Wall clock time and date at job start Tue Mar 31 2020 06:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 C 1.52999 * 109.46811 * 294.99812 * 4 2 1 6 6 C 1.50696 * 109.47144 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99862 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00235 * 180.02562 * 6 5 4 9 9 C 1.47489 * 127.03497 * 180.02562 * 8 6 5 10 10 C 1.54000 * 107.08419 * 154.51542 * 9 8 6 11 11 H 1.08998 * 110.32849 * 120.19732 * 10 9 8 12 12 C 1.53001 * 110.32728 * 242.31154 * 10 9 8 13 13 N 1.46496 * 109.46952 * 293.54423 * 12 10 9 14 14 C 1.36942 * 120.00236 * 179.97438 * 13 12 10 15 15 H 1.08007 * 119.99817 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00542 * 180.02562 * 14 13 12 17 17 N 1.31624 * 119.99980 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00344 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46794 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46864 * 120.00373 * 18 16 14 21 21 H 1.48498 * 109.47093 * 240.00465 * 18 16 14 22 22 C 1.54620 * 105.04445 * 1.30581 * 10 9 8 23 23 H 1.09002 * 110.73901 * 263.50663 * 22 10 9 24 24 C 1.53003 * 110.73913 * 140.36785 * 22 10 9 25 25 C 1.48111 * 127.03377 * 359.68305 * 8 6 5 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 34 34 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 35 35 H 1.09001 * 109.47273 * 300.00152 * 5 4 2 36 36 H 1.08998 * 109.47609 * 60.00099 * 5 4 2 37 37 H 1.08999 * 109.91380 * 273.87780 * 9 8 6 38 38 H 1.08999 * 109.91003 * 35.15402 * 9 8 6 39 39 H 1.08992 * 109.47187 * 53.54660 * 12 10 9 40 40 H 1.09001 * 109.47362 * 173.54624 * 12 10 9 41 41 H 0.96996 * 120.00448 * 0.02562 * 13 12 10 42 42 H 0.96999 * 120.00057 * 179.97438 * 17 16 14 43 43 H 1.09006 * 109.46985 * 59.99744 * 24 22 10 44 44 H 1.08999 * 109.47121 * 179.97438 * 24 22 10 45 45 H 1.08997 * 109.46906 * 299.99866 * 24 22 10 46 46 H 1.08999 * 110.66106 * 337.77041 * 25 8 6 47 47 H 1.08999 * 110.66419 * 100.88801 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6352 -2.1954 -1.1881 6 6 2.1381 -2.9059 -2.4183 7 8 2.7586 -2.2933 -3.2612 8 7 1.8973 -4.2218 -2.5822 9 6 2.3141 -5.0665 -3.7172 10 6 2.4021 -6.5130 -3.1962 11 1 1.7197 -7.1572 -3.7505 12 6 3.8360 -7.0337 -3.3130 13 7 4.1992 -7.1508 -4.7274 14 6 5.4441 -7.5996 -5.0798 15 1 6.1580 -7.8677 -4.3149 16 6 5.7885 -7.7101 -6.4199 17 7 4.9187 -7.3829 -7.3521 18 14 7.4864 -8.3230 -6.9005 19 1 8.2697 -8.6226 -5.6750 20 1 7.3546 -9.5563 -7.7171 21 1 8.1844 -7.2778 -7.6915 22 6 1.9772 -6.4315 -1.7117 23 1 2.8510 -6.3699 -1.0630 24 6 1.1058 -7.6301 -1.3310 25 6 1.1660 -5.1170 -1.6562 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6054 -0.2616 -2.1371 34 1 3.1263 -0.6443 -1.2952 35 1 2.0699 -2.6549 -0.3004 36 1 0.5490 -2.2724 -1.1422 37 1 1.5763 -5.0041 -4.5170 38 1 3.2891 -4.7433 -4.0820 39 1 4.5160 -6.3395 -2.8195 40 1 3.9073 -8.0119 -2.8375 41 1 3.5583 -6.9097 -5.4144 42 1 5.1595 -7.4598 -8.2886 43 1 1.6673 -8.5514 -1.4863 44 1 0.8189 -7.5522 -0.2823 45 1 0.2108 -7.6407 -1.9531 46 1 1.1663 -4.7083 -0.6458 47 1 0.1467 -5.2818 -2.0053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105806645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:40 Heat of formation + Delta-G solvation = -53.453483 kcal Electronic energy + Delta-G solvation = -22639.952133 eV Core-core repulsion = 19435.800101 eV Total energy + Delta-G solvation = -3204.152032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.06837 -38.12517 -36.59294 -34.60444 -32.82050 -31.48556 -31.06194 -28.95491 -27.41929 -26.41478 -25.81921 -24.06394 -22.99675 -21.12065 -20.20248 -19.73188 -19.04978 -17.22556 -16.70135 -16.17599 -15.77382 -15.10168 -14.79987 -14.51002 -14.10926 -14.05647 -13.64895 -13.38624 -13.22513 -13.12074 -12.80598 -12.57488 -12.50194 -12.33832 -12.03189 -11.87303 -11.75845 -11.48459 -11.40027 -11.09125 -11.00291 -10.85288 -10.84489 -10.73697 -10.57730 -10.46899 -10.28009 -9.94174 -9.66189 -9.61057 -8.85627 -8.49702 -6.89490 -5.73281 -3.02171 2.79259 3.09325 3.46155 3.51438 3.53911 4.40224 4.54331 4.60623 4.63856 4.66662 4.77632 4.86324 5.01059 5.09043 5.21225 5.30479 5.37451 5.38522 5.43793 5.48675 5.50988 5.53991 5.59917 5.62014 5.68167 5.74072 5.80255 5.81830 5.85084 5.98357 6.02667 6.10333 6.14490 6.18302 6.21791 6.24200 6.33308 6.47265 6.51304 6.74524 6.89514 7.71825 7.73365 8.33598 8.45323 9.56580 10.13607 10.48156 11.49639 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019504 B = 0.003416 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.255545 B = 8195.140819 C = 9188.247107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.101 4.101 5 C -0.135 4.135 6 C 0.525 3.475 7 O -0.539 6.539 8 N -0.622 5.622 9 C 0.110 3.890 10 C -0.103 4.103 11 H 0.086 0.914 12 C 0.163 3.837 13 N -0.733 5.733 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.291 1.291 22 C -0.101 4.101 23 H 0.083 0.917 24 C -0.139 4.139 25 C 0.104 3.896 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.019 0.981 40 H 0.021 0.979 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.866 9.848 18.399 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.138 4.138 5 C -0.175 4.175 6 C 0.314 3.686 7 O -0.415 6.415 8 N -0.356 5.356 9 C -0.012 4.012 10 C -0.122 4.122 11 H 0.104 0.896 12 C 0.036 3.964 13 N -0.377 5.377 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.738 3.262 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.218 1.218 22 C -0.121 4.121 23 H 0.102 0.898 24 C -0.197 4.197 25 C -0.019 4.019 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.036 0.964 40 H 0.039 0.961 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.336 10.238 17.954 24.070 hybrid contribution 0.692 -0.410 -0.603 1.006 sum -11.644 9.827 17.351 23.092 Atomic orbital electron populations 1.21914 0.95368 1.01749 1.01704 1.21147 0.95815 0.96396 0.98285 1.21826 1.01153 0.95848 1.01635 1.21426 1.01961 0.92593 0.97867 1.21708 1.02536 0.96820 0.96441 1.20372 0.79703 0.80259 0.88249 1.90735 1.40835 1.65009 1.44956 1.48897 1.55433 1.07862 1.23424 1.22158 1.01914 0.89043 0.88060 1.22382 0.99615 0.95453 0.94749 0.89610 1.20687 0.90671 0.96925 0.88165 1.42374 1.15175 1.79625 1.00514 1.19252 0.90754 1.35695 0.91301 0.91198 1.24743 0.98133 1.02367 0.95741 1.69669 1.34316 1.54601 0.99511 0.86120 0.83967 0.78014 0.78114 1.20583 1.21886 1.21848 1.22224 0.98664 0.94031 0.97151 0.89849 1.21727 0.99505 0.97645 1.00807 1.22543 0.95725 0.89892 0.93751 0.92870 0.92544 0.92612 0.91234 0.92837 0.92578 0.92610 0.91142 0.91087 0.89216 0.89074 0.91945 0.89215 0.96355 0.96077 0.78250 0.93562 0.91767 0.92712 0.92433 0.90524 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.95 37.16 0.33 -0.71 16 2 C -0.10 -0.77 2.92 -90.62 -0.26 -1.04 16 3 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 4 C -0.10 -1.05 3.97 -26.73 -0.11 -1.15 16 5 C -0.14 -1.38 4.39 -27.89 -0.12 -1.50 16 6 C 0.53 8.01 7.89 -10.99 -0.09 7.92 16 7 O -0.54 -10.73 16.32 5.55 0.09 -10.64 16 8 N -0.62 -9.00 3.29 -170.01 -0.56 -9.56 16 9 C 0.11 1.90 6.31 -2.98 -0.02 1.88 16 10 C -0.10 -1.62 2.64 -89.25 -0.24 -1.85 16 11 H 0.09 1.35 7.85 -51.93 -0.41 0.94 16 12 C 0.16 3.29 5.35 -4.04 -0.02 3.27 16 13 N -0.73 -18.83 5.33 -59.91 -0.32 -19.15 16 14 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 15 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 18 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 C -0.10 -1.18 3.18 -88.95 -0.28 -1.46 16 23 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 24 C -0.14 -1.33 9.17 37.16 0.34 -0.99 16 25 C 0.10 1.09 6.38 -2.34 -0.01 1.07 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 34 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.09 0.77 7.90 -51.93 -0.41 0.36 16 36 H 0.09 0.76 6.56 -51.93 -0.34 0.42 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.92 7.48 -51.93 -0.39 1.53 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.38 10.34 7.51 -40.82 -0.31 10.03 16 42 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 46 H 0.08 0.61 7.23 -51.93 -0.38 0.24 16 47 H 0.07 0.67 8.02 -51.93 -0.42 0.25 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -33.57 371.72 -8.73 -42.30 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -8.85 Total: 4.43 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -0.39 Total: -2.83 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.15 Total: -56.77 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.57 -8.73 -42.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105806645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.154 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds