Wall clock time and date at job start Tue Mar 31 2020 06:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46734 * 2 1 4 4 C 1.53002 * 109.46945 * 119.99823 * 2 1 3 5 5 C 1.50698 * 109.46987 * 65.00270 * 4 2 1 6 6 O 1.21278 * 120.00183 * 359.97438 * 5 4 2 7 7 N 1.34771 * 119.99912 * 179.97438 * 5 4 2 8 8 C 1.47431 * 125.64533 * 359.95850 * 7 5 4 9 9 C 1.54912 * 104.82949 * 204.16043 * 8 7 5 10 10 H 1.09000 * 111.00254 * 81.07017 * 9 8 7 11 11 C 1.53004 * 111.00695 * 204.91801 * 9 8 7 12 12 C 1.55156 * 101.58604 * 322.99608 * 9 8 7 13 13 H 1.09000 * 110.86864 * 277.06858 * 12 9 8 14 14 C 1.52992 * 110.72497 * 153.86469 * 12 9 8 15 15 C 1.52997 * 109.47482 * 180.02562 * 14 12 9 16 16 N 1.46505 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.36936 * 119.99992 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99834 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00176 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00265 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46968 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47299 * 119.99957 * 21 19 17 24 24 H 1.48495 * 109.47075 * 240.00117 * 21 19 17 25 25 C 1.47023 * 125.64877 * 180.02562 * 7 5 4 26 26 H 1.09005 * 109.46713 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47447 * 300.00109 * 1 2 3 28 28 H 1.09000 * 109.47331 * 60.00263 * 1 2 3 29 29 H 1.09000 * 109.47112 * 240.00265 * 2 1 3 30 30 H 1.09001 * 109.46907 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46997 * 299.99942 * 3 2 1 32 32 H 1.09000 * 109.47105 * 60.00260 * 3 2 1 33 33 H 1.09001 * 109.47043 * 305.00025 * 4 2 1 34 34 H 1.09001 * 109.46609 * 185.00198 * 4 2 1 35 35 H 1.08992 * 110.37314 * 323.00177 * 8 7 5 36 36 H 1.09008 * 110.36286 * 85.21720 * 8 7 5 37 37 H 1.08997 * 109.47132 * 172.19914 * 11 9 8 38 38 H 1.09005 * 109.47105 * 292.20409 * 11 9 8 39 39 H 1.09001 * 109.46710 * 52.19730 * 11 9 8 40 40 H 1.09002 * 109.47103 * 60.02094 * 14 12 9 41 41 H 1.08998 * 109.46862 * 300.02906 * 14 12 9 42 42 H 1.09002 * 109.47153 * 59.99783 * 15 14 12 43 43 H 1.09001 * 109.46832 * 299.99974 * 15 14 12 44 44 H 0.96996 * 119.99606 * 0.02562 * 16 15 14 45 45 H 0.97001 * 120.00803 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.87920 * 59.49572 * 25 7 5 47 47 H 1.08996 * 109.88311 * 298.32106 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 -2.1733 1.1889 6 8 1.0110 -2.5901 0.2404 7 7 1.9853 -3.0086 2.1890 8 6 2.7478 -2.6371 3.3949 9 6 3.3986 -3.9583 3.8751 10 1 4.3024 -4.1777 3.3068 11 6 3.6951 -3.9100 5.3754 12 6 2.2810 -4.9880 3.5620 13 1 1.5392 -5.0108 4.3603 14 6 2.8748 -6.3801 3.3377 15 6 1.7502 -7.3710 3.0310 16 7 2.3190 -8.7039 2.8157 17 6 1.4973 -9.7601 2.5251 18 1 0.4300 -9.6105 2.4542 19 6 2.0361 -11.0230 2.3216 20 7 3.3367 -11.2055 2.4085 21 14 0.9153 -12.4638 1.9244 22 1 -0.4941 -11.9979 1.8837 23 1 1.2871 -13.0306 0.6032 24 1 1.0621 -13.5079 2.9701 25 6 1.6634 -4.4416 2.2575 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6442 1.2952 35 1 3.5155 -1.9041 3.1475 36 1 2.0791 -2.2418 4.1597 37 1 4.0215 -4.8936 5.7131 38 1 4.4820 -3.1804 5.5670 39 1 2.7930 -3.6215 5.9149 40 1 3.4045 -6.6981 4.2357 41 1 3.5696 -6.3478 2.4985 42 1 1.2206 -7.0530 2.1330 43 1 1.0555 -7.4032 3.8704 44 1 3.2774 -8.8383 2.8798 45 1 3.7132 -12.0881 2.2667 46 1 2.0919 -4.9591 1.3992 47 1 0.5822 -4.5783 2.2738 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103831223.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:37 Heat of formation + Delta-G solvation = -54.010548 kcal Electronic energy + Delta-G solvation = -22500.465491 eV Core-core repulsion = 19296.289303 eV Total energy + Delta-G solvation = -3204.176188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.37489 -38.41025 -35.69449 -35.11943 -33.29915 -32.05847 -30.34684 -28.82815 -27.31013 -26.65125 -26.44623 -24.08735 -22.46221 -20.91940 -20.63594 -19.94742 -19.16013 -17.17551 -16.98593 -16.55157 -15.56543 -15.34594 -14.71590 -14.40796 -14.23031 -13.97857 -13.79034 -13.58858 -13.26225 -13.06651 -12.94061 -12.72244 -12.48374 -12.28075 -12.22839 -12.06595 -11.74715 -11.46193 -11.31833 -11.14849 -11.06152 -11.02053 -10.90210 -10.83329 -10.59639 -10.42152 -10.25630 -9.92720 -9.73733 -9.63960 -8.84430 -8.67666 -6.88773 -5.73774 -3.02187 2.59066 2.90317 3.45752 3.51411 3.53737 4.26173 4.34689 4.52369 4.55526 4.65576 4.70259 4.72386 5.02790 5.12144 5.21447 5.22572 5.26356 5.33021 5.34073 5.39383 5.47062 5.50173 5.55262 5.61485 5.66852 5.72957 5.74509 5.80397 5.87828 5.92407 6.01284 6.01829 6.10309 6.14773 6.19478 6.27059 6.32727 6.40343 6.41723 6.86712 6.91156 7.46848 7.73752 8.13610 8.45508 9.56496 10.14903 10.49359 11.49408 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.003072 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.209657 B = 9111.888923 C =10068.399731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 C -0.147 4.147 4 C -0.132 4.132 5 C 0.524 3.476 6 O -0.536 6.536 7 N -0.621 5.621 8 C 0.103 3.897 9 C -0.102 4.102 10 H 0.087 0.913 11 C -0.140 4.140 12 C -0.089 4.089 13 H 0.085 0.915 14 C -0.115 4.115 15 C 0.151 3.849 16 N -0.734 5.734 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.111 3.889 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.019 0.981 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.074 0.926 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 26.254 3.204 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 C -0.204 4.204 4 C -0.172 4.172 5 C 0.313 3.687 6 O -0.413 6.413 7 N -0.355 5.355 8 C -0.020 4.020 9 C -0.121 4.121 10 H 0.105 0.895 11 C -0.198 4.198 12 C -0.109 4.109 13 H 0.104 0.896 14 C -0.153 4.153 15 C 0.024 3.976 16 N -0.378 5.378 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.011 4.011 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.037 0.963 43 H 0.035 0.965 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.133 25.996 2.582 26.124 hybrid contribution -0.192 -0.939 -0.104 0.965 sum -0.060 25.056 2.478 25.178 Atomic orbital electron populations 1.21960 0.94703 1.03510 1.00905 1.20880 0.96721 0.95251 0.97259 1.21860 1.00826 0.95830 1.01928 1.21756 1.02631 0.91959 1.00807 1.20397 0.79355 0.87835 0.81121 1.90690 1.40060 1.77846 1.32695 1.48606 1.55577 1.10345 1.20956 1.22436 0.94823 0.97739 0.86994 1.22433 0.98613 0.93721 0.97347 0.89474 1.21697 1.01563 1.02583 0.93946 1.22282 0.97009 0.95028 0.96538 0.89619 1.21727 0.99082 0.92420 1.02060 1.20683 0.93876 0.85761 0.97314 1.42374 1.07055 1.03067 1.85335 1.19291 0.90533 0.87556 1.39430 0.91148 1.24743 0.95858 0.97655 1.02918 1.69669 1.09696 1.22110 1.56916 0.86113 0.79690 0.82827 0.77582 1.20536 1.21858 1.21877 1.22107 1.00514 0.79810 0.98716 0.90613 0.93462 0.92965 0.90374 0.92717 0.92381 0.92711 0.89142 0.89129 0.90817 0.91265 0.91555 0.92527 0.92406 0.91326 0.91722 0.96300 0.96465 0.78348 0.93601 0.90781 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.93 37.16 0.33 -1.18 16 2 C -0.08 -0.74 2.57 -90.62 -0.23 -0.98 16 3 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 4 C -0.13 -1.14 4.18 -27.88 -0.12 -1.26 16 5 C 0.52 6.69 7.57 -10.99 -0.08 6.61 16 6 O -0.54 -8.96 14.29 5.56 0.08 -8.88 16 7 N -0.62 -7.39 3.33 -170.52 -0.57 -7.96 16 8 C 0.10 0.88 6.16 -2.52 -0.02 0.87 16 9 C -0.10 -0.96 3.09 -88.47 -0.27 -1.24 16 10 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 11 C -0.14 -1.11 9.31 37.16 0.35 -0.76 16 12 C -0.09 -1.08 2.45 -88.79 -0.22 -1.30 16 13 H 0.09 1.00 8.04 -51.93 -0.42 0.59 16 14 C -0.11 -1.78 4.71 -26.74 -0.13 -1.91 16 15 C 0.15 3.07 6.11 -4.04 -0.02 3.04 16 16 N -0.73 -19.09 5.60 -59.91 -0.34 -19.43 16 17 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 18 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 20 N -0.93 -28.82 13.06 55.49 0.72 -28.10 16 21 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 C 0.11 1.52 5.61 -3.06 -0.02 1.50 16 26 H 0.07 0.96 5.95 -51.93 -0.31 0.65 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.84 7.96 -51.93 -0.41 0.42 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.64 7.84 -51.93 -0.41 0.23 16 35 H 0.07 0.49 7.47 -51.93 -0.39 0.10 16 36 H 0.07 0.51 7.99 -51.92 -0.41 0.10 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.05 8.06 -51.93 -0.42 0.63 16 42 H 0.02 0.40 7.49 -51.93 -0.39 0.01 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.07 1.17 7.76 -51.93 -0.40 0.77 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -33.28 370.58 -8.78 -42.06 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.91 Total: 3.63 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -0.33 Total: -4.79 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.18 Total: -55.48 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.28 -8.78 -42.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103831223.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.948 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds