Wall clock time and date at job start Tue Mar 31 2020 06:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 110.31260 * 2 1 4 4 C 1.54388 * 110.33744 * 237.70647 * 2 1 3 5 5 N 1.48148 * 104.61969 * 217.26373 * 4 2 1 6 6 C 1.34775 * 127.84284 * 219.59158 * 5 4 2 7 7 O 1.21286 * 120.00230 * 175.44723 * 6 5 4 8 8 C 1.50701 * 119.99732 * 355.44119 * 6 5 4 9 9 C 1.53006 * 109.47015 * 188.39323 * 8 6 5 10 10 C 1.52993 * 109.47348 * 308.39496 * 8 6 5 11 11 C 1.52999 * 109.46942 * 68.39802 * 8 6 5 12 12 C 1.48147 * 104.32149 * 39.59004 * 5 4 2 13 13 C 1.54289 * 110.34060 * 122.17941 * 2 1 3 14 14 H 1.08994 * 110.34100 * 359.88395 * 13 2 1 15 15 C 1.53004 * 110.33583 * 237.73662 * 13 2 1 16 16 C 1.53007 * 109.46800 * 174.99637 * 15 13 2 17 17 N 1.46495 * 109.47036 * 179.97438 * 16 15 13 18 18 C 1.36944 * 120.00047 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99622 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99797 * 180.02562 * 18 17 16 21 21 N 1.31611 * 120.00371 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99458 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47265 * 60.00079 * 22 20 18 24 24 H 1.48500 * 109.46902 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47017 * 299.99863 * 22 20 18 26 26 H 1.09007 * 109.46851 * 297.83317 * 1 2 3 27 27 H 1.08989 * 109.47848 * 177.82702 * 1 2 3 28 28 H 1.09001 * 109.46628 * 57.82171 * 1 2 3 29 29 H 1.08999 * 110.41341 * 336.05107 * 4 2 1 30 30 H 1.09003 * 110.40462 * 98.48752 * 4 2 1 31 31 H 1.09001 * 109.46957 * 60.00475 * 9 8 6 32 32 H 1.08998 * 109.47202 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47003 * 300.00291 * 9 8 6 34 34 H 1.09009 * 109.46847 * 60.00259 * 10 8 6 35 35 H 1.09002 * 109.47366 * 179.97438 * 10 8 6 36 36 H 1.09001 * 109.47338 * 299.99962 * 10 8 6 37 37 H 1.09004 * 109.47464 * 67.08996 * 11 8 6 38 38 H 1.08997 * 109.47018 * 187.08923 * 11 8 6 39 39 H 1.08998 * 109.47402 * 307.08870 * 11 8 6 40 40 H 1.09003 * 110.41014 * 201.63008 * 12 5 4 41 41 H 1.08996 * 110.40822 * 79.19555 * 12 5 4 42 42 H 1.08995 * 109.47204 * 294.99538 * 15 13 2 43 43 H 1.09000 * 109.47358 * 55.00161 * 15 13 2 44 44 H 1.09003 * 109.47297 * 300.00259 * 16 15 13 45 45 H 1.09000 * 109.46738 * 60.00143 * 16 15 13 46 46 H 0.97000 * 120.00190 * 0.02562 * 17 16 15 47 47 H 0.97002 * 120.00138 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0221 0.0000 4 6 2.0666 -0.7734 -1.2237 5 7 3.2663 -1.4826 -0.7212 6 6 4.4423 -1.6680 -1.3529 7 8 5.3640 -2.2029 -0.7738 8 6 4.6119 -1.2108 -2.7788 9 6 5.9482 -1.7207 -3.3223 10 6 3.4694 -1.7657 -3.6317 11 6 4.5906 0.3182 -2.8301 12 6 2.8800 -1.9418 0.6333 13 6 2.0663 -0.7705 1.2244 14 1 1.2397 -1.1471 1.8269 15 6 2.9692 0.1326 2.0672 16 6 3.3888 -0.6090 3.3381 17 7 4.2538 0.2554 4.1448 18 6 4.7551 -0.1974 5.3360 19 1 4.5130 -1.1920 5.6805 20 6 5.5743 0.6218 6.1005 21 7 5.8689 1.8340 5.6809 22 14 6.2586 0.0038 7.7251 23 1 7.0847 -1.2068 7.4858 24 1 7.0984 1.0613 8.3429 25 1 5.1372 -0.3347 8.6379 26 1 -0.3633 0.4799 0.9088 27 1 -0.3634 -1.0268 -0.0390 28 1 -0.3632 0.5473 -0.8698 29 1 1.3233 -1.4877 -1.5778 30 1 2.3400 -0.0816 -2.0205 31 1 5.9635 -2.8100 -3.2858 32 1 6.0712 -1.3896 -4.3535 33 1 6.7622 -1.3253 -2.7147 34 1 2.5174 -1.4024 -3.2445 35 1 3.5918 -1.4347 -4.6630 36 1 3.4846 -2.8550 -3.5952 37 1 5.4749 0.7110 -2.3283 38 1 4.5864 0.6468 -3.8693 39 1 3.6951 0.6861 -2.3291 40 1 3.7671 -2.1315 1.2377 41 1 2.2637 -2.8385 0.5693 42 1 3.8561 0.3983 1.4920 43 1 2.4266 1.0385 2.3376 44 1 2.5019 -0.8747 3.9133 45 1 3.9314 -1.5148 3.0677 46 1 4.4709 1.1488 3.8355 47 1 6.4416 2.4063 6.2150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104939159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:40 Heat of formation + Delta-G solvation = -38.448803 kcal Electronic energy + Delta-G solvation = -23403.780870 eV Core-core repulsion = 20200.279490 eV Total energy + Delta-G solvation = -3203.501380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.61566 -38.33222 -35.79661 -34.97535 -33.00230 -32.06889 -30.11778 -27.73676 -27.60772 -26.85987 -26.49274 -24.61511 -22.82266 -21.87366 -20.51201 -19.72865 -18.88001 -17.01339 -16.64390 -16.13924 -15.80089 -14.80376 -14.63885 -14.53949 -14.03777 -13.95424 -13.81046 -13.38061 -13.18900 -13.04598 -12.74808 -12.60790 -12.55167 -12.27055 -12.08303 -11.98433 -11.89364 -11.69023 -11.44174 -11.19177 -11.14169 -10.94272 -10.81124 -10.73859 -10.50199 -10.33655 -10.26292 -9.90653 -9.59535 -9.57879 -8.79047 -8.67439 -6.84127 -5.69406 -2.97606 2.68713 2.94423 3.49378 3.53080 3.54581 4.24332 4.42590 4.49415 4.60855 4.67478 4.70081 4.77073 5.05998 5.12235 5.17859 5.23116 5.31236 5.34440 5.39519 5.46861 5.53372 5.55744 5.61364 5.63740 5.68143 5.72081 5.75728 5.82138 5.88514 5.94803 6.00707 6.02328 6.07185 6.11538 6.16814 6.18312 6.37432 6.45312 6.53094 6.92763 6.98294 7.59741 7.76076 8.22807 8.49812 9.60471 10.19636 10.54086 11.53754 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.003967 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.899796 B = 7056.461060 C = 7912.335302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 H 0.083 0.917 4 C 0.096 3.904 5 N -0.619 5.619 6 C 0.541 3.459 7 O -0.533 6.533 8 C -0.082 4.082 9 C -0.128 4.128 10 C -0.150 4.150 11 C -0.147 4.147 12 C 0.104 3.896 13 C -0.093 4.093 14 H 0.087 0.913 15 C -0.116 4.116 16 C 0.152 3.848 17 N -0.733 5.733 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.017 0.983 45 H 0.019 0.981 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.340 -4.421 -22.077 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.102 0.898 4 C -0.027 4.027 5 N -0.353 5.353 6 C 0.329 3.671 7 O -0.409 6.409 8 C -0.085 4.085 9 C -0.185 4.185 10 C -0.207 4.207 11 C -0.204 4.204 12 C -0.019 4.019 13 C -0.112 4.112 14 H 0.105 0.895 15 C -0.154 4.154 16 C 0.025 3.975 17 N -0.377 5.377 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.216 0.784 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.674 -4.843 -21.676 24.642 hybrid contribution 0.423 0.023 0.881 0.977 sum -10.251 -4.820 -20.795 23.680 Atomic orbital electron populations 1.21817 0.94051 1.01909 1.02128 1.22228 0.96004 1.00046 0.94232 0.89825 1.22802 0.87067 0.95620 0.97176 1.48901 1.12853 1.55949 1.17578 1.20218 0.80451 0.78525 0.87878 1.90738 1.38962 1.43624 1.67595 1.20747 0.98299 0.97497 0.91978 1.21673 0.95014 1.01582 1.00250 1.22092 0.97541 1.01420 0.99625 1.22005 1.03186 0.92500 1.02719 1.22522 1.00035 0.96201 0.83101 1.22170 0.98144 0.95401 0.95520 0.89475 1.21763 0.98753 0.98234 0.96611 1.20697 0.93309 0.93564 0.89959 1.42349 1.57480 1.15896 1.21999 1.19207 1.23143 0.98513 0.96080 0.91285 1.24731 1.00830 0.96326 0.99170 1.69651 1.41532 1.08059 1.39170 0.86262 0.78677 0.77520 0.83727 1.21258 1.21684 1.21291 0.91911 0.92476 0.92634 0.91068 0.89564 0.92179 0.92090 0.91574 0.91332 0.91556 0.92248 0.91662 0.91408 0.91571 0.88943 0.91535 0.92032 0.91771 0.96547 0.96372 0.78389 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.92 37.16 0.33 -0.74 16 2 C -0.11 -1.02 3.31 -89.22 -0.30 -1.32 16 3 H 0.08 0.86 7.71 -51.93 -0.40 0.46 16 4 C 0.10 0.86 4.34 -2.41 -0.01 0.85 16 5 N -0.62 -7.82 3.28 -169.30 -0.55 -8.37 16 6 C 0.54 7.84 6.62 -10.99 -0.07 7.77 16 7 O -0.53 -10.25 16.23 5.55 0.09 -10.16 16 8 C -0.08 -0.86 0.75 -155.66 -0.12 -0.97 16 9 C -0.13 -1.34 7.81 37.16 0.29 -1.05 16 10 C -0.15 -1.16 8.18 37.15 0.30 -0.85 16 11 C -0.15 -1.34 8.27 37.16 0.31 -1.03 16 12 C 0.10 1.40 6.46 -2.41 -0.02 1.39 16 13 C -0.09 -1.16 2.72 -89.22 -0.24 -1.40 16 14 H 0.09 1.01 7.71 -51.93 -0.40 0.61 16 15 C -0.12 -1.93 4.54 -26.73 -0.12 -2.05 16 16 C 0.15 3.23 6.12 -4.04 -0.02 3.20 16 17 N -0.73 -19.76 5.60 -59.91 -0.34 -20.10 16 18 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.94 -29.38 13.06 55.49 0.72 -28.66 16 22 Si 0.91 23.26 29.55 -169.99 -5.02 18.24 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.53 7.56 -51.93 -0.39 0.13 16 30 H 0.09 0.65 4.10 -51.93 -0.21 0.44 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.80 8.01 -51.93 -0.42 0.39 16 34 H 0.07 0.47 4.64 -51.92 -0.24 0.23 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.57 5.26 -51.93 -0.27 0.30 16 40 H 0.09 1.57 6.11 -51.93 -0.32 1.25 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.40 6.66 -51.93 -0.35 0.06 16 46 H 0.38 10.79 7.67 -40.82 -0.31 10.48 16 47 H 0.25 7.72 8.31 -40.82 -0.34 7.39 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -34.70 359.92 -7.94 -42.63 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -8.35 Total: 4.94 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 0.09 Total: -3.94 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.17 Total: -57.13 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.70 -7.94 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104939159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.185 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds