Wall clock time and date at job start Tue Mar 31 2020 06:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47422 * 2 1 4 4 C 1.53003 * 109.47385 * 120.00334 * 2 1 3 5 5 C 1.52998 * 109.47036 * 64.99497 * 4 2 1 6 6 C 1.50707 * 109.46912 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99650 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00078 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00128 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.52515 * 325.08586 * 9 8 6 11 11 C 1.53041 * 109.49940 * 205.00189 * 9 8 6 12 12 C 1.53044 * 109.53917 * 301.41531 * 11 9 8 13 13 C 1.53193 * 109.31249 * 298.63545 * 12 11 9 14 14 H 1.09000 * 109.58457 * 294.70167 * 13 12 11 15 15 C 1.52994 * 109.58478 * 174.42225 * 13 12 11 16 16 N 1.46919 * 108.89401 * 54.56317 * 13 12 11 17 17 C 1.36935 * 120.63384 * 126.45946 * 16 13 12 18 18 H 1.08001 * 119.99758 * 331.66471 * 17 16 13 19 19 C 1.38810 * 120.00225 * 151.65606 * 17 16 13 20 20 N 1.31616 * 120.00488 * 160.60051 * 19 17 16 21 21 Si 1.86808 * 120.00031 * 340.60244 * 19 17 16 22 22 H 1.48503 * 109.46669 * 94.81655 * 21 19 17 23 23 H 1.48490 * 109.47106 * 214.81588 * 21 19 17 24 24 H 1.48502 * 109.47048 * 334.82036 * 21 19 17 25 25 C 1.46968 * 118.71452 * 306.64010 * 16 13 12 26 26 H 1.09001 * 109.47461 * 59.99997 * 1 2 3 27 27 H 1.09003 * 109.47385 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47628 * 300.00034 * 1 2 3 29 29 H 1.09008 * 109.47303 * 240.00273 * 2 1 3 30 30 H 1.09000 * 109.47435 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47470 * 300.00151 * 3 2 1 32 32 H 1.08997 * 109.47095 * 59.99712 * 3 2 1 33 33 H 1.09009 * 109.46586 * 304.99827 * 4 2 1 34 34 H 1.08997 * 109.47051 * 185.00058 * 4 2 1 35 35 H 1.08998 * 109.46834 * 60.01017 * 5 4 2 36 36 H 1.08997 * 109.47659 * 300.00189 * 5 4 2 37 37 H 0.97010 * 119.99877 * 0.02562 * 8 6 5 38 38 H 1.08999 * 109.46094 * 181.39199 * 11 9 8 39 39 H 1.09005 * 109.44666 * 61.42760 * 11 9 8 40 40 H 1.08996 * 109.49840 * 178.68182 * 12 11 9 41 41 H 1.09000 * 109.52034 * 58.60152 * 12 11 9 42 42 H 1.08998 * 109.47436 * 60.28485 * 15 13 12 43 43 H 1.09001 * 109.47306 * 300.28176 * 15 13 12 44 44 H 1.09003 * 109.46939 * 180.28404 * 15 13 12 45 45 H 0.96996 * 120.00485 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.46817 * 293.57488 * 25 16 13 47 47 H 1.09002 * 109.59169 * 173.21366 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1879 6 6 2.1370 -2.9058 2.4187 7 8 2.7570 -2.2931 3.2619 8 7 1.8969 -4.2218 2.5822 9 6 2.3853 -4.9125 3.7783 10 1 3.3446 -4.4899 4.0768 11 6 2.5560 -6.4025 3.4739 12 6 1.2165 -6.9897 3.0231 13 6 0.1924 -6.8412 4.1527 14 1 0.4971 -7.4494 5.0044 15 6 -1.1826 -7.2983 3.6618 16 7 0.1278 -5.4293 4.5538 17 6 -1.0703 -4.7670 4.5854 18 1 -1.8706 -5.0668 3.9250 19 6 -1.2563 -3.7104 5.4662 20 7 -2.2210 -2.8401 5.2558 21 14 -0.1374 -3.5235 6.9504 22 1 0.9722 -2.5936 6.6197 23 1 -0.9158 -2.9793 8.0917 24 1 0.4211 -4.8492 7.3193 25 6 1.3745 -4.7405 4.9165 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2951 35 1 2.0698 -2.6550 0.3002 36 1 0.5489 -2.2724 1.1420 37 1 1.4013 -4.7120 1.9075 38 1 2.8957 -6.9199 4.3711 39 1 3.2931 -6.5288 2.6808 40 1 1.3440 -8.0454 2.7841 41 1 0.8639 -6.4567 2.1401 42 1 -1.1314 -8.3444 3.3601 43 1 -1.4854 -6.6890 2.8102 44 1 -1.9107 -7.1871 4.4653 45 1 -2.3512 -2.1020 5.8715 46 1 1.7768 -5.1755 5.8313 47 1 1.1747 -3.6801 5.0706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131788968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:57 Heat of formation + Delta-G solvation = -41.109247 kcal Electronic energy + Delta-G solvation = -24064.073205 eV Core-core repulsion = 20860.456459 eV Total energy + Delta-G solvation = -3203.616746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.65244 -37.94853 -36.33922 -34.16721 -32.71506 -31.37588 -30.67752 -30.05826 -27.08663 -26.45030 -24.95818 -24.12219 -22.66060 -20.73757 -20.20152 -19.70048 -18.88041 -16.81451 -16.44662 -15.65112 -15.40871 -15.11866 -14.57942 -14.33830 -13.95966 -13.83428 -13.58776 -13.49572 -13.00904 -12.85158 -12.66080 -12.27896 -12.08485 -12.05535 -11.74422 -11.62633 -11.49429 -11.26983 -11.16513 -10.97510 -10.65975 -10.53099 -10.51224 -10.39735 -10.38893 -10.27399 -9.92521 -9.67933 -9.34039 -9.23831 -8.67402 -8.34056 -6.87386 -5.89669 -3.26037 3.22239 3.44997 3.54750 3.55720 3.75798 4.60555 4.89435 4.90816 4.96042 4.99828 5.18784 5.27458 5.31212 5.36038 5.47012 5.50571 5.61389 5.69016 5.74318 5.79702 5.82477 5.90142 5.95755 6.00146 6.03249 6.14132 6.17166 6.22262 6.24170 6.26610 6.28632 6.33065 6.42947 6.49514 6.50123 6.52208 6.58169 6.75211 6.95672 7.03942 7.12851 8.00830 8.10384 8.38694 8.82237 8.98657 9.78849 10.15841 11.25706 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.006053 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.370404 B = 4625.074036 C = 5311.870877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.097 4.097 5 C -0.140 4.140 6 C 0.514 3.486 7 O -0.553 6.553 8 N -0.704 5.704 9 C 0.127 3.873 10 H 0.078 0.922 11 C -0.119 4.119 12 C -0.131 4.131 13 C 0.170 3.830 14 H 0.029 0.971 15 C -0.136 4.136 16 N -0.598 5.598 17 C -0.257 4.257 18 H 0.090 0.910 19 C 0.028 3.972 20 N -0.909 5.909 21 Si 0.874 3.126 22 H -0.286 1.286 23 H -0.305 1.305 24 H -0.271 1.271 25 C 0.115 3.885 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.397 0.603 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.039 0.961 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.261 0.739 46 H 0.030 0.970 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.232 -2.271 -11.098 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.135 4.135 5 C -0.180 4.180 6 C 0.301 3.699 7 O -0.432 6.432 8 N -0.355 5.355 9 C 0.021 3.979 10 H 0.096 0.904 11 C -0.157 4.157 12 C -0.171 4.171 13 C 0.063 3.937 14 H 0.046 0.954 15 C -0.193 4.193 16 N -0.322 5.322 17 C -0.385 4.385 18 H 0.108 0.892 19 C -0.171 4.171 20 N -0.552 5.552 21 Si 0.705 3.295 22 H -0.213 1.213 23 H -0.234 1.234 24 H -0.196 1.196 25 C -0.011 4.011 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.232 0.768 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.556 -1.705 -10.422 13.592 hybrid contribution 0.277 -0.029 0.682 0.737 sum 8.833 -1.734 -9.740 13.263 Atomic orbital electron populations 1.21915 0.95057 1.02237 1.01650 1.21135 0.96106 0.96083 0.98169 1.21824 1.00741 0.96173 1.01615 1.21375 1.01185 0.93026 0.97957 1.21705 1.03402 0.96703 0.96226 1.20590 0.79219 0.82035 0.88048 1.90653 1.41735 1.65811 1.44957 1.45843 1.57093 1.09351 1.23242 1.21428 0.97849 0.91516 0.87114 0.90418 1.21690 0.97701 0.94919 1.01359 1.22062 0.95747 0.99390 0.99876 1.20460 0.93660 0.85963 0.93583 0.95375 1.21804 0.97497 0.98161 1.01881 1.44380 1.02726 1.05720 1.79394 1.18843 0.91229 1.12049 1.16361 0.89235 1.25249 0.96383 0.97387 0.98072 1.69801 1.33843 1.13984 1.37552 0.87054 0.80077 0.78038 0.84377 1.21329 1.23357 1.19594 1.21760 0.87113 0.98460 0.93813 0.93130 0.92195 0.92364 0.91536 0.92888 0.92983 0.92571 0.91026 0.91641 0.89778 0.88430 0.76772 0.91127 0.92475 0.92432 0.92207 0.94214 0.92526 0.91790 0.92935 0.95220 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.95 37.15 0.33 -1.47 16 2 C -0.10 -1.11 2.92 -90.63 -0.26 -1.37 16 3 C -0.15 -1.54 9.19 37.16 0.34 -1.20 16 4 C -0.10 -1.39 3.97 -26.73 -0.11 -1.49 16 5 C -0.14 -2.03 5.46 -27.88 -0.15 -2.18 16 6 C 0.51 9.54 7.80 -10.99 -0.09 9.45 16 7 O -0.55 -12.38 15.64 5.56 0.09 -12.29 16 8 N -0.70 -12.21 4.92 -53.69 -0.26 -12.47 16 9 C 0.13 2.31 2.81 -67.81 -0.19 2.12 16 10 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 11 C -0.12 -1.72 5.59 -26.69 -0.15 -1.87 16 12 C -0.13 -1.93 5.21 -26.61 -0.14 -2.07 16 13 C 0.17 3.13 3.49 -67.61 -0.24 2.89 16 14 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 15 C -0.14 -2.37 7.94 37.15 0.29 -2.08 16 16 N -0.60 -13.58 2.69 -164.75 -0.44 -14.02 16 17 C -0.26 -6.88 9.07 -15.06 -0.14 -7.02 16 18 H 0.09 2.52 6.36 -52.49 -0.33 2.18 16 19 C 0.03 0.81 5.25 -17.43 -0.09 0.72 16 20 N -0.91 -27.90 13.97 55.49 0.78 -27.12 16 21 Si 0.87 23.31 24.36 -169.99 -4.14 19.17 16 22 H -0.29 -7.82 6.72 56.52 0.38 -7.44 16 23 H -0.31 -8.27 7.11 56.52 0.40 -7.87 16 24 H -0.27 -7.01 6.44 56.52 0.36 -6.64 16 25 C 0.12 2.58 3.79 -3.69 -0.01 2.56 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.73 6.56 -51.93 -0.34 0.39 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.20 8.10 -51.92 -0.42 0.78 16 34 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 1.44 6.56 -51.93 -0.34 1.10 16 37 H 0.40 6.09 6.77 -40.82 -0.28 5.81 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.87 6.40 -51.93 -0.33 0.54 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.02 7.43 -51.93 -0.39 0.64 16 44 H 0.06 1.24 7.63 -51.93 -0.40 0.85 16 45 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 46 H 0.03 0.67 6.94 -51.93 -0.36 0.31 16 47 H 0.08 2.08 4.62 -51.93 -0.24 1.84 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -32.18 352.34 -7.78 -39.95 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.51 Total: 4.47 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -0.60 Total: -3.01 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.07 Total: -53.62 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.14 Total: 19.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.18 -7.78 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131788968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.154 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds