Wall clock time and date at job start Tue Mar 31 2020 06:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 110.88596 * 2 1 4 4 C 1.54907 * 111.00764 * 236.11838 * 2 1 3 5 5 N 1.47420 * 104.83524 * 204.87946 * 4 2 1 6 6 C 1.34780 * 125.65180 * 204.09058 * 5 4 2 7 7 O 1.21275 * 120.00008 * 180.02562 * 6 5 4 8 8 C 1.50701 * 119.99768 * 0.04091 * 6 5 4 9 9 C 1.52995 * 109.47107 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47266 * 59.99689 * 9 8 6 11 11 C 1.52995 * 109.47355 * 179.97438 * 9 8 6 12 12 C 1.53007 * 109.47099 * 300.00082 * 9 8 6 13 13 C 1.47026 * 108.70428 * 24.12518 * 5 4 2 14 14 C 1.54330 * 107.26840 * 358.94103 * 13 5 4 15 15 H 1.08998 * 110.71700 * 96.16950 * 14 13 5 16 16 C 1.52994 * 110.71826 * 219.44364 * 14 13 5 17 17 N 1.46497 * 109.47309 * 293.54328 * 16 14 13 18 18 C 1.36941 * 120.00367 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99535 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00162 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00137 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00026 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47148 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46988 * 120.00024 * 22 20 18 25 25 H 1.48493 * 109.47363 * 239.99842 * 22 20 18 26 26 H 1.09002 * 109.47359 * 182.42598 * 1 2 3 27 27 H 1.08995 * 109.47577 * 302.43035 * 1 2 3 28 28 H 1.09006 * 109.47268 * 62.42982 * 1 2 3 29 29 H 1.08997 * 110.36783 * 86.03665 * 4 2 1 30 30 H 1.08999 * 110.36448 * 323.71406 * 4 2 1 31 31 H 1.09001 * 109.47109 * 300.00058 * 8 6 5 32 32 H 1.09004 * 109.46946 * 59.99745 * 8 6 5 33 33 H 1.09001 * 109.46657 * 60.00001 * 10 9 8 34 34 H 1.08994 * 109.47324 * 179.97438 * 10 9 8 35 35 H 1.08997 * 109.47175 * 300.00381 * 10 9 8 36 36 H 1.09007 * 109.47276 * 59.99873 * 11 9 8 37 37 H 1.08994 * 109.47545 * 179.97438 * 11 9 8 38 38 H 1.09001 * 109.47033 * 300.00283 * 11 9 8 39 39 H 1.08997 * 109.47117 * 59.99757 * 12 9 8 40 40 H 1.09003 * 109.46944 * 179.97438 * 12 9 8 41 41 H 1.09007 * 109.46838 * 299.99702 * 12 9 8 42 42 H 1.08998 * 109.88351 * 118.35702 * 13 5 4 43 43 H 1.08998 * 109.88379 * 239.52492 * 13 5 4 44 44 H 1.08997 * 109.47343 * 53.54751 * 16 14 13 45 45 H 1.09004 * 109.47006 * 173.54978 * 16 14 13 46 46 H 0.96998 * 119.99925 * 0.02562 * 17 16 14 47 47 H 0.97007 * 119.99925 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4275 -1.2420 -0.7741 6 6 4.4479 -1.5599 -1.5951 7 8 5.5133 -1.9078 -1.1317 8 6 4.2652 -1.4828 -3.0890 9 6 5.5656 -1.8916 -3.7837 10 6 5.9269 -3.3245 -3.3873 11 6 5.3799 -1.8139 -5.3003 12 6 6.6904 -0.9457 -3.3580 13 6 3.4683 -1.2732 0.6953 14 6 2.0869 -0.8077 1.2020 15 1 1.4481 -1.6633 1.4208 16 6 2.2357 0.0878 2.4335 17 7 2.7629 -0.7008 3.5499 18 6 2.9803 -0.1076 4.7649 19 1 2.7627 0.9415 4.9002 20 6 3.4804 -0.8548 5.8225 21 7 3.7461 -2.1333 5.6574 22 14 3.7762 -0.0457 7.4800 23 1 3.3997 1.3887 7.4049 24 1 2.9511 -0.7201 8.5143 25 1 5.2124 -0.1629 7.8388 26 1 -0.3634 -1.0267 0.0435 27 1 -0.3634 0.5511 0.8673 28 1 -0.3634 0.4757 -0.9110 29 1 2.1553 -0.1714 -2.0839 30 1 1.4523 -1.6703 -1.4025 31 1 3.4635 -2.1563 -3.3922 32 1 4.0082 -0.4618 -3.3714 33 1 5.1256 -3.9983 -3.6906 34 1 6.8531 -3.6159 -3.8826 35 1 6.0591 -3.3803 -2.3069 36 1 5.1223 -0.7932 -5.5831 37 1 6.3064 -2.1047 -5.7952 38 1 4.5787 -2.4880 -5.6033 39 1 6.8226 -1.0015 -2.2775 40 1 7.6170 -1.2373 -3.8525 41 1 6.4330 0.0752 -3.6404 42 1 3.6665 -2.2883 1.0391 43 1 4.2432 -0.5984 1.0590 44 1 2.9226 0.9037 2.2087 45 1 1.2625 0.4966 2.7053 46 1 2.9581 -1.6432 3.4285 47 1 4.0952 -2.6555 6.3967 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105828863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:43 Heat of formation + Delta-G solvation = -44.315241 kcal Electronic energy + Delta-G solvation = -23110.886033 eV Core-core repulsion = 19907.130265 eV Total energy + Delta-G solvation = -3203.755768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.34997 -38.50569 -36.26030 -34.65004 -32.89579 -31.40629 -29.69156 -28.10612 -27.30166 -27.19892 -26.31730 -25.11044 -23.09079 -21.15464 -20.15980 -19.55611 -18.58384 -17.22444 -16.75874 -16.18900 -15.46004 -14.83693 -14.59157 -14.50861 -14.33453 -13.96164 -13.62631 -13.49845 -13.16488 -13.00321 -12.78693 -12.44566 -12.31252 -12.13111 -11.95499 -11.92407 -11.79884 -11.45921 -11.18517 -11.12186 -11.06174 -10.89267 -10.82956 -10.73306 -10.58062 -10.42031 -10.35948 -9.96487 -9.65866 -9.34465 -8.86988 -8.44760 -6.91355 -5.74718 -3.03930 2.75164 3.09233 3.44989 3.50261 3.52794 4.43390 4.51047 4.57462 4.60537 4.71365 4.83894 4.89159 5.12840 5.28625 5.33913 5.36641 5.42238 5.45073 5.50482 5.51247 5.52938 5.60294 5.67726 5.72455 5.80793 5.81390 5.82027 5.99908 6.03450 6.04785 6.05964 6.13505 6.17343 6.22668 6.36919 6.40787 6.47199 6.47787 6.57531 6.70608 6.84798 7.67987 7.71700 8.33646 8.43594 9.54968 10.11894 10.46293 11.48058 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.003696 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.486040 B = 7573.014788 C = 8536.106962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.086 0.914 4 C 0.104 3.896 5 N -0.619 5.619 6 C 0.524 3.476 7 O -0.529 6.529 8 C -0.127 4.127 9 C -0.052 4.052 10 C -0.154 4.154 11 C -0.141 4.141 12 C -0.154 4.154 13 C 0.116 3.884 14 C -0.100 4.100 15 H 0.085 0.915 16 C 0.165 3.835 17 N -0.733 5.733 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.020 0.980 45 H 0.024 0.976 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 2.131 -22.477 22.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.119 4.119 3 H 0.104 0.896 4 C -0.019 4.019 5 N -0.353 5.353 6 C 0.313 3.687 7 O -0.407 6.407 8 C -0.167 4.167 9 C -0.052 4.052 10 C -0.211 4.211 11 C -0.198 4.198 12 C -0.211 4.211 13 C -0.006 4.006 14 C -0.119 4.119 15 H 0.103 0.897 16 C 0.037 3.963 17 N -0.377 5.377 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.038 0.962 45 H 0.041 0.959 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.979 2.045 -22.148 22.441 hybrid contribution 0.126 0.086 0.882 0.895 sum -2.854 2.131 -21.266 21.562 Atomic orbital electron populations 1.21687 0.93722 1.02256 1.01981 1.22364 0.96170 0.99507 0.93876 0.89596 1.22405 0.83585 0.98173 0.97786 1.48657 1.12176 1.66830 1.07676 1.20316 0.82756 0.77010 0.88586 1.90599 1.25499 1.47001 1.77600 1.21760 0.99799 1.03409 0.91702 1.20276 0.93891 0.96867 0.94197 1.22113 1.00371 0.94153 1.04477 1.21892 1.01691 1.01456 0.94784 1.22116 0.97080 0.97495 1.04426 1.22025 0.98245 1.02284 0.78012 1.22527 0.95169 0.99154 0.95084 0.89691 1.20625 0.96609 0.92905 0.86140 1.42368 1.77810 1.09971 1.07566 1.19252 1.35845 0.94164 0.87877 0.91150 1.24747 1.02059 0.95828 0.98306 1.69673 1.50754 1.06103 1.31483 0.86123 0.77503 0.78300 0.84297 1.20570 1.21888 1.21847 0.92377 0.91671 0.92680 0.90960 0.91365 0.89284 0.89283 0.93665 0.93170 0.89569 0.92797 0.92444 0.92785 0.89571 0.93169 0.93655 0.91299 0.90692 0.96213 0.95855 0.78230 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.30 37.15 0.35 -0.98 16 2 C -0.10 -1.14 3.08 -88.48 -0.27 -1.42 16 3 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 4 C 0.10 1.08 6.16 -2.53 -0.02 1.06 16 5 N -0.62 -8.66 3.33 -170.52 -0.57 -9.23 16 6 C 0.52 7.51 7.26 -10.98 -0.08 7.43 16 7 O -0.53 -9.45 11.67 5.56 0.06 -9.38 16 8 C -0.13 -1.30 3.78 -27.88 -0.11 -1.40 16 9 C -0.05 -0.54 0.77 -154.51 -0.12 -0.66 16 10 C -0.15 -1.78 8.17 37.16 0.30 -1.47 16 11 C -0.14 -1.13 8.47 37.15 0.31 -0.81 16 12 C -0.15 -1.78 8.18 37.16 0.30 -1.48 16 13 C 0.12 1.97 6.15 -3.06 -0.02 1.95 16 14 C -0.10 -1.55 2.49 -88.79 -0.22 -1.77 16 15 H 0.08 1.34 8.02 -51.93 -0.42 0.93 16 16 C 0.17 3.23 5.58 -4.05 -0.02 3.20 16 17 N -0.73 -18.51 5.45 -59.91 -0.33 -18.84 16 18 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 22 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.59 7.48 -51.93 -0.39 0.20 16 30 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.77 7.85 -51.93 -0.41 0.36 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 1.25 5.51 -51.93 -0.29 0.97 16 36 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 1.26 5.51 -51.93 -0.29 0.97 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.04 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.07 1.46 7.77 -51.93 -0.40 1.06 16 44 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.38 10.25 7.52 -40.82 -0.31 9.94 16 47 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -32.02 365.01 -8.25 -40.27 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -8.79 Total: 5.62 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 0.17 Total: -3.75 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.17 Total: -55.88 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.06 Total: -9.38 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.02 -8.25 -40.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105828863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.044 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds