Wall clock time and date at job start Tue Mar 31 2020 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.58138 * 2 1 4 4 C 1.53189 * 109.58241 * 120.42672 * 2 1 3 5 5 C 1.53041 * 109.31137 * 174.42148 * 4 2 1 6 6 C 1.53039 * 109.53900 * 298.63896 * 5 4 2 7 7 H 1.09008 * 109.52301 * 301.39622 * 6 5 4 8 8 N 1.46501 * 109.50062 * 181.31486 * 6 5 4 9 9 C 1.34775 * 120.00208 * 155.15597 * 8 6 5 10 10 O 1.21286 * 120.00277 * 0.02562 * 9 8 6 11 11 C 1.50707 * 119.99970 * 179.97438 * 9 8 6 12 12 C 1.52997 * 109.47099 * 180.02562 * 11 9 8 13 13 C 1.53008 * 109.47360 * 59.99791 * 12 11 9 14 14 C 1.52996 * 109.47373 * 180.02562 * 12 11 9 15 15 C 1.53004 * 109.46940 * 300.00093 * 12 11 9 16 16 C 1.53196 * 109.31710 * 61.36203 * 6 5 4 17 17 N 1.46925 * 109.58591 * 239.71539 * 2 1 3 18 18 C 1.36937 * 120.63085 * 6.58839 * 17 2 1 19 19 H 1.07999 * 119.99984 * 330.15020 * 18 17 2 20 20 C 1.38812 * 119.99825 * 150.15840 * 18 17 2 21 21 N 1.31615 * 120.00411 * 344.50436 * 20 18 17 22 22 Si 1.86801 * 119.99694 * 164.51101 * 20 18 17 23 23 H 1.48500 * 109.47545 * 59.99518 * 22 20 18 24 24 H 1.48500 * 109.46994 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47228 * 299.99303 * 22 20 18 26 26 H 1.08992 * 109.47340 * 180.28279 * 1 2 3 27 27 H 1.09005 * 109.46812 * 60.27943 * 1 2 3 28 28 H 1.08998 * 109.47332 * 300.28754 * 1 2 3 29 29 H 1.08993 * 109.50016 * 294.36980 * 4 2 1 30 30 H 1.08997 * 109.49723 * 54.47210 * 4 2 1 31 31 H 1.08992 * 109.46529 * 178.61543 * 5 4 2 32 32 H 1.09007 * 109.45783 * 58.65320 * 5 4 2 33 33 H 0.97001 * 119.99946 * 335.15958 * 8 6 5 34 34 H 1.08998 * 109.46773 * 300.00159 * 11 9 8 35 35 H 1.08994 * 109.46956 * 60.00549 * 11 9 8 36 36 H 1.08997 * 109.46721 * 59.99826 * 13 12 11 37 37 H 1.09000 * 109.47123 * 180.02562 * 13 12 11 38 38 H 1.09003 * 109.47151 * 300.00359 * 13 12 11 39 39 H 1.08992 * 109.47123 * 59.99298 * 14 12 11 40 40 H 1.09004 * 109.47174 * 180.02562 * 14 12 11 41 41 H 1.09003 * 109.46778 * 299.99410 * 14 12 11 42 42 H 1.09007 * 109.47014 * 60.00384 * 15 12 11 43 43 H 1.09004 * 109.46918 * 179.97438 * 15 12 11 44 44 H 1.08994 * 109.47302 * 300.00014 * 15 12 11 45 45 H 1.08994 * 109.58620 * 185.58321 * 16 6 5 46 46 H 1.09000 * 109.70059 * 65.22339 * 16 6 5 47 47 H 0.96997 * 119.99983 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7309 1.2445 5 6 3.5674 -0.8495 1.1691 6 6 3.9569 -1.6656 -0.0655 7 1 3.4987 -2.6531 -0.0089 8 7 5.4142 -1.8052 -0.1197 9 6 5.9677 -2.8455 -0.7739 10 8 5.2593 -3.6658 -1.3182 11 6 7.4669 -2.9887 -0.8301 12 6 7.8298 -4.2433 -1.6271 13 6 7.2753 -4.1231 -3.0481 14 6 9.3517 -4.3891 -1.6837 15 6 7.2251 -5.4727 -0.9460 16 6 3.4651 -0.9453 -1.3249 17 7 2.0226 -0.6981 -1.1953 18 6 1.1537 -1.1107 -2.1700 19 1 0.1399 -1.3786 -1.9114 20 6 1.5760 -1.1848 -3.4902 21 7 2.6864 -0.5833 -3.8608 22 14 0.5680 -2.1381 -4.7411 23 1 -0.7926 -1.5503 -4.8320 24 1 1.2286 -2.0640 -6.0690 25 1 0.4666 -3.5576 -4.3168 26 1 -0.3633 -1.0276 0.0051 27 1 -0.3633 0.5095 -0.8925 28 1 -0.3634 0.5183 0.8874 29 1 1.7660 -0.1695 2.1366 30 1 1.6029 -1.7269 1.2891 31 1 3.9377 -1.3474 2.0652 32 1 4.0061 0.1460 1.0995 33 1 5.9808 -1.1489 0.3153 34 1 7.8975 -2.1130 -1.3157 35 1 7.8619 -3.0740 0.1821 36 1 7.7060 -3.2472 -3.5332 37 1 7.5334 -5.0171 -3.6157 38 1 6.1909 -4.0194 -3.0074 39 1 9.7464 -4.4749 -0.6713 40 1 9.6103 -5.2827 -2.2519 41 1 9.7828 -3.5133 -2.1687 42 1 6.1408 -5.3691 -0.9054 43 1 7.4833 -6.3665 -1.5141 44 1 7.6201 -5.5584 0.0662 45 1 3.6518 -1.5690 -2.1990 46 1 3.9901 0.0037 -1.4342 47 1 2.9813 -0.6348 -4.7834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131818070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:08 Heat of formation + Delta-G solvation = -37.052291 kcal Electronic energy + Delta-G solvation = -24015.072028 eV Core-core repulsion = 20811.631205 eV Total energy + Delta-G solvation = -3203.440823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.84192 -37.92207 -36.21167 -34.24168 -32.77570 -30.88191 -29.84226 -28.11955 -27.08046 -26.94490 -25.75386 -24.77689 -22.24291 -20.96139 -19.97658 -19.31956 -18.59276 -16.60736 -16.38639 -15.57304 -15.11270 -14.79112 -14.23196 -14.09813 -14.05830 -13.77487 -13.69168 -13.33072 -12.86385 -12.53443 -12.35182 -12.07780 -12.06014 -11.73752 -11.57993 -11.47284 -11.16361 -11.03124 -10.86564 -10.83138 -10.66726 -10.58453 -10.50393 -10.42657 -10.35633 -10.22846 -9.93615 -9.64201 -9.40393 -8.95414 -8.42234 -8.35953 -6.56444 -5.70570 -3.15247 3.14032 3.44548 3.50717 3.52919 3.66125 4.56839 4.80115 4.96033 4.98475 5.35922 5.39336 5.41101 5.53599 5.56179 5.59864 5.64207 5.67169 5.70896 5.73980 5.91096 5.99204 6.00839 6.04620 6.14108 6.24928 6.29726 6.30709 6.32972 6.39578 6.42205 6.48664 6.54126 6.65707 6.69404 6.78779 6.83611 7.07458 7.11402 7.15776 7.37202 7.78298 7.89315 8.04234 8.54377 8.79801 9.28618 9.92788 10.48599 11.37517 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.005819 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.271700 B = 4810.470293 C = 6141.691868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.080 0.920 8 N -0.724 5.724 9 C 0.509 3.491 10 O -0.525 6.525 11 C -0.132 4.132 12 C -0.050 4.050 13 C -0.155 4.155 14 C -0.141 4.141 15 C -0.153 4.153 16 C 0.170 3.830 17 N -0.584 5.584 18 C -0.254 4.254 19 H 0.069 0.931 20 C 0.008 3.992 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.283 1.283 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.391 0.609 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.093 0.907 46 H 0.015 0.985 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.198 -2.679 9.397 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.012 3.988 7 H 0.099 0.901 8 N -0.374 5.374 9 C 0.295 3.705 10 O -0.401 6.401 11 C -0.172 4.172 12 C -0.050 4.050 13 C -0.212 4.212 14 C -0.198 4.198 15 C -0.210 4.210 16 C 0.043 3.957 17 N -0.307 5.307 18 C -0.383 4.383 19 H 0.086 0.914 20 C -0.191 4.191 21 N -0.544 5.544 22 Si 0.730 3.270 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.209 1.209 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.223 0.777 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.111 0.889 46 H 0.033 0.967 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.726 -3.259 8.812 13.523 hybrid contribution 0.022 -0.033 -0.474 0.476 sum 9.748 -3.292 8.337 13.243 Atomic orbital electron populations 1.21802 0.96051 1.01348 1.00187 1.20481 0.93032 0.93518 0.87111 0.95838 1.22040 0.94402 1.01263 0.98868 1.21675 0.97325 0.99622 0.96802 1.21939 0.78203 1.00697 0.98010 0.90149 1.46152 1.08429 1.27138 1.55704 1.20528 0.90400 0.81212 0.78316 1.90605 1.63723 1.41713 1.44105 1.21775 0.93362 1.00112 1.01968 1.20241 0.94564 0.94094 0.96137 1.22117 1.04529 1.00403 0.94102 1.21899 0.95008 1.01616 1.01287 1.22106 1.04018 0.96196 0.98635 1.21054 0.83467 0.96773 0.94437 1.44018 1.02676 1.64851 1.19164 1.19077 0.95074 1.38169 0.85984 0.91375 1.25071 0.97794 0.99262 0.97019 1.69992 1.24087 1.43586 1.16715 0.86419 0.79461 0.80461 0.80706 1.20961 1.21705 1.20937 0.92835 0.91994 0.94391 0.92785 0.92121 0.93215 0.92395 0.77688 0.89296 0.89628 0.93596 0.93492 0.89171 0.92983 0.92625 0.92813 0.89473 0.93406 0.93925 0.88905 0.96681 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.95 37.16 0.30 -2.29 16 2 C 0.17 3.41 3.50 -67.60 -0.24 3.17 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.16 5.37 -26.61 -0.14 -2.30 16 5 C -0.12 -1.88 5.35 -26.69 -0.14 -2.02 16 6 C 0.12 2.26 2.60 -67.81 -0.18 2.08 16 7 H 0.08 1.78 7.58 -51.92 -0.39 1.39 16 8 N -0.72 -11.55 5.08 -53.68 -0.27 -11.82 16 9 C 0.51 8.50 7.21 -10.98 -0.08 8.42 16 10 O -0.52 -10.89 11.01 5.55 0.06 -10.83 16 11 C -0.13 -1.64 4.77 -27.88 -0.13 -1.77 16 12 C -0.05 -0.64 0.77 -154.51 -0.12 -0.76 16 13 C -0.15 -2.32 8.18 37.16 0.30 -2.01 16 14 C -0.14 -1.43 8.47 37.16 0.31 -1.11 16 15 C -0.15 -2.05 8.17 37.16 0.30 -1.74 16 16 C 0.17 4.10 4.86 -3.71 -0.02 4.09 16 17 N -0.58 -14.61 2.99 -164.77 -0.49 -15.10 16 18 C -0.25 -6.98 8.57 -15.06 -0.13 -7.11 16 19 H 0.07 1.83 6.24 -52.49 -0.33 1.50 16 20 C 0.01 0.22 4.94 -17.43 -0.09 0.13 16 21 N -0.90 -26.73 11.23 55.49 0.62 -26.10 16 22 Si 0.90 22.54 29.58 -169.99 -5.03 17.51 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 26 H 0.05 1.03 7.44 -51.93 -0.39 0.64 16 27 H 0.06 1.27 7.63 -51.93 -0.40 0.87 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.39 4.89 8.60 -40.82 -0.35 4.54 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.69 5.51 -51.93 -0.29 1.41 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 1.44 5.51 -51.92 -0.29 1.15 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 2.65 6.15 -51.93 -0.32 2.33 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -31.16 355.16 -8.45 -39.61 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.65 Total: 4.61 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -0.04 Total: -3.23 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.14 Total: -53.02 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.06 Total: -10.83 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.16 -8.45 -39.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131818070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.558 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds