Wall clock time and date at job start Tue Mar 31 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47057 * 2 1 4 4 C 1.52997 * 109.47243 * 120.00287 * 2 1 3 5 5 C 1.53002 * 109.47332 * 65.00159 * 4 2 1 6 6 C 1.50698 * 109.47221 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99776 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00007 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99871 * 179.72597 * 8 6 5 10 10 H 1.08992 * 109.49798 * 35.20957 * 9 8 6 11 11 C 1.53040 * 109.49686 * 155.27629 * 9 8 6 12 12 C 1.53040 * 109.53853 * 181.31741 * 11 9 8 13 13 C 1.53193 * 109.31218 * 298.63148 * 12 11 9 14 14 H 1.09001 * 109.59118 * 294.85018 * 13 12 11 15 15 C 1.52998 * 109.58817 * 174.41957 * 13 12 11 16 16 N 1.46935 * 108.77421 * 54.63284 * 13 12 11 17 17 C 1.36935 * 120.62767 * 126.41097 * 16 13 12 18 18 H 1.08002 * 120.00015 * 330.16677 * 17 16 13 19 19 C 1.38816 * 120.00201 * 150.16875 * 17 16 13 20 20 N 1.31620 * 119.99258 * 344.47985 * 19 17 16 21 21 Si 1.86793 * 120.00436 * 164.48387 * 19 17 16 22 22 H 1.48501 * 109.47147 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47247 * 119.99708 * 21 19 17 24 24 H 1.48499 * 109.46916 * 240.00289 * 21 19 17 25 25 C 1.46916 * 118.73972 * 306.39691 * 16 13 12 26 26 H 1.08996 * 109.47192 * 60.00005 * 1 2 3 27 27 H 1.09007 * 109.46956 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47212 * 299.99600 * 1 2 3 29 29 H 1.08999 * 109.47212 * 240.00400 * 2 1 3 30 30 H 1.08990 * 109.47245 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46979 * 300.00577 * 3 2 1 32 32 H 1.08999 * 109.46783 * 60.00137 * 3 2 1 33 33 H 1.09005 * 109.47309 * 304.99819 * 4 2 1 34 34 H 1.09000 * 109.47382 * 185.00304 * 4 2 1 35 35 H 1.08998 * 109.46886 * 59.99817 * 5 4 2 36 36 H 1.08996 * 109.46632 * 300.00044 * 5 4 2 37 37 H 0.97001 * 120.00318 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.46250 * 301.33757 * 11 9 8 39 39 H 1.09003 * 109.46127 * 61.30799 * 11 9 8 40 40 H 1.08997 * 109.50098 * 58.58044 * 12 11 9 41 41 H 1.08997 * 109.49733 * 178.68681 * 12 11 9 42 42 H 1.09005 * 109.46744 * 60.00597 * 15 13 12 43 43 H 1.09001 * 109.47171 * 180.02562 * 15 13 12 44 44 H 1.08994 * 109.47523 * 300.00117 * 15 13 12 45 45 H 0.97001 * 119.99594 * 179.97438 * 20 19 17 46 46 H 1.09007 * 109.58557 * 293.81402 * 25 16 13 47 47 H 1.08998 * 109.58687 * 173.39105 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 6 2.1383 -2.9061 2.4180 7 8 2.7596 -2.2937 3.2605 8 7 1.8975 -4.2220 2.5818 9 6 2.3916 -4.9141 3.7748 10 1 2.3463 -4.2409 4.6308 11 6 1.5245 -6.1454 4.0468 12 6 2.0196 -6.8507 5.3116 13 6 3.4645 -7.3139 5.1008 14 1 3.4946 -8.0730 4.3191 15 6 4.0124 -7.8952 6.4057 16 7 4.2773 -6.1585 4.6967 17 6 5.4202 -5.8367 5.3789 18 1 5.5034 -6.0652 6.4312 19 6 6.4718 -5.2167 4.7181 20 7 6.5099 -5.2105 3.4025 21 14 7.8326 -4.3913 5.6959 22 1 7.5572 -4.5369 7.1478 23 1 9.1329 -5.0310 5.3717 24 1 7.8892 -2.9494 5.3455 25 6 3.8408 -5.3553 3.5466 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2618 2.1370 34 1 3.1263 -0.6443 1.2951 35 1 2.0700 -2.6550 0.3001 36 1 0.5491 -2.2724 1.1420 37 1 1.4009 -4.7118 1.9078 38 1 0.4884 -5.8366 4.1852 39 1 1.5896 -6.8295 3.2007 40 1 1.9783 -6.1596 6.1534 41 1 1.3872 -7.7142 5.5178 42 1 3.4006 -8.7444 6.7103 43 1 5.0405 -8.2237 6.2537 44 1 3.9866 -7.1314 7.1828 45 1 7.2446 -4.7770 2.9406 46 1 3.9015 -5.9547 2.6381 47 1 4.4793 -4.4771 3.4507 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131788969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:00 Heat of formation + Delta-G solvation = -48.528319 kcal Electronic energy + Delta-G solvation = -23317.035341 eV Core-core repulsion = 20113.096880 eV Total energy + Delta-G solvation = -3203.938461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.49532 -37.72492 -36.47837 -34.29347 -32.76986 -31.33991 -30.17630 -29.72576 -27.28119 -26.11845 -25.08507 -23.92653 -22.21376 -20.68179 -19.98152 -19.77964 -19.13590 -16.62351 -16.40977 -15.64076 -15.56569 -14.89165 -14.59332 -14.11276 -13.84066 -13.75681 -13.50833 -13.34256 -13.23191 -12.64530 -12.49037 -12.35201 -12.30398 -11.87907 -11.75626 -11.44648 -11.27999 -11.08637 -10.85723 -10.82028 -10.68622 -10.67764 -10.54462 -10.46587 -10.35695 -10.21370 -9.92484 -9.70068 -9.40369 -9.20100 -8.44462 -8.37511 -6.56541 -5.70605 -3.15285 3.15736 3.44291 3.52449 3.53516 3.65646 4.56866 4.76222 4.80475 4.85028 5.16962 5.29539 5.38667 5.39776 5.41285 5.51101 5.53423 5.59787 5.61132 5.67331 5.72485 5.76651 5.85295 5.98629 6.00507 6.02282 6.14247 6.15306 6.30358 6.33530 6.35133 6.42290 6.43475 6.49013 6.55757 6.66057 6.79681 7.04293 7.07855 7.16039 7.37302 7.78366 7.90010 8.04029 8.54380 8.77868 9.28631 9.92874 10.48552 11.37603 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.004689 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.539094 B = 5970.065329 C = 7370.000451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.099 4.099 5 C -0.140 4.140 6 C 0.506 3.494 7 O -0.535 6.535 8 N -0.724 5.724 9 C 0.116 3.884 10 H 0.080 0.920 11 C -0.116 4.116 12 C -0.126 4.126 13 C 0.165 3.835 14 H 0.024 0.976 15 C -0.136 4.136 16 N -0.584 5.584 17 C -0.253 4.253 18 H 0.070 0.930 19 C 0.006 3.994 20 N -0.900 5.900 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.288 1.288 25 C 0.170 3.830 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.391 0.609 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.252 0.748 46 H 0.016 0.984 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.690 4.168 -6.415 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.137 4.137 5 C -0.181 4.181 6 C 0.292 3.708 7 O -0.411 6.411 8 N -0.375 5.375 9 C 0.011 3.989 10 H 0.098 0.902 11 C -0.154 4.154 12 C -0.166 4.166 13 C 0.058 3.942 14 H 0.042 0.958 15 C -0.194 4.194 16 N -0.308 5.308 17 C -0.382 4.382 18 H 0.088 0.912 19 C -0.192 4.192 20 N -0.544 5.544 21 Si 0.729 3.271 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.215 1.215 25 C 0.043 3.957 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.224 0.776 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.034 0.966 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.086 4.676 -5.872 15.086 hybrid contribution 0.470 0.145 -0.049 0.494 sum -12.616 4.821 -5.921 14.747 Atomic orbital electron populations 1.21909 0.95514 1.01708 1.01524 1.21152 0.95674 0.96343 0.98520 1.21824 1.01224 0.95934 1.01462 1.21394 1.02074 0.92757 0.97516 1.21730 1.02232 0.97039 0.97058 1.20622 0.79872 0.82226 0.88088 1.90734 1.39824 1.66105 1.44456 1.46119 1.57494 1.09372 1.24482 1.21943 0.97312 0.92599 0.87092 0.90203 1.21672 0.97841 0.96970 0.98900 1.22046 0.98448 0.99162 0.96951 1.20488 0.89341 0.89645 0.94686 0.95810 1.21798 1.01010 0.98970 0.97589 1.44037 1.24922 1.26901 1.34900 1.19178 0.91221 1.35770 0.92035 0.91227 1.25082 0.97176 1.01681 0.95303 1.70019 1.32230 1.45927 1.06268 0.86272 0.81769 0.79420 0.79623 1.20205 1.21807 1.21515 1.21054 0.89440 0.96556 0.88693 0.93020 0.92525 0.92699 0.91242 0.92548 0.92967 0.92684 0.91314 0.91013 0.89257 0.89382 0.77630 0.93189 0.92364 0.92117 0.92751 0.94367 0.92025 0.92787 0.93830 0.96637 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.95 37.16 0.33 -0.93 16 2 C -0.10 -0.96 2.92 -90.62 -0.26 -1.23 16 3 C -0.15 -1.38 9.19 37.16 0.34 -1.04 16 4 C -0.10 -1.25 3.97 -26.73 -0.11 -1.36 16 5 C -0.14 -1.72 5.46 -27.88 -0.15 -1.87 16 6 C 0.51 8.82 7.79 -10.99 -0.09 8.73 16 7 O -0.53 -12.06 15.65 5.55 0.09 -11.97 16 8 N -0.72 -11.86 5.08 -53.69 -0.27 -12.13 16 9 C 0.12 2.30 2.60 -67.81 -0.18 2.12 16 10 H 0.08 1.82 7.58 -51.93 -0.39 1.42 16 11 C -0.12 -1.90 5.35 -26.69 -0.14 -2.04 16 12 C -0.13 -2.19 5.37 -26.61 -0.14 -2.33 16 13 C 0.16 3.44 3.50 -67.59 -0.24 3.20 16 14 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 15 C -0.14 -2.60 7.95 37.16 0.30 -2.30 16 16 N -0.58 -14.81 2.99 -164.77 -0.49 -15.30 16 17 C -0.25 -7.03 8.58 -15.06 -0.13 -7.16 16 18 H 0.07 1.89 6.23 -52.49 -0.33 1.56 16 19 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 20 N -0.90 -27.06 11.23 55.49 0.62 -26.44 16 21 Si 0.90 22.71 29.58 -169.99 -5.03 17.68 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 C 0.17 4.18 4.86 -3.72 -0.02 4.16 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.94 8.10 -51.93 -0.42 0.51 16 34 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.86 6.56 -51.93 -0.34 0.52 16 37 H 0.39 4.95 8.60 -40.82 -0.35 4.60 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 44 H 0.05 1.05 7.40 -51.93 -0.38 0.67 16 45 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 47 H 0.09 2.69 6.15 -51.93 -0.32 2.37 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -32.68 362.53 -8.94 -41.62 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.75 Total: 3.03 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.57 Total: -1.95 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.14 Total: -53.87 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.68 -8.94 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131788969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.903 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds