Wall clock time and date at job start Tue Mar 31 2020 06:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47422 * 2 1 4 4 C 1.53003 * 109.47385 * 120.00334 * 2 1 3 5 5 C 1.52998 * 109.47036 * 64.99497 * 4 2 1 6 6 C 1.50707 * 109.46912 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99650 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00078 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00128 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.52515 * 325.08586 * 9 8 6 11 11 C 1.53041 * 109.49940 * 205.00189 * 9 8 6 12 12 C 1.53044 * 109.53917 * 301.41531 * 11 9 8 13 13 C 1.53193 * 109.31249 * 298.63545 * 12 11 9 14 14 H 1.09000 * 109.58457 * 294.70167 * 13 12 11 15 15 C 1.52994 * 109.58478 * 174.42225 * 13 12 11 16 16 N 1.46919 * 108.89401 * 54.56317 * 13 12 11 17 17 C 1.36935 * 120.63384 * 126.45946 * 16 13 12 18 18 H 1.08001 * 119.99758 * 331.66471 * 17 16 13 19 19 C 1.38810 * 120.00225 * 151.65606 * 17 16 13 20 20 N 1.31616 * 120.00488 * 160.60051 * 19 17 16 21 21 Si 1.86808 * 120.00031 * 340.60244 * 19 17 16 22 22 H 1.48503 * 109.46669 * 94.81655 * 21 19 17 23 23 H 1.48490 * 109.47106 * 214.81588 * 21 19 17 24 24 H 1.48502 * 109.47048 * 334.82036 * 21 19 17 25 25 C 1.46968 * 118.71452 * 306.64010 * 16 13 12 26 26 H 1.09001 * 109.47461 * 59.99997 * 1 2 3 27 27 H 1.09003 * 109.47385 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47628 * 300.00034 * 1 2 3 29 29 H 1.09008 * 109.47303 * 240.00273 * 2 1 3 30 30 H 1.09000 * 109.47435 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47470 * 300.00151 * 3 2 1 32 32 H 1.08997 * 109.47095 * 59.99712 * 3 2 1 33 33 H 1.09009 * 109.46586 * 304.99827 * 4 2 1 34 34 H 1.08997 * 109.47051 * 185.00058 * 4 2 1 35 35 H 1.08998 * 109.46834 * 60.01017 * 5 4 2 36 36 H 1.08997 * 109.47659 * 300.00189 * 5 4 2 37 37 H 0.97010 * 119.99877 * 0.02562 * 8 6 5 38 38 H 1.08999 * 109.46094 * 181.39199 * 11 9 8 39 39 H 1.09005 * 109.44666 * 61.42760 * 11 9 8 40 40 H 1.08996 * 109.49840 * 178.68182 * 12 11 9 41 41 H 1.09000 * 109.52034 * 58.60152 * 12 11 9 42 42 H 1.08998 * 109.47436 * 60.28485 * 15 13 12 43 43 H 1.09001 * 109.47306 * 300.28176 * 15 13 12 44 44 H 1.09003 * 109.46939 * 180.28404 * 15 13 12 45 45 H 0.96996 * 120.00485 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.46817 * 293.57488 * 25 16 13 47 47 H 1.09002 * 109.59169 * 173.21366 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1879 6 6 2.1370 -2.9058 2.4187 7 8 2.7570 -2.2931 3.2619 8 7 1.8969 -4.2218 2.5822 9 6 2.3853 -4.9125 3.7783 10 1 3.3446 -4.4899 4.0768 11 6 2.5560 -6.4025 3.4739 12 6 1.2165 -6.9897 3.0231 13 6 0.1924 -6.8412 4.1527 14 1 0.4971 -7.4494 5.0044 15 6 -1.1826 -7.2983 3.6618 16 7 0.1278 -5.4293 4.5538 17 6 -1.0703 -4.7670 4.5854 18 1 -1.8706 -5.0668 3.9250 19 6 -1.2563 -3.7104 5.4662 20 7 -2.2210 -2.8401 5.2558 21 14 -0.1374 -3.5235 6.9504 22 1 0.9722 -2.5936 6.6197 23 1 -0.9158 -2.9793 8.0917 24 1 0.4211 -4.8492 7.3193 25 6 1.3745 -4.7405 4.9165 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2951 35 1 2.0698 -2.6550 0.3002 36 1 0.5489 -2.2724 1.1420 37 1 1.4013 -4.7120 1.9075 38 1 2.8957 -6.9199 4.3711 39 1 3.2931 -6.5288 2.6808 40 1 1.3440 -8.0454 2.7841 41 1 0.8639 -6.4567 2.1401 42 1 -1.1314 -8.3444 3.3601 43 1 -1.4854 -6.6890 2.8102 44 1 -1.9107 -7.1871 4.4653 45 1 -2.3512 -2.1020 5.8715 46 1 1.7768 -5.1755 5.8313 47 1 1.1747 -3.6801 5.0706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131788968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:56 Heat of formation + Delta-G solvation = -62.428446 kcal Electronic energy + Delta-G solvation = -24064.997674 eV Core-core repulsion = 20860.456459 eV Total energy + Delta-G solvation = -3204.541216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.13356 -39.45348 -37.44119 -35.81233 -34.50064 -32.75242 -32.54892 -31.29260 -28.01645 -27.99807 -26.70242 -25.39047 -24.30514 -22.15872 -21.63552 -20.76151 -20.49007 -18.41210 -18.18474 -17.30330 -16.80646 -16.65258 -16.18118 -15.71099 -15.32775 -15.23644 -15.13950 -14.69053 -14.46718 -14.34731 -14.08922 -13.84012 -13.53795 -13.38302 -13.25039 -13.07819 -12.64071 -12.62200 -12.51782 -12.39061 -12.22800 -12.13379 -11.81323 -11.67435 -11.64894 -11.51368 -11.45279 -11.37654 -11.12304 -10.75231 -10.72482 -9.96322 -8.81084 -8.14931 -5.42600 1.26518 1.30988 1.37204 1.76113 2.39470 2.41775 3.06676 3.32694 3.77492 3.89562 3.93219 3.97125 4.02312 4.12930 4.21622 4.31288 4.40823 4.52445 4.55661 4.58830 4.67155 4.67644 4.79697 4.80373 4.85282 4.87492 4.97995 5.00311 5.03420 5.06724 5.10915 5.14812 5.19984 5.21326 5.28768 5.31178 5.47751 5.53176 5.54832 5.63156 5.68574 5.93348 6.20106 6.70529 6.95988 7.40774 7.68472 8.09410 9.04176 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.006053 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.370404 B = 4625.074036 C = 5311.870877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.095 4.095 5 C -0.132 4.132 6 C 0.503 3.497 7 O -0.599 6.599 8 N -0.697 5.697 9 C 0.130 3.870 10 H 0.072 0.928 11 C -0.109 4.109 12 C -0.121 4.121 13 C 0.157 3.843 14 H 0.034 0.966 15 C -0.130 4.130 16 N -0.607 5.607 17 C -0.217 4.217 18 H 0.076 0.924 19 C -0.031 4.031 20 N -0.954 5.954 21 Si 0.922 3.078 22 H -0.306 1.306 23 H -0.315 1.315 24 H -0.257 1.257 25 C 0.112 3.888 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.062 0.938 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.409 0.591 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.034 0.966 45 H 0.254 0.746 46 H 0.029 0.971 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.871 -4.913 -13.747 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.133 4.133 5 C -0.172 4.172 6 C 0.291 3.709 7 O -0.481 6.481 8 N -0.348 5.348 9 C 0.024 3.976 10 H 0.090 0.910 11 C -0.147 4.147 12 C -0.160 4.160 13 C 0.053 3.947 14 H 0.052 0.948 15 C -0.188 4.188 16 N -0.332 5.332 17 C -0.347 4.347 18 H 0.093 0.907 19 C -0.225 4.225 20 N -0.601 5.601 21 Si 0.755 3.245 22 H -0.235 1.235 23 H -0.245 1.245 24 H -0.181 1.181 25 C -0.014 4.014 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.112 0.888 37 H 0.247 0.753 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.218 -4.427 -13.093 17.188 hybrid contribution -0.216 0.703 1.473 1.647 sum 10.002 -3.724 -11.619 15.777 Atomic orbital electron populations 1.21927 0.95479 1.01989 1.01552 1.21111 0.95634 0.96568 0.97418 1.21831 1.01167 0.95561 1.01819 1.21343 1.00795 0.93191 0.97944 1.21738 1.03133 0.96486 0.95813 1.21395 0.78441 0.82346 0.88730 1.90632 1.43910 1.66789 1.46779 1.45839 1.56701 1.09178 1.23100 1.21332 0.95829 0.94617 0.85863 0.91035 1.21681 0.98563 0.91369 1.03071 1.21974 0.94128 1.01976 0.97936 1.20839 0.95663 0.82890 0.95305 0.94787 1.21746 0.96099 1.00579 1.00336 1.44542 1.01421 1.07846 1.79416 1.18872 0.91963 1.10233 1.13595 0.90695 1.25720 0.97758 0.98512 1.00517 1.69896 1.36317 1.15268 1.38652 0.86273 0.78039 0.77866 0.82353 1.23506 1.24457 1.18130 1.21682 0.88161 0.95705 0.95867 0.91097 0.92532 0.94596 0.88991 0.92260 0.91139 0.94032 0.94873 0.91895 0.85569 0.88771 0.75346 0.90106 0.89103 0.88505 0.91863 0.90074 0.93574 0.94683 0.93679 0.95363 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.95 71.98 0.64 -2.85 16 2 C -0.09 -1.91 2.92 -10.80 -0.03 -1.94 16 3 C -0.15 -2.91 9.19 71.98 0.66 -2.25 16 4 C -0.09 -2.70 3.97 30.59 0.12 -2.58 16 5 C -0.13 -3.67 5.46 29.85 0.16 -3.50 16 6 C 0.50 18.50 7.80 87.66 0.68 19.19 16 7 O -0.60 -27.61 15.64 -3.03 -0.05 -27.66 16 8 N -0.70 -22.99 4.92 -442.17 -2.17 -25.17 16 9 C 0.13 4.49 2.81 45.07 0.13 4.62 16 10 H 0.07 2.58 7.58 -2.39 -0.02 2.56 16 11 C -0.11 -2.66 5.59 30.62 0.17 -2.49 16 12 C -0.12 -2.95 5.21 30.67 0.16 -2.79 16 13 C 0.16 5.31 3.49 44.97 0.16 5.47 16 14 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 15 C -0.13 -4.19 7.94 71.98 0.57 -3.62 16 16 N -0.61 -26.99 2.69 -675.15 -1.81 -28.81 16 17 C -0.22 -11.74 9.07 84.03 0.76 -10.98 16 18 H 0.08 4.27 6.36 -2.91 -0.02 4.26 16 19 C -0.03 -1.84 5.25 84.86 0.45 -1.40 16 20 N -0.95 -61.10 13.97 21.65 0.30 -60.80 16 21 Si 0.92 50.37 24.36 68.60 1.67 52.04 16 22 H -0.31 -17.53 6.72 99.48 0.67 -16.86 16 23 H -0.32 -17.47 7.11 99.48 0.71 -16.77 16 24 H -0.26 -13.16 6.44 99.48 0.64 -12.52 16 25 C 0.11 4.99 3.79 86.36 0.33 5.32 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.32 6.56 -2.39 -0.02 1.30 16 28 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.03 1.17 8.10 -2.38 -0.02 1.16 16 34 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 35 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.09 2.72 6.56 -2.39 -0.02 2.70 16 37 H 0.41 11.36 6.77 -92.70 -0.63 10.73 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.06 1.53 6.40 -2.39 -0.02 1.52 16 42 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 1.57 7.43 -2.39 -0.02 1.55 16 44 H 0.03 1.31 7.63 -2.39 -0.02 1.29 16 45 H 0.25 15.92 8.31 -92.71 -0.77 15.15 16 46 H 0.03 1.26 6.94 -2.39 -0.02 1.24 16 47 H 0.03 1.86 4.62 -2.39 -0.01 1.85 16 Total: -1.00 -74.69 352.34 3.10 -71.59 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.20 Total: 18.61 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 4.96 Total: 0.19 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -3.69 Total: -114.77 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.05 Total: -27.66 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 1.67 Total: 52.04 kcal Total: -74.69 3.10 -71.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131788968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.162 kcal (2) G-P(sol) polarization free energy of solvation -74.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds