Wall clock time and date at job start Tue Mar 31 2020 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.58288 * 2 1 4 4 C 1.53190 * 109.58820 * 239.71696 * 2 1 3 5 5 C 1.53033 * 109.31373 * 185.57804 * 4 2 1 6 6 C 1.53049 * 109.53870 * 61.36350 * 5 4 2 7 7 H 1.08997 * 109.49497 * 178.68271 * 6 5 4 8 8 N 1.46498 * 109.52315 * 58.60276 * 6 5 4 9 9 C 1.34776 * 119.99681 * 155.14780 * 8 6 5 10 10 O 1.21280 * 120.00013 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99673 * 180.02562 * 9 8 6 12 12 C 1.52996 * 109.47156 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47343 * 59.99385 * 12 11 9 14 14 C 1.52995 * 109.47615 * 179.97438 * 12 11 9 15 15 C 1.53001 * 109.46943 * 299.99682 * 12 11 9 16 16 C 1.53185 * 109.30948 * 298.63147 * 6 5 4 17 17 N 1.46930 * 108.89398 * 54.56645 * 16 6 5 18 18 C 1.36939 * 120.63191 * 126.45721 * 17 16 6 19 19 H 1.07996 * 119.99920 * 208.64657 * 18 17 16 20 20 C 1.38812 * 119.99754 * 28.64302 * 18 17 16 21 21 N 1.31612 * 120.00536 * 14.58413 * 20 18 17 22 22 Si 1.86809 * 119.99890 * 194.58590 * 20 18 17 23 23 H 1.48501 * 109.46823 * 60.00087 * 22 20 18 24 24 H 1.48499 * 109.47223 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.46879 * 300.00427 * 22 20 18 26 26 H 1.09002 * 109.47365 * 180.28991 * 1 2 3 27 27 H 1.09007 * 109.47225 * 300.28554 * 1 2 3 28 28 H 1.09001 * 109.47403 * 60.28200 * 1 2 3 29 29 H 1.08998 * 109.49855 * 65.61931 * 4 2 1 30 30 H 1.09005 * 109.49129 * 305.52978 * 4 2 1 31 31 H 1.08997 * 109.46050 * 301.34352 * 5 4 2 32 32 H 1.09004 * 109.45089 * 181.37738 * 5 4 2 33 33 H 0.96996 * 120.00100 * 335.14157 * 8 6 5 34 34 H 1.09005 * 109.46762 * 299.99421 * 11 9 8 35 35 H 1.08988 * 109.47653 * 59.99629 * 11 9 8 36 36 H 1.08995 * 109.47157 * 60.00332 * 13 12 11 37 37 H 1.09004 * 109.47666 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.47246 * 299.99993 * 13 12 11 39 39 H 1.09006 * 109.47163 * 59.99655 * 14 12 11 40 40 H 1.08996 * 109.47646 * 179.97438 * 14 12 11 41 41 H 1.09005 * 109.46705 * 299.99598 * 14 12 11 42 42 H 1.09005 * 109.47397 * 60.00159 * 15 12 11 43 43 H 1.09008 * 109.47540 * 179.97438 * 15 12 11 44 44 H 1.08999 * 109.47221 * 300.00172 * 15 12 11 45 45 H 1.09004 * 109.58351 * 174.42018 * 16 6 5 46 46 H 1.09001 * 109.59114 * 294.70517 * 16 6 5 47 47 H 0.97000 * 120.00759 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5674 -0.8465 -1.1712 6 6 3.9569 -1.6658 0.0615 7 1 5.0411 -1.7697 0.1015 8 7 3.3411 -2.9927 -0.0180 9 6 3.8965 -4.0334 0.6338 10 8 4.9063 -3.8715 1.2857 11 6 3.2634 -5.3985 0.5515 12 6 4.0849 -6.3922 1.3751 13 6 4.1241 -5.9353 2.8348 14 6 3.4419 -7.7780 1.2922 15 6 5.5102 -6.4570 0.8226 16 6 3.4651 -0.9485 1.3225 17 7 2.0229 -0.6981 1.1956 18 6 1.1545 -1.1107 2.1708 19 1 0.1343 -1.3571 1.9164 20 6 1.5858 -1.2122 3.4864 21 7 2.7182 -0.6506 3.8529 22 14 0.5586 -2.1458 4.7366 23 1 0.4079 -3.5567 4.2986 24 1 1.2334 -2.1080 6.0589 25 1 -0.7815 -1.5156 4.8458 26 1 -0.3634 -1.0277 0.0052 27 1 -0.3634 0.5183 0.8875 28 1 -0.3634 0.5094 -0.8925 29 1 1.7660 -0.1642 -2.1370 30 1 1.6029 -1.7237 -1.2934 31 1 4.0061 0.1487 -1.0991 32 1 3.9376 -1.3423 -2.0685 33 1 2.5337 -3.1222 -0.5397 34 1 2.2481 -5.3525 0.9456 35 1 3.2350 -5.7239 -0.4883 36 1 3.1088 -5.8891 3.2284 37 1 4.7099 -6.6430 3.4216 38 1 4.5822 -4.9479 2.8943 39 1 3.4137 -8.1038 0.2524 40 1 4.0274 -8.4860 1.8786 41 1 2.4266 -7.7315 1.6862 42 1 5.9682 -5.4696 0.8821 43 1 6.0958 -7.1646 1.4097 44 1 5.4823 -6.7825 -0.2173 45 1 3.6518 -1.5744 2.1952 46 1 3.9922 -0.0008 1.4330 47 1 3.0198 -0.7218 4.7721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131818068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:02 Heat of formation + Delta-G solvation = -34.540415 kcal Electronic energy + Delta-G solvation = -24625.249817 eV Core-core repulsion = 21421.917917 eV Total energy + Delta-G solvation = -3203.331900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.76354 -37.99549 -36.01456 -33.97661 -32.70489 -30.86958 -29.85873 -27.90570 -26.98679 -26.83813 -25.99223 -24.87529 -22.13824 -21.00893 -20.25710 -18.76392 -18.49399 -16.71988 -16.16631 -15.42701 -15.06062 -14.64076 -14.18262 -14.07116 -13.98561 -13.85378 -13.59842 -13.23208 -12.83685 -12.54548 -12.40380 -12.08831 -11.90913 -11.73319 -11.46956 -11.21330 -11.15067 -11.04622 -10.85922 -10.84198 -10.72326 -10.65533 -10.45672 -10.38086 -10.36419 -10.28171 -9.93359 -9.48869 -9.41086 -8.85055 -8.41060 -8.21628 -6.56872 -5.70997 -3.15091 3.31693 3.39750 3.45776 3.47255 3.89353 4.52459 4.93168 5.08004 5.14092 5.33892 5.38789 5.44882 5.54054 5.59241 5.62806 5.68663 5.75889 5.80496 5.84128 6.02926 6.04416 6.07644 6.14050 6.14592 6.17915 6.34899 6.35179 6.36585 6.42177 6.45836 6.48656 6.56817 6.63689 6.71767 6.79559 6.91807 7.00777 7.07543 7.18648 7.48908 7.76327 7.86579 8.24346 8.52743 8.97077 9.27311 9.91863 10.47738 11.36525 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.007551 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.650992 B = 3707.264286 C = 4904.133322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.119 3.881 7 H 0.073 0.927 8 N -0.703 5.703 9 C 0.515 3.485 10 O -0.540 6.540 11 C -0.132 4.132 12 C -0.049 4.049 13 C -0.154 4.154 14 C -0.141 4.141 15 C -0.151 4.151 16 C 0.161 3.839 17 N -0.582 5.582 18 C -0.249 4.249 19 H 0.067 0.933 20 C 0.006 3.994 21 N -0.899 5.899 22 Si 0.896 3.104 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.393 0.607 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.041 0.959 45 H 0.100 0.900 46 H 0.022 0.978 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.634 -7.858 -10.137 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.091 0.909 8 N -0.353 5.353 9 C 0.301 3.699 10 O -0.419 6.419 11 C -0.172 4.172 12 C -0.049 4.049 13 C -0.211 4.211 14 C -0.198 4.198 15 C -0.208 4.208 16 C 0.035 3.965 17 N -0.305 5.305 18 C -0.379 4.379 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.726 3.274 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.211 1.211 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.227 0.773 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.118 0.882 46 H 0.039 0.961 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.421 -7.705 -9.485 12.303 hybrid contribution -1.033 -0.538 0.480 1.260 sum 0.388 -8.242 -9.005 12.214 Atomic orbital electron populations 1.21797 0.96201 1.01204 1.00103 1.20456 0.92813 0.93644 0.87261 0.95887 1.22054 0.95228 1.00629 0.98992 1.21686 0.96933 1.00106 0.96934 1.21726 0.96863 0.82172 0.97974 0.90865 1.45898 1.29428 1.08654 1.51310 1.20390 0.84503 0.86077 0.78892 1.90531 1.25621 1.84997 1.40727 1.21747 1.00910 0.93080 1.01509 1.20220 0.95250 0.93366 0.96103 1.22104 1.01382 1.03728 0.93842 1.21899 1.00512 0.96239 1.01165 1.22093 0.95747 1.03975 0.98940 1.21200 0.83575 0.97030 0.94721 1.44022 1.02795 1.64839 1.18856 1.19033 0.94338 1.38249 0.86286 0.91562 1.25024 0.97578 0.99777 0.96891 1.69960 1.22503 1.44836 1.17032 0.86481 0.79618 0.80199 0.81107 1.21149 1.21702 1.21095 0.92969 0.92112 0.94474 0.92999 0.92685 0.91316 0.93191 0.77289 0.89188 0.89909 0.93584 0.93696 0.89170 0.93045 0.92729 0.92789 0.89476 0.93570 0.94034 0.88238 0.96053 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.94 37.16 0.30 -2.14 16 2 C 0.17 3.23 3.49 -67.58 -0.24 2.99 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -2.05 5.21 -26.62 -0.14 -2.19 16 5 C -0.12 -1.87 5.59 -26.69 -0.15 -2.02 16 6 C 0.12 2.24 2.81 -67.81 -0.19 2.05 16 7 H 0.07 1.43 7.58 -51.93 -0.39 1.04 16 8 N -0.70 -12.27 4.92 -53.69 -0.26 -12.53 16 9 C 0.51 9.27 7.21 -10.98 -0.08 9.19 16 10 O -0.54 -11.31 11.01 5.56 0.06 -11.25 16 11 C -0.13 -1.92 4.77 -27.88 -0.13 -2.05 16 12 C -0.05 -0.70 0.77 -154.51 -0.12 -0.82 16 13 C -0.15 -2.55 8.17 37.16 0.30 -2.25 16 14 C -0.14 -1.64 8.47 37.16 0.31 -1.32 16 15 C -0.15 -2.11 8.18 37.16 0.30 -1.81 16 16 C 0.16 3.82 4.88 -3.71 -0.02 3.80 16 17 N -0.58 -13.68 2.92 -164.75 -0.48 -14.16 16 18 C -0.25 -6.51 8.63 -15.06 -0.13 -6.64 16 19 H 0.07 1.69 6.18 -52.49 -0.32 1.37 16 20 C 0.01 0.17 4.97 -17.43 -0.09 0.08 16 21 N -0.90 -26.27 11.08 55.49 0.61 -25.66 16 22 Si 0.90 21.91 29.58 -169.99 -5.03 16.88 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H 0.05 0.94 7.42 -51.93 -0.39 0.55 16 27 H 0.06 1.20 7.65 -51.92 -0.40 0.80 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.85 6.41 -51.93 -0.33 0.52 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.39 6.17 6.78 -40.82 -0.28 5.89 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.08 0.98 8.14 -51.94 -0.42 0.56 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.80 5.51 -51.93 -0.29 1.52 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.45 5.51 -51.93 -0.29 1.16 16 43 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 2.77 6.02 -51.93 -0.31 2.46 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -29.42 351.42 -8.34 -37.75 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -8.47 Total: 6.77 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.06 Total: -3.11 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.13 Total: -52.35 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.06 Total: -11.25 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.42 -8.34 -37.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131818068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.214 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds