Wall clock time and date at job start Tue Mar 31 2020 06:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53002 * 109.46817 * 179.97438 * 4 2 1 7 7 C 1.50701 * 109.47212 * 59.99639 * 4 2 1 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 4 2 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 4 2 10 10 C 1.48115 * 127.02917 * 179.70654 * 9 7 4 11 11 C 1.54597 * 103.42225 * 219.29102 * 10 9 7 12 12 H 1.08998 * 110.57763 * 81.17356 * 11 10 9 13 13 C 1.53002 * 110.98862 * 204.37895 * 11 10 9 14 14 N 1.46505 * 109.46856 * 288.65355 * 13 11 10 15 15 C 1.36941 * 119.99858 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99799 * 359.97438 * 15 14 13 17 17 C 1.38807 * 119.99787 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00270 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99624 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47157 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47116 * 120.00231 * 19 17 15 22 22 H 1.48507 * 109.46533 * 239.99818 * 19 17 15 23 23 C 1.54620 * 102.91199 * 322.86927 * 11 10 9 24 24 H 1.09006 * 110.32716 * 262.81061 * 23 11 10 25 25 C 1.53000 * 110.41380 * 140.63483 * 23 11 10 26 26 C 1.47484 * 127.03381 * 0.02996 * 9 7 4 27 27 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 28 28 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 29 29 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46716 * 240.00370 * 2 1 3 31 31 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 33 33 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 34 34 H 1.09000 * 109.46986 * 179.97438 * 6 4 2 35 35 H 1.09002 * 109.47075 * 299.99262 * 6 4 2 36 36 H 1.08996 * 109.47407 * 60.00219 * 6 4 2 37 37 H 1.09002 * 110.66903 * 337.77835 * 10 9 7 38 38 H 1.09003 * 110.66008 * 100.89214 * 10 9 7 39 39 H 1.08999 * 109.47046 * 48.64647 * 13 11 10 40 40 H 1.08991 * 109.47153 * 168.65254 * 13 11 10 41 41 H 0.96995 * 120.00229 * 359.97438 * 14 13 11 42 42 H 0.97000 * 120.00059 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.47140 * 302.87921 * 25 23 11 44 44 H 1.09005 * 109.46957 * 62.87186 * 25 23 11 45 45 H 1.08992 * 109.47420 * 182.87636 * 25 23 11 46 46 H 1.09000 * 109.91216 * 273.87346 * 26 9 7 47 47 H 1.08996 * 109.91336 * 35.15247 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 3.5701 -0.7218 1.2487 7 6 1.5377 -2.1421 1.2491 8 8 0.8407 -2.5388 0.3393 9 7 1.8638 -2.9722 2.2597 10 6 1.4543 -4.3866 2.4196 11 6 1.1758 -4.5104 3.9353 12 1 0.1830 -4.1295 4.1747 13 6 1.3255 -5.9593 4.4035 14 7 0.2081 -6.7561 3.8907 15 6 0.1285 -8.0915 4.1832 16 1 0.8896 -8.5574 4.7915 17 6 -0.9305 -8.8463 3.6978 18 7 -1.8583 -8.2784 2.9570 19 14 -1.0395 -10.6679 4.0974 20 1 0.1182 -11.0597 4.9409 21 1 -2.3016 -10.9390 4.8313 22 1 -1.0213 -11.4530 2.8370 23 6 2.2709 -3.6166 4.5619 24 1 3.1181 -4.2236 4.8815 25 6 1.7049 -2.8301 5.7459 26 6 2.6958 -2.6560 3.4356 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 3.9335 -1.2353 2.1389 35 1 3.9330 -1.2360 0.3587 36 1 3.9338 0.3057 1.2486 37 1 0.5512 -4.5931 1.8453 38 1 2.2614 -5.0565 2.1230 39 1 2.2644 -6.3670 4.0288 40 1 1.3246 -5.9910 5.4929 41 1 -0.4757 -6.3376 3.3447 42 1 -2.5986 -8.8058 2.6181 43 1 0.8520 -2.2378 5.4143 44 1 1.3851 -3.5239 6.5234 45 1 2.4742 -2.1682 6.1435 46 1 3.7486 -2.8065 3.1968 47 1 2.5261 -1.6244 3.7438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106721429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:45 Heat of formation + Delta-G solvation = -43.488644 kcal Electronic energy + Delta-G solvation = -23259.700160 eV Core-core repulsion = 20055.980236 eV Total energy + Delta-G solvation = -3203.719924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.39087 -38.33422 -36.02474 -34.67781 -32.93627 -31.44965 -30.93234 -28.90595 -27.38228 -26.53793 -25.51077 -24.23336 -23.03035 -21.24192 -20.55228 -19.87737 -18.94348 -17.23861 -16.85816 -16.11038 -15.42811 -14.89600 -14.59025 -14.40952 -14.30790 -14.02122 -13.65473 -13.27752 -13.12823 -13.08872 -12.80688 -12.53031 -12.36061 -12.25006 -12.20179 -11.86427 -11.85359 -11.58592 -11.26062 -11.10211 -11.05423 -10.85961 -10.81221 -10.67680 -10.51285 -10.45135 -10.31822 -9.97329 -9.66187 -9.40582 -8.86907 -8.50990 -6.90765 -5.73966 -3.03411 2.75314 3.06847 3.44993 3.50093 3.52796 4.38080 4.50507 4.59485 4.60557 4.72213 4.83640 4.90673 5.05839 5.14110 5.27067 5.29322 5.37427 5.43218 5.51763 5.52797 5.54914 5.60019 5.61559 5.69052 5.74523 5.79230 5.81261 5.83542 5.96988 5.99154 6.05572 6.10013 6.15315 6.20284 6.23734 6.28185 6.42229 6.48720 6.54969 6.72840 6.85905 7.70622 7.71915 8.31530 8.44154 9.55431 10.12842 10.47104 11.48709 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.003684 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.602530 B = 7598.018112 C = 8362.656269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.075 4.075 3 C -0.148 4.148 4 C -0.102 4.102 5 H 0.093 0.907 6 C -0.152 4.152 7 C 0.533 3.467 8 O -0.534 6.534 9 N -0.620 5.620 10 C 0.114 3.886 11 C -0.102 4.102 12 H 0.082 0.918 13 C 0.165 3.835 14 N -0.733 5.733 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.931 5.931 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.102 4.102 24 H 0.087 0.913 25 C -0.141 4.141 26 C 0.105 3.895 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.021 0.979 40 H 0.023 0.977 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.864 20.098 0.153 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.094 4.094 3 C -0.205 4.205 4 C -0.123 4.123 5 H 0.111 0.889 6 C -0.209 4.209 7 C 0.322 3.678 8 O -0.411 6.411 9 N -0.354 5.354 10 C -0.008 4.008 11 C -0.121 4.121 12 H 0.101 0.899 13 C 0.037 3.963 14 N -0.377 5.377 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.122 4.122 24 H 0.105 0.895 25 C -0.198 4.198 26 C -0.018 4.018 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.510 19.791 -0.359 22.897 hybrid contribution -0.322 -0.915 0.132 0.979 sum 11.188 18.876 -0.227 21.944 Atomic orbital electron populations 1.22082 0.94624 1.04324 1.00717 1.20895 0.96641 0.95121 0.96767 1.21920 1.00942 0.95875 1.01812 1.21334 0.97313 0.92848 1.00841 0.88897 1.21962 0.93240 1.02793 1.02942 1.20278 0.79921 0.86917 0.80729 1.90660 1.38081 1.76983 1.35378 1.48896 1.51233 1.13137 1.22154 1.22482 1.01347 0.80446 0.96522 1.22504 0.98808 0.96875 0.93940 0.89924 1.20620 0.92023 0.87363 0.96264 1.42386 1.26243 1.06904 1.62204 1.19249 1.06364 0.85241 1.26322 0.91145 1.24753 0.97536 0.98170 1.00498 1.69673 1.13779 1.35112 1.39379 0.86129 0.77282 0.85403 0.77435 1.20574 1.21890 1.21866 1.22116 0.99121 0.96298 0.94629 0.89488 1.21829 1.00536 0.99865 0.97600 1.22282 0.94546 0.99388 0.85583 0.93600 0.93123 0.89666 0.90633 0.92465 0.92537 0.92758 0.91627 0.92149 0.91298 0.89408 0.90917 0.96146 0.95951 0.78210 0.93528 0.92677 0.91860 0.92783 0.91526 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.87 37.16 0.33 -1.57 16 2 C -0.08 -0.80 2.15 -90.63 -0.19 -0.99 16 3 C -0.15 -1.16 8.84 37.15 0.33 -0.83 16 4 C -0.10 -1.07 1.69 -91.77 -0.16 -1.23 16 5 H 0.09 0.87 7.91 -51.93 -0.41 0.46 16 6 C -0.15 -1.27 8.66 37.16 0.32 -0.94 16 7 C 0.53 7.82 6.96 -10.98 -0.08 7.75 16 8 O -0.53 -9.95 13.87 5.56 0.08 -9.88 16 9 N -0.62 -8.67 3.29 -169.98 -0.56 -9.23 16 10 C 0.11 1.89 6.44 -2.31 -0.01 1.88 16 11 C -0.10 -1.60 2.60 -88.93 -0.23 -1.83 16 12 H 0.08 1.42 7.86 -51.93 -0.41 1.01 16 13 C 0.17 3.22 5.59 -4.04 -0.02 3.19 16 14 N -0.73 -18.56 5.52 -59.91 -0.33 -18.89 16 15 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 16 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.65 13.06 55.49 0.72 -27.92 16 19 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 C -0.10 -1.18 3.17 -89.24 -0.28 -1.46 16 24 H 0.09 0.95 7.85 -51.93 -0.41 0.54 16 25 C -0.14 -1.43 8.90 37.16 0.33 -1.10 16 26 C 0.11 1.10 4.86 -2.98 -0.01 1.09 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 1.29 5.51 -51.93 -0.29 1.00 16 30 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.50 5.12 -51.93 -0.27 0.24 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.45 6.43 -51.93 -0.33 0.12 16 37 H 0.09 1.74 7.85 -51.93 -0.41 1.33 16 38 H 0.07 1.22 7.95 -51.93 -0.41 0.81 16 39 H 0.02 0.40 8.00 -51.93 -0.42 -0.01 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.38 10.37 7.67 -40.82 -0.31 10.06 16 42 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.61 7.22 -51.93 -0.37 0.23 16 47 H 0.07 0.63 6.92 -51.93 -0.36 0.27 16 LS Contribution 361.05 15.07 5.44 5.44 Total: -1.00 -32.36 361.05 -8.10 -40.46 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.50 Total: 5.88 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 0.07 Total: -3.46 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.16 Total: -56.05 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.36 -8.10 -40.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106721429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.029 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds