Wall clock time and date at job start Tue Mar 31 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.46979 * 2 1 4 4 O 1.21282 * 120.00058 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99997 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.62980 * 180.02562 * 5 3 2 7 7 C 1.53187 * 108.77688 * 126.41364 * 6 5 3 8 8 C 1.53046 * 109.31043 * 54.63722 * 7 6 5 9 9 C 1.53001 * 109.46008 * 178.63085 * 8 7 6 10 10 C 1.53000 * 109.46981 * 300.02190 * 9 8 7 11 11 C 1.52997 * 109.47440 * 60.02370 * 9 8 7 12 12 C 1.53000 * 109.47072 * 180.02562 * 9 8 7 13 13 N 1.46499 * 109.47170 * 179.97438 * 12 9 8 14 14 C 1.36932 * 120.00350 * 179.97438 * 13 12 9 15 15 H 1.08005 * 119.99868 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00619 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99828 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00512 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47357 * 89.99384 * 18 16 14 20 20 H 1.48494 * 109.47219 * 209.99807 * 18 16 14 21 21 H 1.48503 * 109.46989 * 329.99705 * 18 16 14 22 22 C 1.53043 * 109.53475 * 298.63386 * 8 7 6 23 23 C 1.46921 * 120.63225 * 0.02846 * 5 3 2 24 24 H 1.08999 * 109.47434 * 59.99802 * 1 2 3 25 25 H 1.09003 * 109.47344 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47190 * 299.99769 * 1 2 3 27 27 H 1.08997 * 109.47190 * 240.00231 * 2 1 3 28 28 H 1.08999 * 109.47434 * 120.00198 * 2 1 3 29 29 H 1.09003 * 109.59222 * 6.62634 * 6 5 3 30 30 H 1.09006 * 109.70276 * 246.27263 * 6 5 3 31 31 H 1.08996 * 109.50293 * 294.68191 * 7 6 5 32 32 H 1.09001 * 109.50064 * 174.58451 * 7 6 5 33 33 H 1.09002 * 109.46068 * 58.65418 * 8 7 6 34 34 H 1.09005 * 109.47243 * 60.00407 * 10 9 8 35 35 H 1.09000 * 109.47231 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.47199 * 300.00391 * 10 9 8 37 37 H 1.08995 * 109.47302 * 60.00023 * 11 9 8 38 38 H 1.09000 * 109.47089 * 180.02562 * 11 9 8 39 39 H 1.09005 * 109.47083 * 300.00337 * 11 9 8 40 40 H 1.09008 * 109.46946 * 299.99481 * 12 9 8 41 41 H 1.08992 * 109.47337 * 59.99460 * 12 9 8 42 42 H 0.97007 * 120.00299 * 359.97438 * 13 12 9 43 43 H 0.96993 * 120.00331 * 180.02562 * 17 16 14 44 44 H 1.09004 * 109.49679 * 181.31796 * 22 8 7 45 45 H 1.08994 * 109.49744 * 301.41312 * 22 8 7 46 46 H 1.09002 * 109.58756 * 353.36576 * 23 5 3 47 47 H 1.09002 * 109.59282 * 113.79441 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8622 3.0469 0.0011 7 6 4.8398 3.2138 1.1686 8 6 5.9311 2.1451 1.0717 9 6 6.9286 2.3299 2.2170 10 6 7.5638 3.7185 2.1211 11 6 6.1996 2.1938 3.5552 12 6 8.0201 1.2621 2.1199 13 7 8.9755 1.4393 3.2162 14 6 10.0457 0.5933 3.3353 15 1 10.1851 -0.2049 2.6213 16 6 10.9507 0.7608 4.3744 17 7 10.7806 1.7333 5.2449 18 14 12.4109 -0.3928 4.5365 19 1 13.5622 0.1559 3.7757 20 1 12.7813 -0.5244 5.9684 21 1 12.0500 -1.7273 3.9939 22 6 5.2968 0.7557 1.1675 23 6 4.3244 0.5610 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.0299 3.7407 0.1195 30 1 4.3766 3.2504 -0.9382 31 1 4.3037 3.1017 2.1110 32 1 5.2947 4.2033 1.1238 33 1 6.4507 2.2422 0.1183 34 1 6.7862 4.4793 2.1903 35 1 8.2747 3.8500 2.9368 36 1 8.0831 3.8155 1.1677 37 1 5.7472 1.2045 3.6235 38 1 6.9102 2.3258 4.3711 39 1 5.4220 2.9545 3.6244 40 1 7.5676 0.2727 2.1882 41 1 8.5394 1.3590 1.1665 42 1 8.8502 2.1560 3.8578 43 1 11.4131 1.8507 5.9707 44 1 6.0768 -0.0043 1.1219 45 1 4.7563 0.6668 2.1099 46 1 3.7969 -0.3855 0.1186 47 1 4.8772 0.5589 -0.9390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101496797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:04 Heat of formation + Delta-G solvation = -65.615872 kcal Electronic energy + Delta-G solvation = -23417.830405 eV Core-core repulsion = 20213.150972 eV Total energy + Delta-G solvation = -3204.679433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41644 -39.91354 -37.37256 -35.48989 -33.95645 -32.90315 -32.03468 -31.36387 -28.17201 -27.49550 -26.72029 -25.42352 -24.10386 -23.61943 -21.86089 -19.96845 -19.46274 -18.98459 -18.07848 -16.87211 -16.71611 -16.60485 -16.07626 -15.46159 -15.31617 -15.20437 -15.06373 -14.77087 -14.48088 -14.20056 -14.10094 -13.66921 -13.40617 -13.14511 -13.05375 -12.97482 -12.79439 -12.73019 -12.60723 -12.58311 -12.21486 -12.09989 -12.02176 -11.93726 -11.86643 -11.71692 -11.24116 -11.11844 -10.92627 -10.82455 -10.67890 -9.59611 -8.91338 -7.91738 -5.18417 1.47983 1.49436 1.57746 1.65917 2.09028 2.58446 3.41942 3.58159 3.71012 3.79188 3.86449 4.13590 4.16553 4.25685 4.26696 4.30991 4.31590 4.40432 4.42137 4.49998 4.63230 4.71839 4.84305 4.87946 4.89198 4.93764 4.97242 4.99648 5.02081 5.05907 5.07318 5.13841 5.17780 5.25341 5.27708 5.34118 5.36404 5.44653 5.51693 5.58979 5.68068 5.70841 6.31468 6.46651 7.21006 7.37782 8.18096 8.39762 9.32221 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031217 B = 0.003407 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.737058 B = 8216.254268 C = 8670.304905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 C 0.503 3.497 4 O -0.594 6.594 5 N -0.610 5.610 6 C 0.111 3.889 7 C -0.123 4.123 8 C -0.063 4.063 9 C -0.056 4.056 10 C -0.134 4.134 11 C -0.131 4.131 12 C 0.161 3.839 13 N -0.742 5.742 14 C -0.239 4.239 15 H 0.075 0.925 16 C -0.078 4.078 17 N -0.972 5.972 18 Si 0.971 3.029 19 H -0.289 1.289 20 H -0.298 1.298 21 H -0.268 1.268 22 C -0.134 4.134 23 C 0.109 3.891 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.029 0.971 39 H 0.063 0.937 40 H 0.026 0.974 41 H 0.014 0.986 42 H 0.375 0.625 43 H 0.249 0.751 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.110 0.890 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.387 -3.070 -13.121 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.294 3.706 4 O -0.475 6.475 5 N -0.342 5.342 6 C -0.011 4.011 7 C -0.161 4.161 8 C -0.082 4.082 9 C -0.056 4.056 10 C -0.191 4.191 11 C -0.188 4.188 12 C 0.035 3.965 13 N -0.385 5.385 14 C -0.371 4.371 15 H 0.093 0.907 16 C -0.270 4.270 17 N -0.623 5.623 18 Si 0.800 3.200 19 H -0.216 1.216 20 H -0.225 1.225 21 H -0.193 1.193 22 C -0.172 4.172 23 C -0.013 4.013 24 H 0.066 0.934 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.136 0.864 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.032 0.968 42 H 0.208 0.792 43 H 0.058 0.942 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.128 0.872 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.691 -2.751 -13.187 22.236 hybrid contribution 1.240 0.055 0.864 1.513 sum -16.451 -2.696 -12.323 20.730 Atomic orbital electron populations 1.21531 0.93550 1.02550 1.01750 1.21741 0.98111 0.91870 1.06259 1.21487 0.81608 0.92937 0.74570 1.90655 1.56021 1.48334 1.52537 1.48308 1.05722 1.07965 1.72252 1.21575 0.97382 0.83137 0.99016 1.21991 0.96028 0.99859 0.98185 1.21007 0.94427 0.95144 0.97625 1.20600 0.94380 0.94961 0.95680 1.21803 1.00029 0.96249 1.00999 1.21810 0.99283 1.01488 0.96244 1.20912 0.89443 0.96313 0.89835 1.42662 1.27508 1.36614 1.31723 1.19657 1.01413 1.07972 1.08089 0.90719 1.25523 1.02428 1.00809 0.98261 1.69817 1.39272 1.35209 1.18001 0.85171 0.79642 0.78934 0.76229 1.21639 1.22465 1.19306 1.22082 0.98902 0.97334 0.98904 1.21964 0.90518 0.89644 0.99185 0.93406 0.89685 0.93834 0.86383 0.87034 0.90879 0.90346 0.92209 0.89807 0.90390 0.91133 0.95133 0.92855 0.92598 0.95228 0.91820 0.95599 0.96815 0.79188 0.94192 0.90000 0.91769 0.87216 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.20 71.98 0.66 -1.34 16 2 C -0.14 -1.85 4.77 29.85 0.14 -1.71 16 3 C 0.50 10.86 7.70 87.66 0.67 11.54 16 4 O -0.59 -18.02 15.40 -3.03 -0.05 -18.07 16 5 N -0.61 -11.45 2.97 -818.99 -2.43 -13.89 16 6 C 0.11 2.21 6.43 86.36 0.56 2.76 16 7 C -0.12 -2.48 4.65 30.67 0.14 -2.34 16 8 C -0.06 -1.37 1.51 -10.76 -0.02 -1.39 16 9 C -0.06 -1.65 0.33 -52.18 -0.02 -1.66 16 10 C -0.13 -4.08 7.95 71.98 0.57 -3.51 16 11 C -0.13 -4.05 7.60 71.98 0.55 -3.50 16 12 C 0.16 6.09 4.80 86.38 0.41 6.50 16 13 N -0.74 -36.97 5.00 -343.46 -1.72 -38.69 16 14 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 15 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 16 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 17 N -0.97 -59.75 13.06 21.65 0.28 -59.47 16 18 Si 0.97 46.08 29.55 68.60 2.03 48.10 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C -0.13 -2.54 4.65 30.66 0.14 -2.40 16 23 C 0.11 1.51 6.34 86.35 0.55 2.06 16 24 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.04 0.78 8.10 -2.39 -0.02 0.77 16 27 H 0.12 0.96 7.94 -2.39 -0.02 0.94 16 28 H 0.11 1.11 7.69 -2.39 -0.02 1.09 16 29 H 0.07 1.71 7.01 -2.39 -0.02 1.69 16 30 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.06 1.35 6.51 -2.39 -0.02 1.33 16 32 H 0.08 1.61 6.36 -2.39 -0.02 1.59 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.79 6.40 -2.38 -0.02 1.77 16 35 H 0.03 1.14 6.86 -2.39 -0.02 1.13 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.65 6.46 -2.39 -0.02 1.64 16 38 H 0.03 1.11 6.86 -2.39 -0.02 1.10 16 39 H 0.06 1.71 6.46 -2.38 -0.02 1.69 16 40 H 0.03 0.96 6.40 -2.38 -0.02 0.95 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.37 20.05 5.36 -92.70 -0.50 19.56 16 43 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.08 1.63 6.36 -2.39 -0.02 1.62 16 45 H 0.06 1.33 6.51 -2.39 -0.02 1.31 16 46 H 0.11 0.99 5.93 -2.39 -0.01 0.98 16 47 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -70.55 349.01 4.24 -66.31 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.45 Total: 27.12 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 5.67 Total: -11.42 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -3.87 Total: -112.04 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.05 Total: -18.07 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -70.55 4.24 -66.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101496797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.699 kcal (2) G-P(sol) polarization free energy of solvation -70.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds