Wall clock time and date at job start Tue Mar 31 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46872 * 2 1 4 4 C 1.52997 * 109.47017 * 119.99341 * 2 1 3 5 5 H 1.08990 * 109.47844 * 300.00330 * 4 2 1 6 6 C 1.53004 * 109.47040 * 60.00331 * 4 2 1 7 7 C 1.50702 * 109.46997 * 180.02562 * 4 2 1 8 8 O 1.21284 * 120.00010 * 324.50859 * 7 4 2 9 9 N 1.34777 * 119.99855 * 144.50844 * 7 4 2 10 10 C 1.47429 * 125.64895 * 174.89100 * 9 7 4 11 11 C 1.54903 * 104.83227 * 204.09621 * 10 9 7 12 12 H 1.09001 * 111.00845 * 81.06895 * 11 10 9 13 13 C 1.53005 * 111.00268 * 204.87978 * 11 10 9 14 14 N 1.46503 * 109.46871 * 293.54578 * 13 11 10 15 15 C 1.36933 * 119.99794 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00304 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99870 * 180.02562 * 15 14 13 18 18 N 1.31610 * 119.99956 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99805 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47308 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46977 * 119.99740 * 19 17 15 22 22 H 1.48502 * 109.47248 * 239.99437 * 19 17 15 23 23 C 1.55161 * 101.58309 * 322.98825 * 11 10 9 24 24 H 1.08995 * 110.71868 * 277.14490 * 23 11 10 25 25 C 1.52993 * 110.71726 * 153.86708 * 23 11 10 26 26 C 1.47020 * 125.64990 * 354.85079 * 9 7 4 27 27 H 1.08997 * 109.47426 * 300.00440 * 1 2 3 28 28 H 1.09004 * 109.46886 * 60.00337 * 1 2 3 29 29 H 1.09005 * 109.46733 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47426 * 239.99560 * 2 1 3 31 31 H 1.09004 * 109.47089 * 299.99538 * 3 2 1 32 32 H 1.08997 * 109.47454 * 59.99577 * 3 2 1 33 33 H 1.08998 * 109.47172 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47484 * 174.28971 * 6 4 2 35 35 H 1.08989 * 109.47100 * 294.29859 * 6 4 2 36 36 H 1.09005 * 109.46930 * 54.29547 * 6 4 2 37 37 H 1.09004 * 110.36415 * 322.93298 * 10 9 7 38 38 H 1.08997 * 110.36596 * 85.25308 * 10 9 7 39 39 H 1.09000 * 109.46845 * 53.53930 * 13 11 10 40 40 H 1.09000 * 109.47532 * 173.54500 * 13 11 10 41 41 H 0.96998 * 120.00434 * 359.97438 * 14 13 11 42 42 H 0.97003 * 120.00244 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.47394 * 305.02173 * 25 23 11 44 44 H 1.08995 * 109.47371 * 65.02916 * 25 23 11 45 45 H 1.09007 * 109.46783 * 185.02254 * 25 23 11 46 46 H 1.08996 * 109.88345 * 298.39728 * 26 9 7 47 47 H 1.09003 * 109.87982 * 59.55986 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6767 -0.2073 2.1392 6 6 1.5300 -2.1636 1.2494 7 6 3.5470 -0.7205 1.2496 8 8 4.1537 -0.8208 0.2042 9 7 4.2205 -0.6086 2.4116 10 6 5.6836 -0.7002 2.5690 11 6 5.8979 -1.1278 4.0423 12 1 5.7648 -2.2032 4.1604 13 6 7.2750 -0.6901 4.5456 14 7 8.3155 -1.4260 3.8230 15 6 9.6360 -1.1999 4.1062 16 1 9.9105 -0.4788 4.8619 17 6 10.6219 -1.8968 3.4211 18 7 10.2875 -2.7752 2.4999 19 14 12.4233 -1.5878 3.8069 20 1 12.5320 -0.5602 4.8735 21 1 13.0542 -2.8502 4.2692 22 1 13.1160 -1.1071 2.5845 23 6 4.7675 -0.3451 4.7615 24 1 5.0773 0.6799 4.9647 25 6 4.3556 -1.0541 6.0532 26 6 3.6182 -0.3742 3.7321 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.9743 -2.7061 2.0839 35 1 0.4449 -2.1654 1.3514 36 1 1.8076 -2.6472 0.3127 37 1 6.0915 -1.4515 1.8927 38 1 6.1464 0.2692 2.3841 39 1 7.4011 0.3790 4.3750 40 1 7.3557 -0.8999 5.6121 41 1 8.0690 -2.0739 3.1445 42 1 10.9764 -3.2624 2.0214 43 1 4.0806 -2.0849 5.8301 44 1 5.1895 -1.0441 6.7550 45 1 3.5030 -0.5380 6.4948 46 1 3.0930 0.5809 3.7357 47 1 2.9258 -1.1812 3.9722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106721430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:48 Heat of formation + Delta-G solvation = -50.933382 kcal Electronic energy + Delta-G solvation = -23204.703574 eV Core-core repulsion = 20000.660822 eV Total energy + Delta-G solvation = -3204.042752 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.34033 -38.30300 -36.09896 -34.64644 -32.87768 -31.42200 -30.97449 -29.07957 -27.49968 -26.37628 -25.64481 -24.14497 -23.01346 -21.23447 -20.57865 -19.90312 -18.78375 -17.32962 -16.85015 -16.08555 -15.67939 -14.73597 -14.63681 -14.35901 -14.12949 -14.04054 -13.60593 -13.42804 -13.17328 -13.06258 -12.68967 -12.54667 -12.44344 -12.33506 -12.14381 -12.09905 -11.95841 -11.63033 -11.31766 -11.15959 -11.08348 -10.86735 -10.85184 -10.72985 -10.54787 -10.43738 -10.34082 -9.96985 -9.65419 -9.51061 -8.86669 -8.47271 -6.90989 -5.74082 -3.03437 2.76630 3.09727 3.45153 3.50287 3.52959 4.38082 4.48270 4.54582 4.59818 4.71789 4.82443 4.89994 5.04609 5.15525 5.25023 5.31299 5.35559 5.43738 5.46160 5.49341 5.54799 5.59197 5.60935 5.65371 5.68075 5.74233 5.75136 5.83574 5.91099 6.01146 6.02458 6.06604 6.15353 6.18831 6.20759 6.22992 6.33625 6.41380 6.52231 6.70804 6.84754 7.68186 7.71976 8.32406 8.43998 9.55337 10.12488 10.46794 11.48645 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.003684 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.874391 B = 7598.225870 C = 8285.232489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.151 4.151 4 C -0.102 4.102 5 H 0.086 0.914 6 C -0.141 4.141 7 C 0.531 3.469 8 O -0.537 6.537 9 N -0.619 5.619 10 C 0.116 3.884 11 C -0.100 4.100 12 H 0.084 0.916 13 C 0.166 3.834 14 N -0.733 5.733 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.099 4.099 24 H 0.086 0.914 25 C -0.139 4.139 26 C 0.106 3.894 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.021 0.979 40 H 0.024 0.976 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.684 5.511 2.022 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.208 4.208 4 C -0.123 4.123 5 H 0.104 0.896 6 C -0.198 4.198 7 C 0.320 3.680 8 O -0.414 6.414 9 N -0.353 5.353 10 C -0.006 4.006 11 C -0.120 4.120 12 H 0.102 0.898 13 C 0.038 3.962 14 N -0.377 5.377 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.118 4.118 24 H 0.105 0.895 25 C -0.197 4.197 26 C -0.017 4.017 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.038 0.962 40 H 0.042 0.958 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.248 5.524 1.453 22.970 hybrid contribution 1.013 -0.053 0.050 1.015 sum -21.235 5.471 1.504 21.980 Atomic orbital electron populations 1.21888 0.94813 1.01907 1.01783 1.21004 0.95396 0.96276 0.97388 1.21878 1.01907 0.95552 1.01447 1.21367 0.91748 0.98750 1.00467 0.89595 1.21740 1.01250 0.93880 1.02942 1.20276 0.89542 0.75939 0.82274 1.90715 1.70294 1.49736 1.30658 1.48630 1.08508 1.71465 1.06735 1.22298 0.78957 1.02204 0.97147 1.22660 0.95606 1.00331 0.93398 0.89755 1.20577 0.85571 0.95003 0.95048 1.42371 1.01588 1.48218 1.45549 1.19251 0.82778 1.18464 1.16687 0.91132 1.24754 0.97996 0.99254 0.98948 1.69669 1.32017 1.28930 1.27338 0.86125 0.85455 0.77261 0.77383 1.20568 1.21888 1.21862 1.22226 0.94380 1.00799 0.94414 0.89518 1.21738 1.01414 1.00111 0.96418 1.22122 0.96359 1.00579 0.82677 0.92740 0.92485 0.92288 0.89925 0.92491 0.93015 0.92150 0.92271 0.91298 0.91711 0.90025 0.91222 0.96156 0.95827 0.78217 0.93527 0.92454 0.91658 0.92708 0.91774 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.84 37.16 0.33 -0.78 16 2 C -0.08 -0.84 2.19 -90.62 -0.20 -1.04 16 3 C -0.15 -1.60 8.93 37.16 0.33 -1.26 16 4 C -0.10 -1.10 2.03 -91.77 -0.19 -1.28 16 5 H 0.09 0.77 6.97 -51.93 -0.36 0.41 16 6 C -0.14 -1.33 8.65 37.16 0.32 -1.01 16 7 C 0.53 8.04 5.79 -10.98 -0.06 7.97 16 8 O -0.54 -10.43 16.06 5.55 0.09 -10.34 16 9 N -0.62 -8.97 3.33 -170.52 -0.57 -9.54 16 10 C 0.12 1.99 6.06 -2.53 -0.02 1.98 16 11 C -0.10 -1.58 2.55 -88.47 -0.23 -1.81 16 12 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 13 C 0.17 3.24 5.71 -4.04 -0.02 3.22 16 14 N -0.73 -18.59 5.45 -59.90 -0.33 -18.92 16 15 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 19 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 C -0.10 -1.15 3.02 -88.79 -0.27 -1.42 16 24 H 0.09 0.99 8.04 -51.93 -0.42 0.57 16 25 C -0.14 -1.36 9.13 37.15 0.34 -1.03 16 26 C 0.11 1.15 5.54 -3.06 -0.02 1.13 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 30 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.80 6.84 -51.93 -0.36 0.45 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.49 6.75 -51.93 -0.35 0.14 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 38 H 0.07 1.27 8.00 -51.93 -0.42 0.86 16 39 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.38 10.36 7.53 -40.82 -0.31 10.05 16 42 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.59 8.00 -51.93 -0.42 0.17 16 47 H 0.07 0.63 7.82 -51.93 -0.41 0.22 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -32.81 368.85 -8.28 -41.08 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.81 Total: 5.19 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 0.08 Total: -2.75 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.17 Total: -56.40 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.81 -8.28 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106721430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.851 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds