Wall clock time and date at job start Tue Mar 31 2020 06:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46620 * 2 1 4 4 C 1.53001 * 109.46881 * 119.99450 * 2 1 3 5 5 C 1.53001 * 109.46767 * 174.99987 * 4 2 1 6 6 C 1.50698 * 109.47315 * 180.02562 * 5 4 2 7 7 O 1.21290 * 119.99931 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00327 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00205 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47193 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.88507 * 51.12460 * 10 9 8 12 12 C 1.54909 * 111.00568 * 287.19968 * 10 9 8 13 13 N 1.47427 * 104.83076 * 204.91577 * 12 10 9 14 14 C 1.36936 * 125.64488 * 204.08294 * 13 12 10 15 15 H 1.07998 * 120.00378 * 354.84487 * 14 13 12 16 16 C 1.38817 * 119.99611 * 174.84070 * 14 13 12 17 17 N 1.31616 * 120.00028 * 7.05800 * 16 14 13 18 18 Si 1.86801 * 119.99963 * 187.05401 * 16 14 13 19 19 H 1.48498 * 109.47176 * 94.98790 * 18 16 14 20 20 H 1.48501 * 109.47365 * 214.99020 * 18 16 14 21 21 H 1.48504 * 109.46910 * 334.98688 * 18 16 14 22 22 C 1.47020 * 108.70470 * 24.12743 * 13 12 10 23 23 C 1.54326 * 107.27297 * 358.94306 * 22 13 12 24 24 H 1.08999 * 110.71862 * 96.16231 * 23 22 13 25 25 C 1.52994 * 110.87179 * 219.37170 * 23 22 13 26 26 H 1.09000 * 109.47015 * 299.99554 * 1 2 3 27 27 H 1.08994 * 109.47201 * 60.00494 * 1 2 3 28 28 H 1.09006 * 109.46996 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47077 * 239.99683 * 2 1 3 30 30 H 1.09007 * 109.46787 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46930 * 299.99672 * 3 2 1 32 32 H 1.09000 * 109.47062 * 60.00475 * 3 2 1 33 33 H 1.08999 * 109.47103 * 55.00668 * 4 2 1 34 34 H 1.08997 * 109.47868 * 295.00238 * 4 2 1 35 35 H 1.09002 * 109.47243 * 60.00467 * 5 4 2 36 36 H 1.09006 * 109.47552 * 300.00246 * 5 4 2 37 37 H 0.96996 * 120.00196 * 0.02562 * 8 6 5 38 38 H 1.08999 * 109.46896 * 60.00862 * 9 8 6 39 39 H 1.08997 * 109.47649 * 300.00694 * 9 8 6 40 40 H 1.08997 * 110.36757 * 323.75570 * 12 10 9 41 41 H 1.09002 * 110.36544 * 86.08070 * 12 10 9 42 42 H 0.97003 * 119.99567 * 179.97438 * 17 16 14 43 43 H 1.08994 * 109.88331 * 239.52041 * 22 13 12 44 44 H 1.09001 * 109.88242 * 118.35341 * 22 13 12 45 45 H 1.09010 * 109.47058 * 173.60530 * 25 23 22 46 46 H 1.08993 * 109.47319 * 293.60337 * 25 23 22 47 47 H 1.08996 * 109.47409 * 53.61081 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8309 1.1880 6 6 4.0671 -1.5418 2.4182 7 8 3.2827 -1.9235 3.2609 8 7 5.3879 -1.7543 2.5816 9 6 5.8763 -2.4448 3.7778 10 6 7.4011 -2.5547 3.7165 11 1 7.8528 -1.5838 3.5132 12 6 7.8404 -3.6036 2.6646 13 7 9.1726 -4.0505 3.1107 14 6 10.1416 -4.5939 2.3101 15 1 9.9298 -4.8026 1.2718 16 6 11.3960 -4.8764 2.8331 17 7 11.6132 -4.7534 4.1253 18 14 12.7759 -5.4311 1.7027 19 1 13.5951 -4.2570 1.3085 20 1 13.6314 -6.4159 2.4123 21 1 12.1979 -6.0616 0.4887 22 6 9.2881 -3.8170 4.5576 23 6 7.9675 -3.1687 5.0241 24 1 7.2878 -3.9220 5.4223 25 6 8.2331 -2.0781 6.0636 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6054 -1.7197 1.2953 34 1 1.7516 -0.1582 2.1371 35 1 3.9994 0.1676 1.1421 36 1 3.8532 -1.3939 0.3003 37 1 6.0153 -1.4494 1.9076 38 1 5.4414 -3.4432 3.8240 39 1 5.5884 -1.8817 4.6655 40 1 7.1439 -4.4419 2.6510 41 1 7.9046 -3.1466 1.6771 42 1 12.4897 -4.9512 4.4908 43 1 10.1224 -3.1453 4.7593 44 1 9.4388 -4.7645 5.0751 45 1 7.3018 -1.5598 6.2925 46 1 8.6297 -2.5309 6.9722 47 1 8.9568 -1.3662 5.6666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101708628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:50 Heat of formation + Delta-G solvation = -68.900274 kcal Electronic energy + Delta-G solvation = -22408.200051 eV Core-core repulsion = 19203.378196 eV Total energy + Delta-G solvation = -3204.821855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.87086 -39.59774 -37.46025 -35.98749 -34.65047 -32.55485 -32.13899 -30.51448 -27.95491 -27.86768 -26.80432 -25.33475 -24.04139 -21.74708 -21.55835 -20.76746 -20.56529 -18.86076 -17.91622 -17.23721 -16.85059 -16.61586 -15.99319 -15.72068 -15.60517 -14.95306 -14.94156 -14.55440 -14.40062 -14.23764 -13.99998 -13.54699 -13.43889 -13.19720 -13.07933 -13.01901 -12.86428 -12.68317 -12.59865 -12.40580 -12.17887 -11.93040 -11.85341 -11.64631 -11.56652 -11.47935 -11.41463 -11.39192 -11.36429 -10.74993 -10.68197 -10.02409 -8.89087 -7.85771 -5.20269 1.46007 1.47586 1.56540 1.71882 2.28441 2.49497 3.32003 3.62223 3.71162 3.86605 3.92487 3.95254 3.96065 4.03314 4.24911 4.37309 4.42459 4.49628 4.59934 4.60798 4.71516 4.74826 4.82401 4.84791 4.86494 4.91310 4.97721 5.00010 5.08525 5.10827 5.16307 5.19240 5.23745 5.34382 5.36161 5.40823 5.48585 5.51258 5.55055 5.58489 5.70737 5.81697 6.20410 6.62755 7.10430 7.32163 7.78327 8.43498 9.25073 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.003002 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.814730 B = 9324.461201 C =10126.526654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.096 4.096 5 C -0.135 4.135 6 C 0.506 3.494 7 O -0.591 6.591 8 N -0.720 5.720 9 C 0.144 3.856 10 C -0.089 4.089 11 H 0.090 0.910 12 C 0.138 3.862 13 N -0.630 5.630 14 C -0.243 4.243 15 H 0.083 0.917 16 C -0.067 4.067 17 N -0.950 5.950 18 Si 0.977 3.023 19 H -0.285 1.285 20 H -0.297 1.297 21 H -0.267 1.267 22 C 0.191 3.809 23 C -0.102 4.102 24 H 0.071 0.929 25 C -0.127 4.127 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.414 0.586 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.015 0.985 41 H 0.051 0.949 42 H 0.246 0.754 43 H 0.019 0.981 44 H -0.004 1.004 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.572 12.772 -6.992 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.134 4.134 5 C -0.175 4.175 6 C 0.294 3.706 7 O -0.472 6.472 8 N -0.371 5.371 9 C 0.020 3.980 10 C -0.108 4.108 11 H 0.109 0.891 12 C 0.013 3.987 13 N -0.356 5.356 14 C -0.371 4.371 15 H 0.101 0.899 16 C -0.260 4.260 17 N -0.599 5.599 18 Si 0.806 3.194 19 H -0.212 1.212 20 H -0.224 1.224 21 H -0.192 1.192 22 C 0.066 3.934 23 C -0.122 4.122 24 H 0.090 0.910 25 C -0.184 4.184 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.250 0.750 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.037 0.963 44 H 0.014 0.986 45 H 0.093 0.907 46 H 0.072 0.928 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.917 12.418 -6.391 22.717 hybrid contribution 1.444 -0.745 -0.352 1.662 sum -16.473 11.673 -6.743 21.286 Atomic orbital electron populations 1.21844 0.95136 1.01676 1.01954 1.21132 0.95944 0.96737 0.97509 1.21922 1.01631 0.95332 1.01890 1.21351 0.93260 1.00530 0.98257 1.21801 0.97699 1.02720 0.95231 1.21429 0.81709 0.78722 0.88706 1.90677 1.56423 1.53493 1.46622 1.46047 1.07823 1.59249 1.24028 1.21098 0.91966 0.96788 0.88196 1.22460 0.93594 0.99124 0.95669 0.89138 1.21761 0.85897 0.94354 0.96702 1.44815 1.12859 1.72793 1.05117 1.19462 0.90833 1.33787 0.93065 0.89912 1.25680 1.00063 1.02723 0.97518 1.70206 1.21926 1.56135 1.11627 0.85075 0.79091 0.77234 0.78040 1.21229 1.22397 1.19189 1.20991 0.93221 0.95804 0.83411 1.22316 0.96748 0.97975 0.95188 0.91013 1.21630 1.01801 0.97290 0.97705 0.93090 0.91765 0.93043 0.90290 0.91688 0.92053 0.93126 0.92975 0.92760 0.86459 0.86868 0.74982 0.92893 0.91113 0.96751 0.93102 0.94444 0.96294 0.98558 0.90664 0.92783 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.19 71.98 0.66 -1.20 16 2 C -0.09 -1.19 2.92 -10.79 -0.03 -1.22 16 3 C -0.15 -1.61 8.95 71.98 0.64 -0.97 16 4 C -0.10 -1.64 3.97 30.59 0.12 -1.52 16 5 C -0.14 -2.06 5.45 29.85 0.16 -1.90 16 6 C 0.51 12.13 7.83 87.66 0.69 12.81 16 7 O -0.59 -19.48 15.98 -3.06 -0.05 -19.53 16 8 N -0.72 -16.14 5.50 -463.06 -2.55 -18.69 16 9 C 0.14 3.90 5.13 86.38 0.44 4.34 16 10 C -0.09 -2.78 2.49 -9.40 -0.02 -2.80 16 11 H 0.09 2.70 8.05 -2.39 -0.02 2.68 16 12 C 0.14 5.36 6.65 86.85 0.58 5.94 16 13 N -0.63 -32.15 3.39 -691.99 -2.35 -34.50 16 14 C -0.24 -13.55 10.27 84.03 0.86 -12.69 16 15 H 0.08 4.40 7.84 -2.91 -0.02 4.37 16 16 C -0.07 -3.81 5.48 84.86 0.46 -3.35 16 17 N -0.95 -57.52 10.36 21.65 0.22 -57.30 16 18 Si 0.98 45.64 29.56 68.60 2.03 47.67 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 22 C 0.19 9.42 4.98 86.73 0.43 9.85 16 23 C -0.10 -3.66 3.01 -9.60 -0.03 -3.69 16 24 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 25 C -0.13 -3.77 9.17 71.98 0.66 -3.11 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.60 6.56 -2.38 -0.02 0.58 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 34 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 35 H 0.12 1.28 6.56 -2.39 -0.02 1.26 16 36 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.41 7.30 8.47 -92.71 -0.79 6.51 16 38 H 0.05 1.61 7.96 -2.39 -0.02 1.59 16 39 H 0.07 1.88 8.08 -2.39 -0.02 1.86 16 40 H 0.01 0.59 7.91 -2.39 -0.02 0.57 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 42 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.02 1.04 6.93 -2.39 -0.02 1.02 16 44 H 0.00 -0.22 7.61 -2.39 -0.02 -0.24 16 45 H 0.07 1.81 8.08 -2.38 -0.02 1.79 16 46 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.05 1.53 8.07 -2.39 -0.02 1.51 16 Total: -1.00 -71.18 369.58 3.07 -68.11 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.13 Total: 13.72 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 5.63 Total: 0.51 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -4.67 Total: -110.49 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.05 Total: -19.53 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -71.18 3.07 -68.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101708628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.788 kcal (2) G-P(sol) polarization free energy of solvation -71.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds