Wall clock time and date at job start Tue Mar 31 2020 06:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46842 * 2 1 4 4 C 1.53002 * 109.46830 * 119.99608 * 2 1 3 5 5 H 1.09006 * 109.47214 * 300.00710 * 4 2 1 6 6 C 1.52989 * 109.47330 * 180.02562 * 4 2 1 7 7 C 1.50708 * 109.46934 * 59.99994 * 4 2 1 8 8 O 1.21278 * 120.00028 * 0.02562 * 7 4 2 9 9 N 1.34779 * 119.99733 * 179.97438 * 7 4 2 10 10 C 1.46495 * 119.99708 * 180.02562 * 9 7 4 11 11 C 1.53002 * 109.46909 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.64216 * 54.29969 * 11 10 9 13 13 C 1.54322 * 110.72081 * 291.15367 * 11 10 9 14 14 N 1.47019 * 107.27173 * 219.44410 * 13 11 10 15 15 C 1.36943 * 125.64823 * 178.97513 * 14 13 11 16 16 H 1.07996 * 119.99622 * 349.94294 * 15 14 13 17 17 C 1.38809 * 120.00061 * 169.94133 * 15 14 13 18 18 N 1.31617 * 119.99982 * 350.42617 * 17 15 14 19 19 Si 1.86801 * 120.00252 * 170.42252 * 17 15 14 20 20 H 1.48497 * 109.47017 * 94.13759 * 19 17 15 21 21 H 1.48494 * 109.47072 * 214.14398 * 19 17 15 22 22 H 1.48504 * 109.46642 * 334.14350 * 19 17 15 23 23 C 1.47426 * 108.70335 * 358.94389 * 14 13 11 24 24 C 1.55115 * 104.94487 * 23.99974 * 23 14 13 25 25 H 1.09004 * 110.93877 * 81.21539 * 24 23 14 26 26 C 1.53001 * 111.16318 * 205.13217 * 24 23 14 27 27 H 1.08998 * 109.48091 * 300.00264 * 1 2 3 28 28 H 1.08997 * 109.46924 * 60.00438 * 1 2 3 29 29 H 1.09001 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47477 * 239.99430 * 2 1 3 31 31 H 1.09001 * 109.46947 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47004 * 299.99513 * 3 2 1 33 33 H 1.09000 * 109.47513 * 59.99852 * 3 2 1 34 34 H 1.09006 * 109.47416 * 300.00420 * 6 4 2 35 35 H 1.09001 * 109.47242 * 60.00237 * 6 4 2 36 36 H 1.09001 * 109.47836 * 180.02562 * 6 4 2 37 37 H 0.97003 * 119.99936 * 0.02562 * 9 7 4 38 38 H 1.08999 * 109.47027 * 299.99289 * 10 9 7 39 39 H 1.08993 * 109.47600 * 60.00020 * 10 9 7 40 40 H 1.08997 * 109.88002 * 338.86065 * 13 11 10 41 41 H 1.09000 * 109.88331 * 100.03020 * 13 11 10 42 42 H 0.97004 * 120.00104 * 179.97438 * 18 17 15 43 43 H 1.09000 * 110.36654 * 142.96946 * 23 14 13 44 44 H 1.09000 * 110.36415 * 265.28624 * 23 14 13 45 45 H 1.08999 * 109.47030 * 172.17167 * 26 24 23 46 46 H 1.08998 * 109.47219 * 292.16763 * 26 24 23 47 47 H 1.08998 * 109.47146 * 52.17387 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2073 2.1393 6 6 3.5698 -0.7207 1.2498 7 6 1.5375 -2.1421 1.2494 8 8 0.8407 -2.5389 0.3395 9 7 1.8635 -2.9720 2.2600 10 6 1.3756 -4.3533 2.2598 11 6 1.8865 -5.0749 3.5085 12 1 1.6191 -4.5213 4.4086 13 6 3.4131 -5.2863 3.4308 14 7 3.6970 -6.6225 3.9742 15 6 4.9350 -7.2010 4.0645 16 1 5.7820 -6.7426 3.5759 17 6 5.1011 -8.3764 4.7839 18 7 4.1199 -8.8341 5.5323 19 14 6.7171 -9.3086 4.6898 20 1 7.5946 -8.8926 5.8132 21 1 6.4532 -10.7671 4.7816 22 1 7.3881 -9.0071 3.3998 23 6 2.4283 -7.2363 4.4066 24 6 1.3335 -6.5233 3.5705 25 1 1.2611 -6.9567 2.5730 26 6 -0.0198 -6.5637 4.2831 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.9336 -1.2343 0.3598 35 1 3.9329 0.3071 1.2500 36 1 3.9332 -1.2349 2.1396 37 1 2.4211 -2.6547 2.9875 38 1 0.2856 -4.3536 2.2600 39 1 1.7389 -4.8669 1.3697 40 1 3.7427 -5.2303 2.3933 41 1 3.9231 -4.5283 4.0254 42 1 4.2359 -9.6557 6.0348 43 1 2.4325 -8.3055 4.1948 44 1 2.2646 -7.0601 5.4697 45 1 -0.7330 -5.9401 3.7441 46 1 -0.3845 -7.5904 4.3125 47 1 0.0940 -6.1893 5.3005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102420643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:16 Heat of formation + Delta-G solvation = -61.339607 kcal Electronic energy + Delta-G solvation = -23052.592825 eV Core-core repulsion = 19848.098825 eV Total energy + Delta-G solvation = -3204.494000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18056 -39.68016 -37.14015 -35.98611 -34.70261 -32.56418 -32.04620 -30.38232 -28.15486 -27.77553 -26.67367 -25.30588 -24.29782 -22.20384 -21.43716 -21.08884 -20.29416 -18.85215 -18.15818 -17.17816 -16.79344 -16.38028 -16.10514 -15.62981 -15.49279 -15.13873 -14.77396 -14.66068 -14.46831 -14.06335 -13.73352 -13.48800 -13.38971 -13.11393 -13.09043 -12.98058 -12.85139 -12.76857 -12.65360 -12.46296 -12.39405 -11.96721 -11.93780 -11.85403 -11.62072 -11.56887 -11.44129 -11.40373 -11.29979 -10.69120 -10.45854 -9.99882 -8.85489 -7.88833 -5.23143 1.45049 1.46683 1.56185 1.70738 2.26406 2.48754 3.29777 3.61117 3.69392 3.75972 3.87001 3.90567 3.95862 4.00076 4.32368 4.38211 4.48483 4.49916 4.59000 4.62560 4.66148 4.73579 4.81394 4.85961 4.86371 4.95404 4.97090 4.98126 5.06983 5.07692 5.13346 5.16793 5.25059 5.35739 5.37132 5.41760 5.44695 5.48643 5.54899 5.65367 5.66763 5.77655 6.20469 6.61622 7.08295 7.32337 7.76683 8.43047 9.22962 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024244 B = 0.003556 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.635354 B = 7871.484206 C = 8765.525332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.076 4.076 3 C -0.144 4.144 4 C -0.101 4.101 5 H 0.118 0.882 6 C -0.146 4.146 7 C 0.511 3.489 8 O -0.577 6.577 9 N -0.719 5.719 10 C 0.145 3.855 11 C -0.088 4.088 12 H 0.094 0.906 13 C 0.139 3.861 14 N -0.628 5.628 15 C -0.246 4.246 16 H 0.077 0.923 17 C -0.063 4.063 18 N -0.946 5.946 19 Si 0.976 3.024 20 H -0.284 1.284 21 H -0.293 1.293 22 H -0.271 1.271 23 C 0.187 3.813 24 C -0.102 4.102 25 H 0.067 0.933 26 C -0.127 4.127 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.411 0.589 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.021 0.979 41 H 0.027 0.973 42 H 0.248 0.752 43 H 0.028 0.972 44 H 0.001 0.999 45 H 0.074 0.926 46 H 0.054 0.946 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.462 19.242 -6.499 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.095 4.095 3 C -0.201 4.201 4 C -0.122 4.122 5 H 0.136 0.864 6 C -0.203 4.203 7 C 0.299 3.701 8 O -0.457 6.457 9 N -0.371 5.371 10 C 0.021 3.979 11 C -0.107 4.107 12 H 0.112 0.888 13 C 0.014 3.986 14 N -0.354 5.354 15 C -0.375 4.375 16 H 0.095 0.905 17 C -0.256 4.256 18 N -0.595 5.595 19 Si 0.804 3.196 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.195 1.195 23 C 0.062 3.938 24 C -0.122 4.122 25 H 0.086 0.914 26 C -0.185 4.185 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.248 0.752 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.039 0.961 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.019 0.981 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.848 18.789 -7.054 21.205 hybrid contribution 1.169 -1.058 0.490 1.651 sum -5.679 17.730 -6.564 19.741 Atomic orbital electron populations 1.22022 0.95423 1.02416 1.01570 1.20886 0.95952 0.96583 0.96063 1.21886 1.01665 0.94026 1.02533 1.21439 0.98204 0.90675 1.01866 0.86433 1.21865 0.91845 1.04191 1.02397 1.21282 0.79207 0.88795 0.80850 1.90617 1.39751 1.78196 1.37185 1.46047 1.53478 1.11809 1.25724 1.21135 0.98905 0.81252 0.96608 1.22309 0.94288 0.96068 0.98062 0.88770 1.21487 0.94307 0.86845 0.95971 1.44784 1.03337 1.14448 1.72809 1.19384 0.86583 1.05559 1.25947 0.90503 1.25640 1.01301 1.00281 0.98412 1.70153 1.33441 1.23310 1.32579 0.85114 0.79059 0.77474 0.77970 1.21116 1.21973 1.19536 1.21268 0.83252 0.95470 0.93836 1.22476 0.95709 0.94563 0.99486 0.91415 1.21601 0.94690 1.02080 1.00111 0.92369 0.92699 0.92660 0.92708 0.91434 0.92289 0.91561 0.93412 0.89021 0.91460 0.75241 0.90862 0.93299 0.96086 0.95523 0.94275 0.95395 0.98063 0.90710 0.92691 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.87 71.98 0.64 -2.44 16 2 C -0.08 -1.35 2.15 -10.79 -0.02 -1.37 16 3 C -0.14 -1.75 8.84 71.98 0.64 -1.11 16 4 C -0.10 -1.72 2.32 -11.54 -0.03 -1.75 16 5 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 6 C -0.15 -2.12 8.74 71.98 0.63 -1.49 16 7 C 0.51 12.61 6.86 87.66 0.60 13.21 16 8 O -0.58 -18.73 13.66 -3.02 -0.04 -18.77 16 9 N -0.72 -16.75 5.32 -463.07 -2.46 -19.22 16 10 C 0.15 4.01 5.00 86.38 0.43 4.44 16 11 C -0.09 -2.75 2.45 -9.60 -0.02 -2.78 16 12 H 0.09 2.68 8.04 -2.39 -0.02 2.66 16 13 C 0.14 5.50 6.64 86.73 0.58 6.07 16 14 N -0.63 -32.27 3.40 -691.59 -2.35 -34.62 16 15 C -0.25 -13.89 10.24 84.03 0.86 -13.03 16 16 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 17 C -0.06 -3.59 5.40 84.86 0.46 -3.13 16 18 N -0.95 -57.01 10.68 21.65 0.23 -56.78 16 19 Si 0.98 45.87 29.56 68.60 2.03 47.90 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 C 0.19 9.11 4.91 86.93 0.43 9.53 16 24 C -0.10 -3.64 3.10 -9.33 -0.03 -3.67 16 25 H 0.07 2.46 8.05 -2.39 -0.02 2.44 16 26 C -0.13 -3.63 9.31 71.98 0.67 -2.96 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 1.43 5.51 -2.39 -0.01 1.42 16 30 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 31 H 0.07 0.70 6.43 -2.39 -0.02 0.69 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.09 0.95 6.43 -2.39 -0.02 0.94 16 36 H 0.07 0.93 7.56 -2.39 -0.02 0.91 16 37 H 0.41 7.82 7.82 -92.71 -0.73 7.09 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 1.56 8.00 -2.39 -0.02 1.54 16 40 H 0.02 0.85 7.73 -2.39 -0.02 0.83 16 41 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.03 1.55 6.94 -2.39 -0.02 1.54 16 44 H 0.00 0.07 7.92 -2.39 -0.02 0.05 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.05 1.56 8.08 -2.39 -0.02 1.54 16 Total: -1.00 -69.88 362.93 3.43 -66.45 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.20 Total: 15.52 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 5.83 Total: -0.48 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -4.58 Total: -110.62 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.04 Total: -18.77 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -69.88 3.43 -66.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102420643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.109 kcal (2) G-P(sol) polarization free energy of solvation -69.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds