Wall clock time and date at job start Tue Mar 31 2020 06:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.70358 * 2 1 4 4 C 1.53624 * 109.66732 * 120.59721 * 2 1 3 5 5 C 1.53040 * 109.24143 * 174.54815 * 4 2 1 6 6 C 1.53045 * 109.53952 * 298.51245 * 5 4 2 7 7 H 1.08993 * 109.49739 * 181.31820 * 6 5 4 8 8 N 1.46503 * 109.52266 * 301.39874 * 6 5 4 9 9 C 1.34775 * 120.00046 * 204.85698 * 8 6 5 10 10 O 1.21278 * 119.99866 * 359.97438 * 9 8 6 11 11 C 1.50694 * 119.99994 * 180.02562 * 9 8 6 12 12 C 1.53005 * 109.47151 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47030 * 59.99794 * 12 11 9 14 14 C 1.52998 * 109.47272 * 180.02562 * 12 11 9 15 15 C 1.53002 * 109.46926 * 299.99669 * 12 11 9 16 16 C 1.53188 * 109.31222 * 61.36417 * 6 5 4 17 17 N 1.46929 * 108.77927 * 305.36580 * 16 6 5 18 18 C 1.36930 * 120.63373 * 233.59025 * 17 16 6 19 19 H 1.08001 * 120.00310 * 150.98818 * 18 17 16 20 20 C 1.38815 * 119.99594 * 330.70941 * 18 17 16 21 21 N 1.31615 * 120.00463 * 345.38313 * 20 18 17 22 22 Si 1.86801 * 119.99762 * 165.38908 * 20 18 17 23 23 H 1.48497 * 109.47437 * 59.99696 * 22 20 18 24 24 H 1.48504 * 109.47222 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46936 * 299.99746 * 22 20 18 26 26 H 1.09001 * 109.46638 * 180.35131 * 1 2 3 27 27 H 1.09005 * 109.46774 * 300.34821 * 1 2 3 28 28 H 1.08994 * 109.47301 * 60.35072 * 1 2 3 29 29 H 1.09000 * 109.63387 * 54.55713 * 4 2 1 30 30 H 1.09001 * 109.43033 * 294.41738 * 4 2 1 31 31 H 1.09000 * 109.45802 * 178.49157 * 5 4 2 32 32 H 1.09000 * 109.45938 * 58.53165 * 5 4 2 33 33 H 0.97002 * 119.99743 * 24.85315 * 8 6 5 34 34 H 1.09001 * 109.46948 * 299.99749 * 11 9 8 35 35 H 1.09001 * 109.47447 * 59.99753 * 11 9 8 36 36 H 1.09001 * 109.47103 * 60.00000 * 13 12 11 37 37 H 1.08997 * 109.46945 * 180.02562 * 13 12 11 38 38 H 1.09000 * 109.47401 * 300.00015 * 13 12 11 39 39 H 1.08997 * 109.47197 * 59.99474 * 14 12 11 40 40 H 1.08999 * 109.47500 * 180.02562 * 14 12 11 41 41 H 1.09001 * 109.46853 * 299.99995 * 14 12 11 42 42 H 1.09005 * 109.46536 * 60.00201 * 15 12 11 43 43 H 1.09003 * 109.47111 * 179.97438 * 15 12 11 44 44 H 1.08997 * 109.47059 * 300.00229 * 15 12 11 45 45 H 1.09006 * 109.58529 * 185.57786 * 16 6 5 46 46 H 1.08999 * 109.70361 * 65.22288 * 16 6 5 47 47 H 0.96996 * 120.00863 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0471 -0.7363 1.2452 5 6 3.5713 -0.8498 1.1674 6 6 3.9616 -1.6627 -0.0692 7 1 5.0461 -1.7630 -0.1112 8 7 3.3501 -2.9919 0.0057 9 6 3.9079 -4.0282 -0.6511 10 8 4.9158 -3.8603 -1.3045 11 6 3.2786 -5.3953 -0.5746 12 6 4.1024 -6.3831 -1.4033 13 6 5.5283 -6.4464 -0.8520 14 6 3.4632 -7.7710 -1.3262 15 6 4.1392 -5.9195 -2.8609 16 6 3.4657 -0.9418 -1.3266 17 7 2.0225 -0.6994 -1.1946 18 6 1.1537 -1.1125 -2.1690 19 1 0.1371 -1.3709 -1.9119 20 6 1.5780 -1.1935 -3.4883 21 7 2.7004 -0.6124 -3.8555 22 14 0.5558 -2.1272 -4.7424 23 1 -0.7934 -1.5142 -4.8365 24 1 1.2217 -2.0655 -6.0684 25 1 0.4270 -3.5448 -4.3193 26 1 -0.3633 -1.0277 0.0063 27 1 -0.3633 0.5193 0.8869 28 1 -0.3633 0.5083 -0.8931 29 1 1.6097 -1.7338 1.2888 30 1 1.7690 -0.1773 2.1386 31 1 3.9444 -1.3481 2.0622 32 1 4.0066 0.1471 1.0989 33 1 2.5439 -3.1261 0.5280 34 1 3.2520 -5.7254 0.4639 35 1 2.2630 -5.3504 -0.9677 36 1 5.5020 -6.7766 0.1864 37 1 6.1152 -7.1497 -1.4427 38 1 5.9835 -5.4575 -0.9074 39 1 2.4475 -7.7256 -1.7191 40 1 4.0503 -8.4748 -1.9161 41 1 3.4366 -8.1015 -0.2878 42 1 4.5944 -4.9306 -2.9162 43 1 4.7265 -6.6229 -3.4512 44 1 3.1234 -5.8744 -3.2536 45 1 3.6532 -1.5635 -2.2021 46 1 3.9875 0.0090 -1.4350 47 1 2.9971 -0.6693 -4.7772 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131818069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:05 Heat of formation + Delta-G solvation = -34.775318 kcal Electronic energy + Delta-G solvation = -24620.740284 eV Core-core repulsion = 21417.398198 eV Total energy + Delta-G solvation = -3203.342086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.76233 -37.98423 -36.01158 -33.97564 -32.68504 -30.86594 -29.85830 -27.90536 -26.98797 -26.83868 -25.99253 -24.86861 -22.13395 -21.00468 -20.25507 -18.76651 -18.49737 -16.71811 -16.16414 -15.42198 -15.05987 -14.63922 -14.18211 -14.07178 -13.98592 -13.85350 -13.59580 -13.22281 -12.83620 -12.54537 -12.40351 -12.08751 -11.90921 -11.73417 -11.47019 -11.20858 -11.14627 -11.04720 -10.85693 -10.84276 -10.72400 -10.65474 -10.45706 -10.38198 -10.36667 -10.28587 -9.93954 -9.48321 -9.41115 -8.84989 -8.41142 -8.21563 -6.56043 -5.71277 -3.15894 3.31592 3.39663 3.45757 3.47155 3.89445 4.52526 4.93143 5.07989 5.14103 5.34457 5.38476 5.45029 5.54660 5.59254 5.62663 5.68635 5.75873 5.80480 5.84184 6.02927 6.04647 6.07637 6.13836 6.14521 6.18204 6.35103 6.35204 6.36670 6.42129 6.46010 6.48806 6.56968 6.63942 6.71563 6.79474 6.91800 7.00906 7.08004 7.18766 7.48621 7.75471 7.86452 8.24380 8.52862 8.97063 9.27245 9.91619 10.48053 11.36198 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013558 B = 0.007540 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.740747 B = 3712.603097 C = 4910.081486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.129 4.129 5 C -0.118 4.118 6 C 0.119 3.881 7 H 0.073 0.927 8 N -0.703 5.703 9 C 0.515 3.485 10 O -0.540 6.540 11 C -0.132 4.132 12 C -0.049 4.049 13 C -0.150 4.150 14 C -0.141 4.141 15 C -0.154 4.154 16 C 0.162 3.838 17 N -0.582 5.582 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.007 3.993 21 N -0.899 5.899 22 Si 0.896 3.104 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.285 1.285 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.393 0.607 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.098 0.902 46 H 0.022 0.978 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 -7.920 10.092 12.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.091 0.909 8 N -0.353 5.353 9 C 0.301 3.699 10 O -0.419 6.419 11 C -0.172 4.172 12 C -0.049 4.049 13 C -0.207 4.207 14 C -0.198 4.198 15 C -0.211 4.211 16 C 0.036 3.964 17 N -0.305 5.305 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.192 4.192 21 N -0.543 5.543 22 Si 0.726 3.274 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.211 1.211 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.227 0.773 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.116 0.884 46 H 0.040 0.960 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.486 -7.762 9.442 12.312 hybrid contribution -1.027 -0.528 -0.493 1.256 sum 0.459 -8.290 8.948 12.207 Atomic orbital electron populations 1.21788 0.96178 1.01146 1.00148 1.20552 0.92807 0.93566 0.87292 0.95835 1.22130 0.95195 1.00594 0.98976 1.21686 0.96947 1.00119 0.96899 1.21718 0.96890 0.82150 0.97940 0.90876 1.45899 1.29543 1.08697 1.51133 1.20389 0.84455 0.86116 0.78899 1.90530 1.25738 1.84890 1.40746 1.21749 1.00925 0.93079 1.01496 1.20223 0.95244 0.93380 0.96091 1.22090 0.95734 1.03978 0.98945 1.21898 1.00526 0.96223 1.01169 1.22106 1.01370 1.03728 0.93856 1.21182 0.83580 0.96967 0.94715 1.44038 1.02684 1.64791 1.18993 1.19027 0.94747 1.38102 0.86099 0.91589 1.25049 0.97668 0.99574 0.96941 1.69963 1.23194 1.44274 1.16859 0.86484 0.79613 0.80196 0.81119 1.21088 1.21712 1.21132 0.92996 0.94488 0.92076 0.92669 0.93054 0.93199 0.91328 0.77276 0.89909 0.89176 0.94035 0.93572 0.89483 0.92787 0.92731 0.93047 0.89163 0.93700 0.93582 0.88408 0.96013 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.95 37.16 0.30 -2.13 16 2 C 0.16 3.22 3.51 -67.37 -0.24 2.99 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -2.05 5.23 -26.39 -0.14 -2.18 16 5 C -0.12 -1.86 5.58 -26.69 -0.15 -2.01 16 6 C 0.12 2.24 2.81 -67.81 -0.19 2.05 16 7 H 0.07 1.43 7.58 -51.93 -0.39 1.03 16 8 N -0.70 -12.25 4.92 -53.69 -0.26 -12.52 16 9 C 0.51 9.26 7.21 -10.99 -0.08 9.19 16 10 O -0.54 -11.31 11.01 5.56 0.06 -11.24 16 11 C -0.13 -1.91 4.77 -27.88 -0.13 -2.05 16 12 C -0.05 -0.70 0.77 -154.51 -0.12 -0.81 16 13 C -0.15 -2.11 8.18 37.16 0.30 -1.80 16 14 C -0.14 -1.64 8.47 37.16 0.31 -1.32 16 15 C -0.15 -2.55 8.17 37.16 0.30 -2.25 16 16 C 0.16 3.84 4.88 -3.71 -0.02 3.82 16 17 N -0.58 -13.67 2.90 -164.51 -0.48 -14.15 16 18 C -0.25 -6.53 8.59 -15.06 -0.13 -6.66 16 19 H 0.07 1.69 6.22 -52.49 -0.33 1.36 16 20 C 0.01 0.19 4.97 -17.43 -0.09 0.10 16 21 N -0.90 -26.26 11.13 55.49 0.62 -25.64 16 22 Si 0.90 21.91 29.58 -169.99 -5.03 16.88 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H 0.05 0.93 7.44 -51.93 -0.39 0.55 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.21 7.62 -51.93 -0.40 0.82 16 29 H 0.05 0.85 6.41 -51.93 -0.33 0.52 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.39 6.16 6.78 -40.82 -0.28 5.89 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.45 5.51 -51.93 -0.29 1.16 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 1.80 5.51 -51.93 -0.29 1.52 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -29.41 351.54 -8.33 -37.74 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -8.48 Total: 6.72 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.06 Total: -3.08 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.12 Total: -52.31 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.06 Total: -11.24 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.41 -8.33 -37.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131818069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.962 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds