Wall clock time and date at job start Tue Mar 31 2020 06:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46844 * 2 1 4 4 C 1.52999 * 109.47208 * 119.99823 * 2 1 3 5 5 C 1.52999 * 109.46844 * 65.00352 * 4 2 1 6 6 C 1.50700 * 109.47110 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99893 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00066 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99781 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.49828 * 35.00019 * 9 8 6 11 11 C 1.53045 * 109.49583 * 155.06441 * 9 8 6 12 12 C 1.53039 * 109.53718 * 58.58395 * 11 9 8 13 13 C 1.53196 * 109.31405 * 61.36648 * 12 11 9 14 14 H 1.09002 * 109.58299 * 65.14623 * 13 12 11 15 15 C 1.52995 * 109.58526 * 185.43198 * 13 12 11 16 16 N 1.46924 * 108.77383 * 305.36177 * 13 12 11 17 17 C 1.36932 * 120.63137 * 233.62960 * 16 13 12 18 18 H 1.07999 * 120.00385 * 28.63295 * 17 16 13 19 19 C 1.38818 * 119.99846 * 208.63099 * 17 16 13 20 20 N 1.31622 * 120.00022 * 14.67817 * 19 17 16 21 21 Si 1.86804 * 119.99978 * 194.67222 * 19 17 16 22 22 H 1.48500 * 109.47087 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47017 * 120.00370 * 21 19 17 24 24 H 1.48501 * 109.47237 * 240.00361 * 21 19 17 25 25 C 1.47003 * 118.75454 * 53.61009 * 16 13 12 26 26 H 1.08995 * 109.47347 * 299.99688 * 1 2 3 27 27 H 1.08997 * 109.47142 * 60.00329 * 1 2 3 28 28 H 1.09009 * 109.46612 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47077 * 239.99916 * 2 1 3 30 30 H 1.08998 * 109.47182 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47497 * 299.99823 * 3 2 1 32 32 H 1.09000 * 109.47352 * 60.00084 * 3 2 1 33 33 H 1.09000 * 109.46908 * 305.00409 * 4 2 1 34 34 H 1.08999 * 109.47223 * 185.00071 * 4 2 1 35 35 H 1.09003 * 109.47458 * 299.99948 * 5 4 2 36 36 H 1.08993 * 109.47408 * 59.99876 * 5 4 2 37 37 H 0.97004 * 120.00077 * 359.97438 * 8 6 5 38 38 H 1.08998 * 109.46111 * 178.60643 * 11 9 8 39 39 H 1.08998 * 109.45818 * 298.56375 * 11 9 8 40 40 H 1.08998 * 109.49734 * 181.31733 * 12 11 9 41 41 H 1.09000 * 109.49977 * 301.38104 * 12 11 9 42 42 H 1.09004 * 109.47196 * 60.00173 * 15 13 12 43 43 H 1.09005 * 109.46902 * 179.97438 * 15 13 12 44 44 H 1.08998 * 109.47804 * 299.99765 * 15 13 12 45 45 H 0.97000 * 120.00003 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.62952 * 186.61921 * 25 16 13 47 47 H 1.08999 * 109.58183 * 66.16788 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 6 2.1371 -2.9057 2.4187 7 8 2.7577 -2.2932 3.2616 8 7 1.8971 -4.2218 2.5821 9 6 2.3854 -4.9124 3.7784 10 1 2.3380 -4.2374 4.6330 11 6 1.5150 -6.1417 4.0496 12 6 1.5541 -7.0741 2.8366 13 6 2.9939 -7.5429 2.6041 14 1 3.3197 -8.1540 3.4458 15 6 3.0638 -8.3652 1.3158 16 7 3.8621 -6.3634 2.4866 17 6 4.6810 -6.2052 1.4006 18 1 4.4041 -6.6333 0.4485 19 6 5.8671 -5.4945 1.5234 20 7 6.3507 -5.2224 2.7169 21 14 6.7769 -4.9244 -0.0053 22 1 6.0300 -5.3538 -1.2148 23 1 6.8875 -3.4436 0.0079 24 1 8.1362 -5.5221 -0.0242 25 6 3.8349 -5.3559 3.5568 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6054 -0.2617 2.1369 34 1 3.1263 -0.6443 1.2952 35 1 0.5490 -2.2724 1.1420 36 1 2.0699 -2.6549 0.3002 37 1 1.4010 -4.7118 1.9078 38 1 1.8938 -6.6689 4.9252 39 1 0.4878 -5.8262 4.2321 40 1 0.9156 -7.9380 3.0211 41 1 1.1981 -6.5401 1.9556 42 1 2.7425 -7.7508 0.4747 43 1 4.0890 -8.6973 1.1519 44 1 2.4099 -9.2329 1.4025 45 1 7.1797 -4.7261 2.8027 46 1 4.4395 -4.4968 3.2664 47 1 4.2291 -5.7888 4.4762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131788967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:54 Heat of formation + Delta-G solvation = -46.065903 kcal Electronic energy + Delta-G solvation = -23939.915069 eV Core-core repulsion = 20736.083386 eV Total energy + Delta-G solvation = -3203.831683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.46230 -37.72664 -36.34118 -34.00955 -32.69657 -31.27454 -30.08707 -29.73068 -27.20082 -26.24291 -25.03316 -24.07110 -22.13378 -20.65595 -20.16308 -19.70864 -18.66204 -16.74328 -16.20177 -15.59044 -15.36778 -14.73544 -14.54361 -14.09423 -13.91797 -13.74509 -13.48530 -13.18139 -13.12211 -12.73970 -12.48900 -12.35439 -12.20866 -11.82772 -11.68323 -11.22066 -11.16669 -11.14329 -10.94213 -10.88042 -10.70064 -10.65940 -10.57755 -10.42977 -10.35328 -10.28789 -9.92799 -9.50515 -9.41497 -9.12182 -8.42181 -8.24736 -6.57091 -5.71258 -3.15453 3.33193 3.39441 3.45793 3.48458 3.88684 4.52334 4.87591 4.91595 4.94921 5.32113 5.34307 5.38705 5.43169 5.48601 5.53781 5.55582 5.59685 5.63293 5.72335 5.77705 5.86119 5.93768 6.04684 6.09187 6.11821 6.14687 6.18481 6.24370 6.35269 6.36923 6.44841 6.47049 6.53608 6.57258 6.64078 6.75391 6.96217 7.06791 7.16587 7.47398 7.76525 7.86986 8.24151 8.52625 8.95340 9.26933 9.91689 10.47566 11.36394 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.006147 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.826790 B = 4554.025825 C = 5704.944597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.097 4.097 5 C -0.141 4.141 6 C 0.511 3.489 7 O -0.550 6.550 8 N -0.703 5.703 9 C 0.118 3.882 10 H 0.073 0.927 11 C -0.118 4.118 12 C -0.130 4.130 13 C 0.165 3.835 14 H 0.024 0.976 15 C -0.135 4.135 16 N -0.583 5.583 17 C -0.248 4.248 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.900 5.900 21 Si 0.895 3.105 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.161 3.839 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.393 0.607 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.037 0.963 45 H 0.252 0.748 46 H 0.099 0.901 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.197 4.200 -3.505 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.135 4.135 5 C -0.181 4.181 6 C 0.297 3.703 7 O -0.428 6.428 8 N -0.354 5.354 9 C 0.012 3.988 10 H 0.091 0.909 11 C -0.156 4.156 12 C -0.169 4.169 13 C 0.059 3.941 14 H 0.041 0.959 15 C -0.193 4.193 16 N -0.306 5.306 17 C -0.378 4.378 18 H 0.086 0.914 19 C -0.194 4.194 20 N -0.544 5.544 21 Si 0.725 3.275 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.035 3.965 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.228 0.772 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.117 0.883 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -12.582 4.701 -2.858 13.732 hybrid contribution 0.383 -0.011 -1.066 1.133 sum -12.198 4.690 -3.925 13.646 Atomic orbital electron populations 1.21900 0.95541 1.01715 1.01390 1.21161 0.95651 0.96283 0.98714 1.21818 1.01200 0.95981 1.01349 1.21366 1.01989 0.92870 0.97284 1.21707 1.01985 0.96905 0.97499 1.20498 0.79671 0.82293 0.87828 1.90661 1.40828 1.66553 1.44805 1.45874 1.56881 1.08767 1.23831 1.21735 0.97853 0.92224 0.86995 0.90910 1.21685 0.98593 0.96450 0.98907 1.22060 0.99305 0.98155 0.97387 1.20449 0.89144 0.89035 0.95518 0.95882 1.21793 1.01380 0.97997 0.98125 1.44071 1.45968 1.17882 1.22716 1.19130 0.98186 1.31982 0.88485 0.91410 1.25053 0.96274 1.02148 0.95974 1.69989 1.20732 1.42867 1.20804 0.86337 0.79684 0.78481 0.82961 1.20375 1.21632 1.21812 1.21218 0.90268 0.94368 0.90662 0.92778 0.93084 0.92497 0.91200 0.92597 0.93020 0.92753 0.91470 0.91112 0.89642 0.89127 0.77222 0.91295 0.93167 0.92986 0.92673 0.92958 0.92119 0.94437 0.93754 0.88288 0.95972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.95 37.16 0.33 -1.09 16 2 C -0.10 -1.11 2.92 -90.62 -0.26 -1.38 16 3 C -0.15 -1.52 9.19 37.16 0.34 -1.18 16 4 C -0.10 -1.36 3.97 -26.73 -0.11 -1.47 16 5 C -0.14 -2.01 5.45 -27.88 -0.15 -2.16 16 6 C 0.51 9.59 7.80 -10.98 -0.09 9.51 16 7 O -0.55 -12.53 15.65 5.56 0.09 -12.45 16 8 N -0.70 -12.59 4.92 -53.68 -0.26 -12.85 16 9 C 0.12 2.28 2.81 -67.80 -0.19 2.09 16 10 H 0.07 1.47 7.58 -51.93 -0.39 1.08 16 11 C -0.12 -1.89 5.59 -26.69 -0.15 -2.04 16 12 C -0.13 -2.07 5.20 -26.61 -0.14 -2.20 16 13 C 0.17 3.26 3.49 -67.60 -0.24 3.02 16 14 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 15 C -0.14 -2.44 7.95 37.16 0.30 -2.15 16 16 N -0.58 -13.89 2.91 -164.72 -0.48 -14.37 16 17 C -0.25 -6.54 8.63 -15.06 -0.13 -6.67 16 18 H 0.07 1.75 6.19 -52.49 -0.33 1.42 16 19 C 0.00 0.12 4.97 -17.43 -0.09 0.03 16 20 N -0.90 -26.64 11.09 55.49 0.62 -26.03 16 21 Si 0.90 22.01 29.58 -169.99 -5.03 16.98 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 C 0.16 3.90 4.89 -3.67 -0.02 3.88 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.52 6.57 -51.92 -0.34 0.18 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.07 1.16 8.10 -51.93 -0.42 0.73 16 35 H 0.09 0.98 6.57 -51.93 -0.34 0.64 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.39 6.24 6.77 -40.82 -0.28 5.96 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.86 6.40 -51.93 -0.33 0.52 16 42 H 0.05 0.94 7.41 -51.93 -0.38 0.56 16 43 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.10 2.83 6.02 -51.93 -0.31 2.51 16 47 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 358.81 15.07 5.41 5.41 Total: -1.00 -30.97 358.81 -8.83 -39.80 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -8.58 Total: 5.31 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -0.59 Total: -1.80 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.13 Total: -53.25 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.97 -8.83 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131788967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.266 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds