Wall clock time and date at job start Tue Mar 31 2020 06:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.63836 * 2 1 4 4 C 1.54319 * 110.87132 * 236.74958 * 2 1 3 5 5 N 1.47022 * 107.26928 * 219.37363 * 4 2 1 6 6 C 1.36933 * 125.64936 * 178.89483 * 5 4 2 7 7 H 1.08003 * 120.00355 * 180.02562 * 6 5 4 8 8 C 1.38819 * 119.99783 * 0.02562 * 6 5 4 9 9 N 1.31612 * 119.99960 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99681 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47317 * 60.00147 * 10 8 6 12 12 H 1.48504 * 109.46882 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47141 * 299.99581 * 10 8 6 14 14 C 1.47424 * 108.70440 * 358.93848 * 5 4 2 15 15 C 1.54907 * 104.83157 * 24.12999 * 14 5 4 16 16 H 1.08998 * 111.03752 * 81.08094 * 15 14 5 17 17 C 1.52997 * 111.00593 * 204.91241 * 15 14 5 18 18 N 1.46499 * 109.47555 * 287.20002 * 17 15 14 19 19 C 1.34777 * 120.00199 * 180.02562 * 18 17 15 20 20 O 1.21283 * 119.99750 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99928 * 180.27479 * 19 18 17 22 22 C 1.52996 * 109.47159 * 179.72352 * 21 19 18 23 23 C 1.53006 * 109.47352 * 59.99543 * 22 21 19 24 24 C 1.52994 * 109.47118 * 179.97438 * 22 21 19 25 25 C 1.53002 * 109.46949 * 300.00134 * 22 21 19 26 26 H 1.09006 * 109.47234 * 296.86206 * 1 2 3 27 27 H 1.08999 * 109.47293 * 56.85834 * 1 2 3 28 28 H 1.08998 * 109.47147 * 176.86524 * 1 2 3 29 29 H 1.09005 * 109.88201 * 338.78478 * 4 2 1 30 30 H 1.08997 * 109.88249 * 99.95920 * 4 2 1 31 31 H 0.97003 * 119.99755 * 179.97438 * 9 8 6 32 32 H 1.09003 * 110.36712 * 265.29056 * 14 5 4 33 33 H 1.09005 * 110.36650 * 142.96924 * 14 5 4 34 34 H 1.08998 * 109.47382 * 167.19563 * 17 15 14 35 35 H 1.09002 * 109.47216 * 47.20000 * 17 15 14 36 36 H 0.97000 * 119.99484 * 359.97438 * 18 17 15 37 37 H 1.09004 * 109.46965 * 299.72211 * 21 19 18 38 38 H 1.08994 * 109.46990 * 59.72065 * 21 19 18 39 39 H 1.08996 * 109.46527 * 60.00105 * 23 22 21 40 40 H 1.09001 * 109.46925 * 180.02562 * 23 22 21 41 41 H 1.09003 * 109.47167 * 300.00441 * 23 22 21 42 42 H 1.09003 * 109.47184 * 60.00331 * 24 22 21 43 43 H 1.09001 * 109.47062 * 179.97438 * 24 22 21 44 44 H 1.08998 * 109.46965 * 299.99512 * 24 22 21 45 45 H 1.08994 * 109.47439 * 59.99953 * 25 22 21 46 46 H 1.09001 * 109.47432 * 180.02562 * 25 22 21 47 47 H 1.09008 * 109.46768 * 299.99629 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0798 -0.7906 -1.2059 5 7 3.2494 -1.5470 -0.7352 6 6 4.0115 -2.3931 -1.4958 7 1 4.8541 -2.9048 -1.0546 8 6 3.7010 -2.5931 -2.8339 9 7 2.6739 -1.9699 -3.3715 10 14 4.7411 -3.7468 -3.8717 11 1 4.7011 -5.1109 -3.2864 12 1 4.2055 -3.7857 -5.2562 13 1 6.1438 -3.2602 -3.8977 14 6 3.4652 -1.2446 0.6914 15 6 2.0790 -0.7933 1.2152 16 1 1.4465 -1.6524 1.4389 17 6 2.2236 0.1113 2.4407 18 7 2.6288 -0.6929 3.5962 19 6 2.8176 -0.1044 4.7939 20 8 2.6525 1.0910 4.9149 21 6 3.2405 -0.9308 5.9812 22 6 3.3899 -0.0254 7.2054 23 6 2.0509 0.6513 7.5058 24 6 3.8185 -0.8644 8.4109 25 6 4.4490 1.0423 6.9239 26 1 -0.3634 0.4644 0.9168 27 1 -0.3634 0.5618 -0.8605 28 1 -0.3633 -1.0261 -0.0562 29 1 1.3190 -1.4774 -1.5769 30 1 2.3775 -0.1016 -1.9962 31 1 2.4572 -2.1094 -4.3066 32 1 4.1930 -0.4408 0.8030 33 1 3.7993 -2.1363 1.2219 34 1 1.2692 0.5940 2.6507 35 1 2.9797 0.8714 2.2440 36 1 2.7605 -1.6491 3.4994 37 1 2.4859 -1.6914 6.1817 38 1 4.1943 -1.4128 5.7671 39 1 1.2964 -0.1093 7.7063 40 1 2.1575 1.2966 8.3778 41 1 1.7451 1.2489 6.6471 42 1 4.7724 -1.3467 8.1971 43 1 3.9254 -0.2193 9.2830 44 1 3.0636 -1.6247 8.6112 45 1 4.1432 1.6399 6.0652 46 1 4.5558 1.6871 7.7962 47 1 5.4029 0.5602 6.7099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101724965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:53 Heat of formation + Delta-G solvation = -56.552700 kcal Electronic energy + Delta-G solvation = -22963.048779 eV Core-core repulsion = 19758.762355 eV Total energy + Delta-G solvation = -3204.286424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12855 -39.70569 -37.50985 -35.86485 -34.63850 -32.54399 -31.22872 -29.08469 -28.05150 -27.97221 -27.72709 -26.39326 -24.38242 -21.96864 -21.55197 -20.74780 -19.76339 -18.84349 -17.85423 -17.21358 -16.58152 -16.51323 -15.88643 -15.65724 -15.27694 -15.24412 -15.00296 -14.76039 -14.44207 -14.16215 -13.62758 -13.43569 -13.40126 -13.09780 -12.94997 -12.88890 -12.81627 -12.64605 -12.60651 -12.42353 -12.16070 -11.99425 -11.94662 -11.82418 -11.60123 -11.52832 -11.47847 -11.37220 -11.30415 -10.69602 -10.36106 -9.92682 -8.89019 -7.84056 -5.19774 1.45840 1.49134 1.55346 1.77122 2.32388 2.49966 3.33751 3.63041 3.73538 3.80153 3.93902 3.96413 3.98946 4.00232 4.33083 4.41056 4.51315 4.61032 4.64997 4.70933 4.72791 4.74983 4.84380 4.88026 4.89928 4.91339 4.97716 5.03133 5.09171 5.13424 5.16535 5.22426 5.27776 5.35086 5.41412 5.43381 5.47451 5.53857 5.58680 5.71752 5.75883 5.82399 6.20813 6.67781 7.11072 7.40121 7.79014 8.43726 9.25980 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026117 B = 0.003334 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.853722 B = 8396.868790 C = 9154.606747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.071 0.929 4 C 0.192 3.808 5 N -0.630 5.630 6 C -0.244 4.244 7 H 0.083 0.917 8 C -0.067 4.067 9 N -0.951 5.951 10 Si 0.978 3.022 11 H -0.274 1.274 12 H -0.296 1.296 13 H -0.279 1.279 14 C 0.138 3.862 15 C -0.089 4.089 16 H 0.089 0.911 17 C 0.146 3.854 18 N -0.722 5.722 19 C 0.507 3.493 20 O -0.568 6.568 21 C -0.130 4.130 22 C -0.053 4.053 23 C -0.151 4.151 24 C -0.137 4.137 25 C -0.152 4.152 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.016 0.984 30 H -0.002 1.002 31 H 0.246 0.754 32 H 0.015 0.985 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.411 0.589 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 1.238 21.641 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.090 0.910 4 C 0.067 3.933 5 N -0.356 5.356 6 C -0.373 4.373 7 H 0.101 0.899 8 C -0.260 4.260 9 N -0.600 5.600 10 Si 0.807 3.193 11 H -0.200 1.200 12 H -0.222 1.222 13 H -0.205 1.205 14 C 0.013 3.987 15 C -0.109 4.109 16 H 0.107 0.893 17 C 0.022 3.978 18 N -0.374 5.374 19 C 0.296 3.704 20 O -0.448 6.448 21 C -0.169 4.169 22 C -0.053 4.053 23 C -0.208 4.208 24 C -0.195 4.195 25 C -0.210 4.210 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.016 0.984 31 H 0.055 0.945 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.247 0.753 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.604 2.004 21.510 21.663 hybrid contribution 0.616 -0.779 -1.397 1.714 sum -0.987 1.225 20.114 20.175 Atomic orbital electron populations 1.21630 0.92987 1.01663 1.02125 1.22313 0.96974 0.98495 0.94427 0.91014 1.20969 0.88105 0.91949 0.92254 1.44794 1.32514 1.51350 1.06902 1.19448 1.07903 1.17952 0.92040 0.89885 1.25665 0.99837 1.02273 0.98229 1.70188 1.30365 1.47117 1.12362 0.85155 0.77954 0.78867 0.77374 1.19984 1.22198 1.20485 1.21755 0.95098 0.97437 0.84387 1.22461 0.96887 0.98311 0.93226 0.89281 1.21065 1.00026 0.93032 0.83681 1.46086 1.69818 1.12660 1.08852 1.21243 0.76076 0.88448 0.84648 1.90576 1.52464 1.17021 1.84781 1.21856 1.04770 0.98721 0.91584 1.20291 0.95963 0.94964 0.94083 1.22056 0.96280 1.00660 1.01795 1.21852 1.01742 0.99510 0.96354 1.22070 0.97845 0.98969 1.02078 0.90633 0.92819 0.93246 0.96528 0.98415 0.94473 0.96727 0.93277 0.91080 0.92883 0.75260 0.86805 0.87287 0.92571 0.92999 0.92321 0.91918 0.92353 0.91616 0.92410 0.92924 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.17 71.98 0.66 -3.09 16 2 C -0.10 -3.65 3.01 -9.61 -0.03 -3.67 16 3 H 0.07 2.50 8.04 -2.39 -0.02 2.48 16 4 C 0.19 9.49 4.97 86.73 0.43 9.92 16 5 N -0.63 -32.17 3.39 -691.99 -2.35 -34.52 16 6 C -0.24 -13.69 10.28 84.04 0.86 -12.82 16 7 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 8 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 9 N -0.95 -57.65 10.31 21.65 0.22 -57.43 16 10 Si 0.98 45.72 29.55 68.60 2.03 47.75 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 C 0.14 5.38 6.65 86.85 0.58 5.96 16 15 C -0.09 -2.77 2.49 -9.40 -0.02 -2.80 16 16 H 0.09 2.66 8.05 -2.39 -0.02 2.64 16 17 C 0.15 3.87 5.13 86.38 0.44 4.31 16 18 N -0.72 -15.82 5.50 -463.06 -2.55 -18.37 16 19 C 0.51 11.56 7.24 87.66 0.63 12.19 16 20 O -0.57 -16.89 11.35 -3.04 -0.03 -16.93 16 21 C -0.13 -2.00 4.77 29.85 0.14 -1.86 16 22 C -0.05 -0.88 0.77 -52.18 -0.04 -0.92 16 23 C -0.15 -2.84 8.18 71.98 0.59 -2.26 16 24 C -0.14 -1.66 8.47 71.98 0.61 -1.05 16 25 C -0.15 -3.04 8.18 71.98 0.59 -2.45 16 26 H 0.07 1.80 8.09 -2.38 -0.02 1.78 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 1.51 8.07 -2.39 -0.02 1.49 16 29 H 0.02 0.91 7.02 -2.38 -0.02 0.89 16 30 H 0.00 -0.14 7.51 -2.39 -0.02 -0.15 16 31 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.01 0.60 7.91 -2.39 -0.02 0.58 16 33 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 35 H 0.05 1.58 7.96 -2.39 -0.02 1.56 16 36 H 0.41 7.29 8.47 -92.71 -0.79 6.51 16 37 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 1.45 5.51 -2.39 -0.01 1.44 16 42 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.06 1.50 5.51 -2.39 -0.01 1.49 16 46 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -69.20 362.14 3.37 -65.83 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.13 Total: 15.57 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 5.91 Total: -1.91 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -4.67 Total: -110.32 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.03 Total: -16.93 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -69.20 3.37 -65.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101724965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.281 kcal (2) G-P(sol) polarization free energy of solvation -69.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds