Wall clock time and date at job start Tue Mar 31 2020 06:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.89041 * 2 1 4 4 C 1.54912 * 111.00317 * 236.12364 * 2 1 3 5 5 N 1.47471 * 104.81180 * 204.94518 * 4 2 1 6 6 C 1.36936 * 125.63474 * 204.04718 * 5 4 2 7 7 H 1.08000 * 120.00194 * 180.02562 * 6 5 4 8 8 C 1.38812 * 119.99543 * 0.02794 * 6 5 4 9 9 N 1.31621 * 120.00268 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99848 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46823 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47144 * 119.99998 * 10 8 6 13 13 H 1.48504 * 109.46956 * 240.00199 * 10 8 6 14 14 C 1.47028 * 108.71990 * 24.07002 * 5 4 2 15 15 C 1.54319 * 107.27161 * 358.97693 * 14 5 4 16 16 H 1.09001 * 110.72909 * 96.16778 * 15 14 5 17 17 C 1.53001 * 110.72001 * 219.44529 * 15 14 5 18 18 C 1.53002 * 109.46836 * 288.51733 * 17 15 14 19 19 N 1.46498 * 109.47096 * 179.97438 * 18 17 15 20 20 C 1.34783 * 120.00080 * 179.97438 * 19 18 17 21 21 O 1.21279 * 119.99590 * 0.02562 * 20 19 18 22 22 C 1.50698 * 120.00025 * 179.97438 * 20 19 18 23 23 C 1.53002 * 109.47042 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47371 * 300.00932 * 22 20 19 25 25 C 1.53005 * 109.46709 * 60.00631 * 22 20 19 26 26 H 1.09002 * 109.47153 * 299.29483 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.29674 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.29655 * 1 2 3 29 29 H 1.08997 * 110.37032 * 323.75124 * 4 2 1 30 30 H 1.09000 * 110.36843 * 86.07702 * 4 2 1 31 31 H 0.96996 * 120.00041 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.88565 * 239.55552 * 14 5 4 33 33 H 1.09007 * 109.88262 * 118.38802 * 14 5 4 34 34 H 1.08995 * 109.47232 * 48.51474 * 17 15 14 35 35 H 1.09002 * 109.47520 * 168.51997 * 17 15 14 36 36 H 1.09002 * 109.47617 * 300.00103 * 18 17 15 37 37 H 1.09002 * 109.46851 * 59.99854 * 18 17 15 38 38 H 0.97003 * 120.00013 * 0.02562 * 19 18 17 39 39 H 1.09002 * 109.46851 * 60.00300 * 23 22 20 40 40 H 1.08998 * 109.46965 * 180.02562 * 23 22 20 41 41 H 1.09004 * 109.47133 * 300.00397 * 23 22 20 42 42 H 1.08996 * 109.47368 * 59.99830 * 24 22 20 43 43 H 1.09001 * 109.46858 * 180.02562 * 24 22 20 44 44 H 1.09003 * 109.46982 * 299.99134 * 24 22 20 45 45 H 1.09002 * 109.46899 * 60.00095 * 25 22 20 46 46 H 1.09001 * 109.46923 * 179.97438 * 25 22 20 47 47 H 1.08996 * 109.47313 * 299.99730 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4272 -1.2433 -0.7731 6 6 4.4639 -1.5675 -1.6068 7 1 5.4122 -1.8781 -1.1937 8 6 4.2960 -1.4969 -2.9829 9 7 3.1402 -1.1188 -3.4863 10 14 5.7105 -1.9386 -4.1203 11 1 6.8931 -2.3283 -3.3111 12 1 5.3101 -3.0730 -4.9908 13 1 6.0531 -0.7647 -4.9630 14 6 3.4675 -1.2738 0.6964 15 6 2.0862 -0.8076 1.2024 16 1 1.4468 -1.6627 1.4215 17 6 2.2350 0.0884 2.4337 18 6 2.6652 -0.7595 3.6324 19 7 2.8082 0.0984 4.8112 20 6 3.1813 -0.4348 5.9916 21 8 3.3990 -1.6248 6.0775 22 6 3.3290 0.4478 7.2040 23 6 3.7590 -0.4002 8.4028 24 6 4.3882 1.5174 6.9303 25 6 1.9902 1.1223 7.5099 26 1 -0.3633 0.5028 0.8962 27 1 -0.3633 -1.0276 -0.0126 28 1 -0.3634 0.5247 -0.8836 29 1 1.4519 -1.6698 -1.4032 30 1 2.1559 -0.1711 -2.0838 31 1 3.0230 -1.0691 -4.4479 32 1 4.2426 -0.5993 1.0601 33 1 3.6651 -2.2890 1.0407 34 1 2.9889 0.8512 2.2391 35 1 1.2807 0.5680 2.6517 36 1 1.9113 -1.5224 3.8272 37 1 3.6195 -1.2391 3.4145 38 1 2.6338 1.0501 4.7425 39 1 4.7129 -0.8804 8.1846 40 1 3.8655 0.2382 9.2799 41 1 3.0047 -1.1624 8.5979 42 1 4.0822 2.1216 6.0762 43 1 4.4953 2.1555 7.8075 44 1 5.3420 1.0369 6.7124 45 1 1.2356 0.3603 7.7050 46 1 2.0969 1.7604 8.3872 47 1 1.6842 1.7265 6.6559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103666777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:45 Heat of formation + Delta-G solvation = -43.698832 kcal Electronic energy + Delta-G solvation = -22795.869348 eV Core-core repulsion = 19592.140309 eV Total energy + Delta-G solvation = -3203.729039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.23174 -38.18615 -35.88515 -35.22104 -33.21040 -31.06657 -30.64091 -27.68232 -27.54166 -26.82434 -25.66028 -24.32553 -22.79006 -21.83380 -19.89355 -19.46055 -19.00067 -16.88494 -16.83010 -16.02818 -15.69515 -15.12203 -14.55965 -14.34503 -14.15423 -14.03794 -13.64433 -13.34175 -12.96762 -12.79750 -12.66314 -12.53901 -12.21214 -12.02479 -11.99534 -11.97101 -11.62655 -11.48005 -11.25275 -11.21578 -11.10588 -10.99670 -10.82429 -10.73623 -10.08800 -9.92685 -9.82947 -9.71075 -9.66785 -9.28199 -9.05319 -8.62032 -6.78285 -5.61866 -3.03078 2.60227 3.12449 3.41516 3.47183 3.49666 4.37574 4.47076 4.51993 4.57889 4.89644 5.00867 5.12706 5.21625 5.28458 5.31885 5.38627 5.48370 5.50626 5.55713 5.57910 5.58618 5.62169 5.69886 5.75551 5.81642 5.90055 5.96989 6.01429 6.03333 6.17285 6.26936 6.29019 6.35922 6.44419 6.58415 6.64286 6.72547 6.85999 7.05283 7.45332 7.58641 7.67938 7.90224 8.18787 8.40231 9.26295 9.87286 10.52848 11.41925 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024730 B = 0.003253 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.958091 B = 8605.420578 C = 9311.811336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.067 0.933 4 C 0.159 3.841 5 N -0.606 5.606 6 C -0.220 4.220 7 H 0.077 0.923 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.140 3.860 15 C -0.093 4.093 16 H 0.072 0.928 17 C -0.115 4.115 18 C 0.117 3.883 19 N -0.727 5.727 20 C 0.518 3.482 21 O -0.540 6.540 22 C -0.088 4.088 23 C -0.127 4.127 24 C -0.141 4.141 25 C -0.140 4.140 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.011 0.989 30 H 0.104 0.896 31 H 0.251 0.749 32 H 0.022 0.978 33 H 0.019 0.981 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.398 0.602 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 7.988 20.272 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.086 0.914 4 C 0.034 3.966 5 N -0.332 5.332 6 C -0.348 4.348 7 H 0.095 0.905 8 C -0.208 4.208 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.014 3.986 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.154 4.154 18 C -0.006 4.006 19 N -0.379 5.379 20 C 0.304 3.696 21 O -0.417 6.417 22 C -0.091 4.091 23 C -0.185 4.185 24 C -0.198 4.198 25 C -0.197 4.197 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.122 0.878 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.232 0.768 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.863 7.080 20.092 21.651 hybrid contribution 0.608 0.135 -0.701 0.938 sum -3.255 7.215 19.391 20.944 Atomic orbital electron populations 1.21633 0.95788 1.01229 1.00420 1.22632 0.94352 0.99337 0.97127 0.91419 1.21973 0.84091 0.95838 0.94702 1.44527 1.10548 1.78906 0.99177 1.19145 0.91104 1.37312 0.87260 0.90513 1.24782 0.97279 1.02166 0.96604 1.69817 1.22367 1.54127 1.10856 0.86009 0.81193 0.77586 0.80817 1.20544 1.21787 1.21791 1.21373 0.93709 0.97212 0.86333 1.22145 0.98112 0.97625 0.93319 0.90923 1.21782 1.01389 0.98468 0.93720 1.21498 1.02123 0.93341 0.83647 1.46098 1.69999 1.12098 1.09663 1.20563 0.76188 0.88603 0.84250 1.90703 1.49766 1.16102 1.85084 1.20829 0.97754 0.96216 0.94321 1.21655 1.02444 0.99099 0.95281 1.21870 0.98128 0.97514 1.02324 1.21864 0.95039 1.00550 1.02291 0.93879 0.93058 0.92857 0.97072 0.87805 0.93868 0.96015 0.96307 0.91261 0.91672 0.91615 0.91089 0.76781 0.91894 0.92138 0.91967 0.92058 0.91402 0.91934 0.92045 0.91401 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.29 37.16 0.35 -1.69 16 2 C -0.11 -2.11 3.08 -88.47 -0.27 -2.39 16 3 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 4 C 0.16 3.87 5.36 -2.50 -0.01 3.85 16 5 N -0.61 -15.81 3.40 -170.03 -0.58 -16.38 16 6 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 7 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 8 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 9 N -0.92 -27.18 10.09 55.49 0.56 -26.62 16 10 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 C 0.14 2.96 6.23 -3.06 -0.02 2.94 16 15 C -0.09 -1.57 2.40 -88.79 -0.21 -1.78 16 16 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 17 C -0.12 -1.49 4.73 -26.73 -0.13 -1.62 16 18 C 0.12 1.53 5.56 -4.04 -0.02 1.51 16 19 N -0.73 -7.96 5.34 -60.29 -0.32 -8.29 16 20 C 0.52 6.42 6.48 -10.98 -0.07 6.35 16 21 O -0.54 -9.04 15.98 5.56 0.09 -8.95 16 22 C -0.09 -0.76 0.87 -155.66 -0.14 -0.90 16 23 C -0.13 -1.13 7.76 37.16 0.29 -0.84 16 24 C -0.14 -1.00 8.37 37.16 0.31 -0.69 16 25 C -0.14 -0.93 8.37 37.16 0.31 -0.62 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.01 0.29 8.03 -51.93 -0.42 -0.12 16 30 H 0.10 2.85 5.88 -51.93 -0.31 2.55 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.02 0.46 7.68 -51.93 -0.40 0.06 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.91 7.93 -51.93 -0.41 0.49 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.08 7.68 -51.93 -0.40 0.68 16 38 H 0.40 3.27 7.31 -40.82 -0.30 2.97 16 39 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 42 H 0.06 0.38 7.57 -51.93 -0.39 -0.01 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.35 7.56 -51.93 -0.39 -0.04 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -32.64 367.57 -8.49 -41.13 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -8.89 Total: -1.05 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 0.13 Total: -2.76 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.34 Total: -51.29 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.64 -8.49 -41.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103666777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.570 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds