18.10864 -17.45523 -16.96910 -15.98982 -15.90085 -14.80548 -14.67599 -14.37005 -14.23605 -14.07153 -13.80414 -13.54088 -13.36689 -12.89135 -12.73226 -12.62215 -12.54643 -12.16473 -11.93625 -11.74865 -11.65293 -11.49303 -11.39019 -11.14598 -10.95982 -10.86751 -10.76335 -10.66551 -10.20209 -10.15381 -10.05586 -9.83854 -9.64629 -9.51540 -8.84503 -8.72243 -6.87197 -5.75050 -3.02321 2.50760 2.87600 3.43600 3.48720 3.50385 4.32757 4.58969 4.63556 4.79191 4.81837 4.85202 4.87401 5.03263 5.15363 5.21496 5.36742 5.37493 5.49295 5.52468 5.56493 5.61078 5.64675 5.68492 5.69726 5.82495 5.92908 5.97385 5.99066 6.04941 6.09629 6.14068 6.22477 6.35400 6.38866 6.42043 6.45419 6.61781 6.73572 6.77662 6.97386 6.99675 7.27963 7.71004 8.05496 8.44855 9.55769 10.15963 10.50145 11.48109 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031217 B = 0.003407 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.737058 B = 8216.254268 C = 8670.304905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.512 3.488 4 O -0.549 6.549 5 N -0.610 5.610 6 C 0.111 3.889 7 C -0.131 4.131 8 C -0.071 4.071 9 C -0.065 4.065 10 C -0.137 4.137 11 C -0.138 4.138 12 C 0.163 3.837 13 N -0.729 5.729 14 C -0.236 4.236 15 H 0.068 0.932 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.905 3.095 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.283 1.283 22 C -0.136 4.136 23 C 0.106 3.894 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.788 -1.431 -11.415 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.301 3.699 4 O -0.427 6.427 5 N -0.344 5.344 6 C -0.012 4.012 7 C -0.169 4.169 8 C -0.090 4.090 9 C -0.065 4.065 10 C -0.195 4.195 11 C -0.195 4.195 12 C 0.035 3.965 13 N -0.375 5.375 14 C -0.368 4.368 15 H 0.086 0.914 16 C -0.211 4.211 17 N -0.584 5.584 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.174 4.174 23 C -0.017 4.017 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.090 -1.078 -11.439 20.593 hybrid contribution 1.090 -0.472 0.373 1.245 sum -16.000 -1.550 -11.066 19.516 Atomic orbital electron populations 1.21530 0.93141 1.01477 1.03262 1.21665 0.98476 0.94101 1.04229 1.20781 0.81713 0.91843 0.75571 1.90673 1.54906 1.46687 1.50396 1.48191 1.05541 1.07648 1.73016 1.21627 0.98036 0.82868 0.98643 1.22087 0.96459 0.99926 0.98462 1.21089 0.95048 0.93847 0.99048 1.20688 0.94870 0.96542 0.94421 1.21849 1.00059 0.95207 1.02357 1.21886 0.99746 1.00577 0.97293 1.20725 0.89359 0.94590 0.91798 1.42435 1.27076 1.37357 1.30583 1.19231 1.00969 1.07998 1.08578 0.91361 1.24715 0.99419 0.98919 0.98040 1.69651 1.38239 1.33205 1.17259 0.86210 0.83010 0.80288 0.76815 1.21822 1.21846 1.20837 1.22124 0.98634 0.98476 0.98144 1.21841 0.91043 0.89237 0.99569 0.92117 0.92141 0.92016 0.89033 0.88826 0.89354 0.91748 0.91188 0.90360 0.91209 0.93525 0.91541 0.93216 0.93030 0.91665 0.93660 0.96283 0.96751 0.78049 0.93581 0.89696 0.91039 0.89841 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.16 0.34 -0.78 16 2 C -0.14 -1.17 4.77 -27.89 -0.13 -1.30 16 3 C 0.51 5.99 7.70 -10.98 -0.08 5.91 16 4 O -0.55 -8.41 15.40 5.56 0.09 -8.33 16 5 N -0.61 -6.50 2.97 -172.80 -0.51 -7.01 16 6 C 0.11 1.20 6.43 -3.71 -0.02 1.18 16 7 C -0.13 -1.46 4.65 -26.61 -0.12 -1.59 16 8 C -0.07 -0.86 1.51 -90.57 -0.14 -0.99 16 9 C -0.06 -0.99 0.33 -154.51 -0.05 -1.04 16 10 C -0.14 -2.14 7.95 37.16 0.30 -1.84 16 11 C -0.14 -2.15 7.60 37.16 0.28 -1.87 16 12 C 0.16 3.14 4.80 -4.04 -0.02 3.12 16 13 N -0.73 -17.99 5.00 -59.91 -0.30 -18.29 16 14 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 15 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 16 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 18 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 C -0.14 -1.47 4.65 -26.63 -0.12 -1.60 16 23 C 0.11 0.93 6.34 -3.74 -0.02 0.91 16 24 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 27 H 0.09 0.57 7.94 -51.93 -0.41 0.16 16 28 H 0.09 0.64 7.69 -51.93 -0.40 0.25 16 29 H 0.09 1.07 7.01 -51.93 -0.36 0.70 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.85 6.51 -51.93 -0.34 0.51 16 32 H 0.08 0.84 6.36 -51.93 -0.33 0.51 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.62 6.40 -51.93 -0.33 0.29 16 35 H 0.07 1.23 6.86 -51.93 -0.36 0.87 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.78 6.46 -51.93 -0.34 0.45 16 38 H 0.06 1.21 6.86 -51.93 -0.36 0.85 16 39 H 0.04 0.63 6.46 -51.93 -0.34 0.29 16 40 H 0.02 0.37 6.40 -51.92 -0.33 0.04 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.38 9.96 5.36 -40.82 -0.22 9.74 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.08 0.97 6.36 -51.93 -0.33 0.64 16 45 H 0.07 0.83 6.51 -51.93 -0.34 0.49 16 46 H 0.08 0.57 5.93 -51.93 -0.31 0.26 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -31.98 349.01 -7.82 -39.81 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.01 Total: 5.76 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -0.05 Total: -7.13 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.09 Total: -52.68 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.98 -7.82 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101496797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.547 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds