Wall clock time and date at job start Tue Mar 31 2020 06:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47441 * 2 1 4 4 C 1.53004 * 109.47000 * 119.99819 * 2 1 3 5 5 H 1.08998 * 109.46846 * 300.00150 * 4 2 1 6 6 C 1.52998 * 109.46876 * 59.99835 * 4 2 1 7 7 C 1.50700 * 109.47208 * 179.97438 * 4 2 1 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 4 2 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 4 2 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 4 11 11 C 1.52999 * 109.46992 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.64142 * 54.29615 * 11 10 9 13 13 C 1.54328 * 110.72179 * 291.15738 * 11 10 9 14 14 N 1.47018 * 107.27230 * 219.44328 * 13 11 10 15 15 C 1.36933 * 125.64821 * 178.97471 * 14 13 11 16 16 H 1.08000 * 120.00233 * 0.02562 * 15 14 13 17 17 C 1.38819 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99585 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00145 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47477 * 89.99930 * 19 17 15 21 21 H 1.48502 * 109.47057 * 210.00171 * 19 17 15 22 22 H 1.48506 * 109.47340 * 329.99620 * 19 17 15 23 23 C 1.47427 * 108.70634 * 358.93988 * 14 13 11 24 24 C 1.55125 * 104.93757 * 24.00182 * 23 14 13 25 25 H 1.09003 * 110.93607 * 81.22313 * 24 23 14 26 26 C 1.53003 * 111.15939 * 205.12936 * 24 23 14 27 27 H 1.09001 * 109.47109 * 300.01087 * 1 2 3 28 28 H 1.09004 * 109.46774 * 59.99875 * 1 2 3 29 29 H 1.08995 * 109.47672 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47443 * 239.99604 * 2 1 3 31 31 H 1.08998 * 109.47156 * 59.99965 * 3 2 1 32 32 H 1.09005 * 109.46870 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46783 * 299.99563 * 3 2 1 34 34 H 1.09004 * 109.47239 * 180.02562 * 6 4 2 35 35 H 1.09005 * 109.47323 * 300.00275 * 6 4 2 36 36 H 1.09006 * 109.47458 * 59.99925 * 6 4 2 37 37 H 0.97000 * 119.99894 * 359.71837 * 9 7 4 38 38 H 1.08995 * 109.47421 * 299.99467 * 10 9 7 39 39 H 1.09001 * 109.47621 * 60.00103 * 10 9 7 40 40 H 1.09005 * 109.88132 * 338.86129 * 13 11 10 41 41 H 1.08997 * 109.88279 * 100.02077 * 13 11 10 42 42 H 0.96996 * 119.99420 * 179.97438 * 18 17 15 43 43 H 1.08999 * 110.36987 * 142.96345 * 23 14 13 44 44 H 1.08995 * 110.36304 * 265.29290 * 23 14 13 45 45 H 1.09001 * 109.47103 * 172.17238 * 26 24 23 46 46 H 1.08998 * 109.47468 * 292.17333 * 26 24 23 47 47 H 1.09001 * 109.46983 * 52.17908 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 1.5299 -2.1637 1.2493 7 6 3.5470 -0.7218 1.2490 8 8 4.1534 -0.1974 0.3390 9 7 4.2207 -1.3104 2.2570 10 6 5.6857 -1.3162 2.2537 11 6 6.1956 -2.0418 3.5004 12 1 5.7587 -3.0379 3.5710 13 6 5.8926 -1.2213 4.7720 14 7 7.0595 -1.3426 5.6581 15 6 7.1976 -0.7444 6.8821 16 1 6.4061 -0.1208 7.2708 17 6 8.3550 -0.9393 7.6233 18 7 9.3195 -1.6996 7.1497 19 14 8.5432 -0.1239 9.2932 20 1 8.0132 -1.0258 10.3471 21 1 9.9798 0.1491 9.5518 22 1 7.7862 1.1537 9.3085 23 6 8.0559 -2.2155 5.0111 24 6 7.7451 -2.1212 3.4942 25 1 8.1809 -1.2200 3.0626 26 6 8.2273 -3.3698 2.7530 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4423 0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.8928 -2.6774 2.1396 35 1 0.4398 -2.1637 1.2492 36 1 1.8932 -2.6776 0.3593 37 1 3.7356 -1.7301 2.9847 38 1 6.0450 -1.8295 1.3618 39 1 6.0532 -0.2900 2.2552 40 1 5.7337 -0.1754 4.5092 41 1 5.0075 -1.6196 5.2679 42 1 10.1283 -1.8355 7.6675 43 1 9.0645 -1.8566 5.2156 44 1 7.9406 -3.2431 5.3558 45 1 7.8748 -3.3392 1.7220 46 1 9.3168 -3.4007 2.7636 47 1 7.8338 -4.2592 3.2452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102420644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:20 Heat of formation + Delta-G solvation = -40.140752 kcal Electronic energy + Delta-G solvation = -23043.671586 eV Core-core repulsion = 19840.096837 eV Total energy + Delta-G solvation = -3203.574749 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.13738 -38.12621 -36.23858 -34.64478 -32.99287 -31.14612 -30.74746 -28.99994 -27.39249 -26.02124 -25.21573 -24.30777 -22.78406 -21.08025 -19.92450 -19.79942 -19.12679 -17.25059 -16.73449 -15.95658 -15.57843 -14.90069 -14.79812 -14.36012 -14.24959 -13.88775 -13.66706 -13.39952 -12.98890 -12.67820 -12.62434 -12.37233 -12.28469 -12.17961 -11.89889 -11.69762 -11.55575 -11.45650 -11.14751 -11.06435 -10.89283 -10.84179 -10.80251 -10.70431 -10.21914 -10.02779 -9.90444 -9.83140 -9.56046 -9.29714 -8.87323 -8.65901 -6.83991 -5.66092 -3.07860 2.72353 3.28918 3.39199 3.44223 3.46261 4.47005 4.47824 4.63995 4.71189 5.03217 5.11154 5.18351 5.26033 5.27093 5.31173 5.35830 5.49469 5.52677 5.57590 5.61264 5.66407 5.71978 5.77449 5.79839 5.87692 5.93899 6.04217 6.07736 6.14104 6.20425 6.24567 6.27046 6.38549 6.51903 6.57226 6.60190 6.63691 6.80667 6.95185 7.52886 7.61427 7.62406 7.85946 8.33200 8.35860 9.21489 9.82310 10.47319 11.37628 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.003523 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.689272 B = 7946.338526 C = 8615.441104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.074 4.074 3 C -0.160 4.160 4 C -0.109 4.109 5 H 0.096 0.904 6 C -0.146 4.146 7 C 0.515 3.485 8 O -0.541 6.541 9 N -0.725 5.725 10 C 0.132 3.868 11 C -0.110 4.110 12 H 0.075 0.925 13 C 0.142 3.858 14 N -0.605 5.605 15 C -0.223 4.223 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.160 3.840 24 C -0.112 4.112 25 H 0.071 0.929 26 C -0.134 4.134 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.400 0.600 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.017 0.983 42 H 0.252 0.748 43 H 0.106 0.894 44 H 0.012 0.988 45 H 0.044 0.956 46 H 0.054 0.946 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.393 -1.274 -12.864 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.217 4.217 4 C -0.130 4.130 5 H 0.114 0.886 6 C -0.204 4.204 7 C 0.301 3.699 8 O -0.419 6.419 9 N -0.376 5.376 10 C 0.009 3.991 11 C -0.129 4.129 12 H 0.094 0.906 13 C 0.016 3.984 14 N -0.330 5.330 15 C -0.351 4.351 16 H 0.094 0.906 17 C -0.207 4.207 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.035 3.965 24 C -0.132 4.132 25 H 0.089 0.911 26 C -0.192 4.192 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.234 0.766 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.042 0.958 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.124 0.876 44 H 0.030 0.970 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.785 -0.869 -13.326 19.193 hybrid contribution -0.200 0.140 1.363 1.384 sum -13.985 -0.729 -11.963 18.418 Atomic orbital electron populations 1.21931 0.95181 1.01723 1.01843 1.20878 0.94911 0.96786 0.96742 1.22081 1.04100 0.94802 1.00748 1.21410 0.92013 0.98520 1.01092 0.88606 1.21842 1.01878 0.94091 1.02556 1.20614 0.89900 0.77664 0.81736 1.90620 1.70471 1.44794 1.35968 1.46135 1.07956 1.58240 1.25231 1.21430 0.78568 1.01040 0.98069 1.22489 0.97703 0.98871 0.93819 0.90620 1.21328 0.91273 0.96342 0.89499 1.44481 1.14602 1.56187 1.17767 1.19076 1.01152 1.22783 0.92136 0.90556 1.24790 0.96685 1.00167 0.99036 1.69798 1.07658 1.42118 1.37458 0.86072 0.76997 0.78826 0.83606 1.21650 1.21636 1.20706 1.22017 0.97120 0.93009 0.84365 1.22634 0.92560 0.97711 1.00274 0.91079 1.21643 1.01043 0.97645 0.98830 0.92678 0.92592 0.92430 0.90709 0.93519 0.89755 0.93213 0.92059 0.91205 0.92113 0.76574 0.91761 0.91418 0.95849 0.96482 0.93728 0.87622 0.96975 0.93679 0.92668 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.84 37.16 0.33 -0.80 16 2 C -0.07 -0.73 2.15 -90.62 -0.19 -0.92 16 3 C -0.16 -1.76 8.87 37.16 0.33 -1.43 16 4 C -0.11 -1.06 2.32 -91.77 -0.21 -1.28 16 5 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.15 -1.14 8.73 37.16 0.32 -0.82 16 7 C 0.51 6.78 6.86 -10.98 -0.08 6.70 16 8 O -0.54 -8.94 13.66 5.55 0.08 -8.87 16 9 N -0.72 -9.24 5.32 -60.30 -0.32 -9.56 16 10 C 0.13 1.97 5.00 -4.04 -0.02 1.94 16 11 C -0.11 -1.81 2.45 -88.78 -0.22 -2.03 16 12 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 13 C 0.14 2.87 6.64 -3.06 -0.02 2.85 16 14 N -0.60 -15.36 3.40 -169.93 -0.58 -15.94 16 15 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 16 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 17 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 18 N -0.92 -26.77 10.09 55.49 0.56 -26.21 16 19 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.16 3.81 5.37 -2.41 -0.01 3.80 16 24 C -0.11 -2.05 3.10 -88.35 -0.27 -2.33 16 25 H 0.07 1.34 8.05 -51.93 -0.42 0.93 16 26 C -0.13 -2.06 9.31 37.16 0.35 -1.71 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.38 6.43 -51.93 -0.33 0.04 16 30 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.16 5.51 -51.93 -0.29 0.87 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.44 7.55 -51.93 -0.39 0.05 16 35 H 0.07 0.44 6.43 -51.93 -0.33 0.11 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.40 4.36 7.81 -40.82 -0.32 4.04 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 40 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.11 2.87 5.87 -51.93 -0.30 2.57 16 44 H 0.01 0.31 7.99 -51.93 -0.41 -0.10 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -31.04 361.89 -8.43 -39.47 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.65 Total: 1.43 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 0.05 Total: -2.80 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.34 Total: -51.71 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.04 -8.43 -39.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102420644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.670 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds