Wall clock time and date at job start Tue Mar 31 2020 06:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46620 * 2 1 4 4 C 1.53001 * 109.46881 * 119.99450 * 2 1 3 5 5 C 1.53001 * 109.46767 * 174.99987 * 4 2 1 6 6 C 1.50698 * 109.47315 * 180.02562 * 5 4 2 7 7 O 1.21290 * 119.99931 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00327 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00205 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47193 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.88507 * 51.12460 * 10 9 8 12 12 C 1.54909 * 111.00568 * 287.19968 * 10 9 8 13 13 N 1.47427 * 104.83076 * 204.91577 * 12 10 9 14 14 C 1.36936 * 125.64488 * 204.08294 * 13 12 10 15 15 H 1.07998 * 120.00378 * 354.84487 * 14 13 12 16 16 C 1.38817 * 119.99611 * 174.84070 * 14 13 12 17 17 N 1.31616 * 120.00028 * 7.05800 * 16 14 13 18 18 Si 1.86801 * 119.99963 * 187.05401 * 16 14 13 19 19 H 1.48498 * 109.47176 * 94.98790 * 18 16 14 20 20 H 1.48501 * 109.47365 * 214.99020 * 18 16 14 21 21 H 1.48504 * 109.46910 * 334.98688 * 18 16 14 22 22 C 1.47020 * 108.70470 * 24.12743 * 13 12 10 23 23 C 1.54326 * 107.27297 * 358.94306 * 22 13 12 24 24 H 1.08999 * 110.71862 * 96.16231 * 23 22 13 25 25 C 1.52994 * 110.87179 * 219.37170 * 23 22 13 26 26 H 1.09000 * 109.47015 * 299.99554 * 1 2 3 27 27 H 1.08994 * 109.47201 * 60.00494 * 1 2 3 28 28 H 1.09006 * 109.46996 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47077 * 239.99683 * 2 1 3 30 30 H 1.09007 * 109.46787 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46930 * 299.99672 * 3 2 1 32 32 H 1.09000 * 109.47062 * 60.00475 * 3 2 1 33 33 H 1.08999 * 109.47103 * 55.00668 * 4 2 1 34 34 H 1.08997 * 109.47868 * 295.00238 * 4 2 1 35 35 H 1.09002 * 109.47243 * 60.00467 * 5 4 2 36 36 H 1.09006 * 109.47552 * 300.00246 * 5 4 2 37 37 H 0.96996 * 120.00196 * 0.02562 * 8 6 5 38 38 H 1.08999 * 109.46896 * 60.00862 * 9 8 6 39 39 H 1.08997 * 109.47649 * 300.00694 * 9 8 6 40 40 H 1.08997 * 110.36757 * 323.75570 * 12 10 9 41 41 H 1.09002 * 110.36544 * 86.08070 * 12 10 9 42 42 H 0.97003 * 119.99567 * 179.97438 * 17 16 14 43 43 H 1.08994 * 109.88331 * 239.52041 * 22 13 12 44 44 H 1.09001 * 109.88242 * 118.35341 * 22 13 12 45 45 H 1.09010 * 109.47058 * 173.60530 * 25 23 22 46 46 H 1.08993 * 109.47319 * 293.60337 * 25 23 22 47 47 H 1.08996 * 109.47409 * 53.61081 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8309 1.1880 6 6 4.0671 -1.5418 2.4182 7 8 3.2827 -1.9235 3.2609 8 7 5.3879 -1.7543 2.5816 9 6 5.8763 -2.4448 3.7778 10 6 7.4011 -2.5547 3.7165 11 1 7.8528 -1.5838 3.5132 12 6 7.8404 -3.6036 2.6646 13 7 9.1726 -4.0505 3.1107 14 6 10.1416 -4.5939 2.3101 15 1 9.9298 -4.8026 1.2718 16 6 11.3960 -4.8764 2.8331 17 7 11.6132 -4.7534 4.1253 18 14 12.7759 -5.4311 1.7027 19 1 13.5951 -4.2570 1.3085 20 1 13.6314 -6.4159 2.4123 21 1 12.1979 -6.0616 0.4887 22 6 9.2881 -3.8170 4.5576 23 6 7.9675 -3.1687 5.0241 24 1 7.2878 -3.9220 5.4223 25 6 8.2331 -2.0781 6.0636 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6054 -1.7197 1.2953 34 1 1.7516 -0.1582 2.1371 35 1 3.9994 0.1676 1.1421 36 1 3.8532 -1.3939 0.3003 37 1 6.0153 -1.4494 1.9076 38 1 5.4414 -3.4432 3.8240 39 1 5.5884 -1.8817 4.6655 40 1 7.1439 -4.4419 2.6510 41 1 7.9046 -3.1466 1.6771 42 1 12.4897 -4.9512 4.4908 43 1 10.1224 -3.1453 4.7593 44 1 9.4388 -4.7645 5.0751 45 1 7.3018 -1.5598 6.2925 46 1 8.6297 -2.5309 6.9722 47 1 8.9568 -1.3662 5.6666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101708628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:51 Heat of formation + Delta-G solvation = -49.535726 kcal Electronic energy + Delta-G solvation = -22407.360341 eV Core-core repulsion = 19203.378196 eV Total energy + Delta-G solvation = -3203.982145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.77845 -38.06788 -36.76061 -34.60350 -32.94139 -31.29451 -30.73552 -29.14246 -27.44174 -26.08030 -25.38248 -24.18254 -22.57557 -20.56773 -20.12457 -19.95445 -19.15126 -17.11248 -16.63033 -16.01249 -15.95455 -15.01802 -14.90223 -14.40449 -14.22114 -13.84092 -13.74013 -13.55576 -13.10490 -12.87438 -12.70307 -12.52478 -12.48009 -12.00989 -11.81857 -11.68123 -11.51794 -11.36521 -11.22659 -11.03975 -10.88252 -10.81373 -10.79118 -10.76902 -10.17581 -10.00014 -9.97663 -9.90517 -9.65060 -9.50669 -8.90668 -8.58662 -6.83344 -5.73218 -3.05522 2.72232 3.29186 3.38930 3.44133 3.46316 4.48389 4.54665 4.57885 4.64617 4.90532 5.04592 5.12185 5.19460 5.23588 5.33565 5.35351 5.40083 5.47988 5.52634 5.56336 5.57050 5.65124 5.77216 5.79119 5.82404 5.88747 5.95429 6.03589 6.10439 6.13284 6.18727 6.19429 6.29606 6.48374 6.50568 6.57734 6.63007 6.77215 6.94976 7.55961 7.60539 7.64795 7.83114 8.25346 8.31247 9.21097 9.81740 10.48518 11.38785 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.003002 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.814730 B = 9324.461201 C =10126.526654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.098 4.098 5 C -0.143 4.143 6 C 0.508 3.492 7 O -0.548 6.548 8 N -0.726 5.726 9 C 0.132 3.868 10 C -0.112 4.112 11 H 0.080 0.920 12 C 0.142 3.858 13 N -0.607 5.607 14 C -0.230 4.230 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.919 5.919 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.183 3.817 23 C -0.111 4.111 24 H 0.067 0.933 25 C -0.134 4.134 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.401 0.599 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.018 0.982 41 H 0.036 0.964 42 H 0.252 0.748 43 H 0.050 0.950 44 H 0.039 0.961 45 H 0.044 0.956 46 H 0.053 0.947 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.693 11.222 -5.294 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.208 4.208 4 C -0.136 4.136 5 C -0.183 4.183 6 C 0.295 3.705 7 O -0.426 6.426 8 N -0.378 5.378 9 C 0.008 3.992 10 C -0.132 4.132 11 H 0.098 0.902 12 C 0.016 3.984 13 N -0.333 5.333 14 C -0.358 4.358 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.567 5.567 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.058 3.942 23 C -0.131 4.131 24 H 0.085 0.915 25 C -0.191 4.191 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.235 0.765 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.036 0.964 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.018 10.847 -4.652 20.710 hybrid contribution 1.217 -0.221 -0.870 1.512 sum -15.801 10.625 -5.522 19.826 Atomic orbital electron populations 1.21826 0.95170 1.01811 1.01635 1.21160 0.95873 0.96362 0.98367 1.21919 1.01174 0.96013 1.01694 1.21394 0.92939 1.01499 0.97805 1.21761 0.98124 1.01725 0.96718 1.20735 0.82213 0.79429 0.88141 1.90689 1.55423 1.51651 1.44836 1.46134 1.07461 1.59750 1.24422 1.21379 0.93919 0.97005 0.86873 1.22669 0.92234 1.00029 0.98269 0.90201 1.21583 0.88356 0.93542 0.94942 1.44476 1.11378 1.72825 1.04609 1.19052 0.89989 1.34274 0.92461 0.90490 1.24824 0.97621 1.01821 0.96121 1.69980 1.21949 1.54770 1.09957 0.86129 0.82337 0.77867 0.79629 1.21639 1.21773 1.20652 1.21229 0.90991 0.98168 0.83818 1.22434 0.99875 0.97167 0.93578 0.91476 1.21687 1.00417 0.98280 0.98763 0.92661 0.92820 0.92638 0.91158 0.92428 0.92855 0.92654 0.91212 0.91245 0.88869 0.88950 0.76464 0.91531 0.91794 0.96428 0.94594 0.93756 0.93154 0.94248 0.93678 0.92774 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.19 37.16 0.34 -0.68 16 2 C -0.10 -0.73 2.92 -90.62 -0.26 -0.99 16 3 C -0.15 -1.00 8.95 37.16 0.33 -0.67 16 4 C -0.10 -0.91 3.97 -26.73 -0.11 -1.02 16 5 C -0.14 -1.29 5.45 -27.88 -0.15 -1.45 16 6 C 0.51 6.61 7.83 -10.99 -0.09 6.52 16 7 O -0.55 -9.28 15.98 5.55 0.09 -9.19 16 8 N -0.73 -9.10 5.50 -60.29 -0.33 -9.43 16 9 C 0.13 1.93 5.13 -4.04 -0.02 1.91 16 10 C -0.11 -1.85 2.49 -88.47 -0.22 -2.07 16 11 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 12 C 0.14 2.84 6.65 -2.53 -0.02 2.82 16 13 N -0.61 -15.33 3.39 -170.07 -0.58 -15.91 16 14 C -0.23 -6.36 10.27 -15.06 -0.15 -6.52 16 15 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 16 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 17 N -0.92 -26.93 10.36 55.49 0.57 -26.36 16 18 Si 0.91 21.99 29.56 -169.99 -5.02 16.96 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.18 4.37 4.98 -3.06 -0.02 4.36 16 23 C -0.11 -2.01 3.01 -88.78 -0.27 -2.28 16 24 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 25 C -0.13 -2.09 9.17 37.15 0.34 -1.75 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.36 6.56 -51.92 -0.34 0.02 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.09 0.69 6.56 -51.93 -0.34 0.34 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.40 4.21 8.47 -40.82 -0.35 3.87 16 38 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 39 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.05 1.33 6.93 -51.93 -0.36 0.97 16 44 H 0.04 1.06 7.61 -51.93 -0.40 0.66 16 45 H 0.04 0.61 8.08 -51.92 -0.42 0.19 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -31.90 369.58 -8.98 -40.88 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.89 Total: -0.40 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -0.38 Total: -2.13 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.33 Total: -51.70 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.90 -8.98 -40.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101708628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.658 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds