Wall clock time and date at job start Tue Mar 31 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.70426 * 2 1 4 4 C 1.52767 * 109.50792 * 239.88136 * 2 1 3 5 5 C 1.53044 * 109.38430 * 185.70557 * 4 2 1 6 6 C 1.53037 * 109.53425 * 61.23858 * 5 4 2 7 7 H 1.09003 * 109.49518 * 58.58879 * 6 5 4 8 8 N 1.46506 * 109.52207 * 178.66544 * 6 5 4 9 9 C 1.34771 * 119.99950 * 204.85523 * 8 6 5 10 10 O 1.21280 * 120.00453 * 0.02562 * 9 8 6 11 11 C 1.50704 * 119.99912 * 179.97438 * 9 8 6 12 12 C 1.52997 * 109.47219 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47200 * 59.99953 * 12 11 9 14 14 C 1.52999 * 109.47072 * 180.02562 * 12 11 9 15 15 C 1.53000 * 109.46958 * 299.99922 * 12 11 9 16 16 C 1.53193 * 109.31733 * 298.63595 * 6 5 4 17 17 N 1.46921 * 109.58727 * 120.36128 * 2 1 3 18 18 C 1.36936 * 120.62875 * 353.41213 * 17 2 1 19 19 H 1.08001 * 120.00156 * 29.28156 * 18 17 2 20 20 C 1.38818 * 120.00001 * 209.28438 * 18 17 2 21 21 N 1.31621 * 119.99923 * 16.11222 * 20 18 17 22 22 Si 1.86799 * 119.99979 * 196.11925 * 20 18 17 23 23 H 1.48492 * 109.47248 * 94.01866 * 22 20 18 24 24 H 1.48503 * 109.46946 * 214.02096 * 22 20 18 25 25 H 1.48502 * 109.47045 * 334.01540 * 22 20 18 26 26 H 1.08999 * 109.46968 * 299.64364 * 1 2 3 27 27 H 1.09003 * 109.47273 * 59.64316 * 1 2 3 28 28 H 1.09000 * 109.47214 * 179.64274 * 1 2 3 29 29 H 1.09005 * 109.56167 * 65.67290 * 4 2 1 30 30 H 1.09000 * 109.38844 * 305.63588 * 4 2 1 31 31 H 1.09002 * 109.45424 * 301.22151 * 5 4 2 32 32 H 1.08991 * 109.44950 * 181.25869 * 5 4 2 33 33 H 0.96999 * 119.99285 * 24.86181 * 8 6 5 34 34 H 1.09001 * 109.47187 * 300.00809 * 11 9 8 35 35 H 1.09002 * 109.46614 * 60.00466 * 11 9 8 36 36 H 1.08998 * 109.46857 * 60.00689 * 13 12 11 37 37 H 1.09003 * 109.47045 * 180.02562 * 13 12 11 38 38 H 1.08991 * 109.47050 * 300.00094 * 13 12 11 39 39 H 1.09002 * 109.47461 * 59.99429 * 14 12 11 40 40 H 1.09003 * 109.47145 * 179.97438 * 14 12 11 41 41 H 1.09002 * 109.46910 * 299.99527 * 14 12 11 42 42 H 1.09005 * 109.47193 * 60.00102 * 15 12 11 43 43 H 1.09003 * 109.47040 * 180.02562 * 15 12 11 44 44 H 1.09002 * 109.47545 * 300.00381 * 15 12 11 45 45 H 1.08996 * 109.58348 * 294.85065 * 16 6 5 46 46 H 1.09000 * 109.58507 * 174.42445 * 16 6 5 47 47 H 0.96998 * 120.00033 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0402 -0.7226 -1.2456 5 6 3.5639 -0.8463 -1.1727 6 6 3.9523 -1.6687 0.0580 7 1 3.4904 -2.6542 -0.0024 8 7 5.4092 -1.8139 0.1100 9 6 5.9595 -2.8589 0.7592 10 8 5.2487 -3.6794 1.3000 11 6 7.4582 -3.0085 0.8121 12 6 7.8173 -4.2683 1.6025 13 6 7.2065 -5.4921 0.9168 14 6 9.3388 -4.4199 1.6568 15 6 7.2657 -4.1524 3.0250 16 6 3.4644 -0.9519 1.3210 17 7 2.0226 -0.6996 1.1944 18 6 1.1536 -1.1136 2.1684 19 1 0.1372 -1.3723 1.9109 20 6 1.5792 -1.2005 3.4869 21 7 2.6886 -0.5993 3.8613 22 14 0.5776 -2.1709 4.7296 23 1 1.1057 -3.5559 4.8178 24 1 0.6736 -1.5188 6.0603 25 1 -0.8430 -2.2093 4.2986 26 1 -0.3633 0.5083 0.8932 27 1 -0.3634 0.5194 -0.8868 28 1 -0.3633 -1.0276 -0.0064 29 1 1.7632 -0.1565 -2.1350 30 1 1.5963 -1.7169 -1.2943 31 1 4.0057 0.1475 -1.0997 32 1 3.9311 -1.3417 -2.0714 33 1 5.9776 -1.1577 -0.3228 34 1 7.8511 -3.0914 -0.2012 35 1 7.8933 -2.1365 1.3004 36 1 7.5995 -5.5746 -0.0965 37 1 7.4620 -6.3895 1.4802 38 1 6.1226 -5.3838 0.8785 39 1 9.7736 -3.5480 2.1455 40 1 9.5947 -5.3172 2.2204 41 1 9.7321 -4.5023 0.6436 42 1 6.1818 -4.0442 2.9867 43 1 7.5220 -5.0498 3.5883 44 1 7.7008 -3.2806 3.5135 45 1 3.9929 -0.0050 1.4309 46 1 3.6504 -1.5799 2.1924 47 1 2.9858 -0.6597 4.7827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131818071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:11 Heat of formation + Delta-G solvation = -37.070716 kcal Electronic energy + Delta-G solvation = -24018.346323 eV Core-core repulsion = 20814.904701 eV Total energy + Delta-G solvation = -3203.441622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.84562 -37.94027 -36.21747 -34.24563 -32.78953 -30.88595 -29.85114 -28.12021 -27.08190 -26.94441 -25.75427 -24.78572 -22.25131 -20.96860 -19.97959 -19.31901 -18.59340 -16.60943 -16.39111 -15.58052 -15.11400 -14.79446 -14.23355 -14.09835 -14.05800 -13.77532 -13.69211 -13.34029 -12.87258 -12.53695 -12.35384 -12.07890 -12.06302 -11.74446 -11.58072 -11.47711 -11.16804 -11.03357 -10.86581 -10.82677 -10.69337 -10.58713 -10.50443 -10.42602 -10.34636 -10.21297 -9.92622 -9.64073 -9.41001 -8.95531 -8.42399 -8.36537 -6.57576 -5.70922 -3.14978 3.13953 3.44880 3.51583 3.52653 3.65851 4.56656 4.80043 4.95958 4.98384 5.35636 5.38843 5.40894 5.53155 5.55993 5.59623 5.64143 5.67081 5.70786 5.73776 5.90999 5.99156 6.00431 6.04637 6.13713 6.24885 6.29727 6.30750 6.32976 6.39523 6.41799 6.48417 6.53809 6.65466 6.69412 6.78569 6.83422 7.07142 7.11136 7.15511 7.36829 7.77561 7.89581 8.04043 8.53703 8.79656 9.28244 9.92581 10.48110 11.37272 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.005828 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.713856 B = 4803.453933 C = 6134.212885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.080 0.920 8 N -0.724 5.724 9 C 0.509 3.491 10 O -0.525 6.525 11 C -0.132 4.132 12 C -0.050 4.050 13 C -0.152 4.152 14 C -0.141 4.141 15 C -0.155 4.155 16 C 0.170 3.830 17 N -0.584 5.584 18 C -0.253 4.253 19 H 0.070 0.930 20 C 0.007 3.993 21 N -0.899 5.899 22 Si 0.899 3.101 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.279 1.279 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.391 0.609 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.015 0.985 46 H 0.093 0.907 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.158 -2.683 -9.477 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.041 0.959 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.098 0.902 8 N -0.374 5.374 9 C 0.295 3.705 10 O -0.401 6.401 11 C -0.172 4.172 12 C -0.050 4.050 13 C -0.209 4.209 14 C -0.198 4.198 15 C -0.212 4.212 16 C 0.043 3.957 17 N -0.307 5.307 18 C -0.382 4.382 19 H 0.087 0.913 20 C -0.192 4.192 21 N -0.543 5.543 22 Si 0.729 3.271 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.204 1.204 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.223 0.777 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.033 0.967 46 H 0.111 0.889 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.674 -3.261 -8.901 13.544 hybrid contribution 0.044 -0.051 0.472 0.477 sum 9.718 -3.312 -8.429 13.284 Atomic orbital electron populations 1.21804 0.96033 1.01354 1.00199 1.20389 0.93047 0.93570 0.87110 0.95873 1.21976 0.94423 1.01298 0.98901 1.21674 0.97321 0.99606 0.96826 1.21940 0.78244 1.00646 0.98044 0.90155 1.46150 1.08442 1.26875 1.55960 1.20526 0.90417 0.81223 0.78287 1.90605 1.63549 1.41848 1.44137 1.21776 0.93373 1.00068 1.02001 1.20239 0.94573 0.94069 0.96154 1.22103 1.03997 0.96237 0.98611 1.21900 0.95008 1.01615 1.01287 1.22119 1.04529 1.00417 0.94093 1.21057 0.83492 0.96790 0.94393 1.44022 1.02745 1.64725 1.19224 1.19147 0.94860 1.38121 0.86104 0.91260 1.25062 0.97833 0.99334 0.96969 1.70015 1.24194 1.43472 1.16648 0.86331 0.79718 0.80172 0.80889 1.21370 1.21878 1.20409 0.91994 0.94381 0.92826 0.92746 0.92139 0.92386 0.93201 0.77684 0.89627 0.89294 0.93925 0.93406 0.89471 0.92809 0.92623 0.92986 0.89176 0.93492 0.93599 0.96682 0.88897 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.94 37.16 0.29 -2.29 16 2 C 0.17 3.41 3.48 -67.82 -0.24 3.18 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.16 5.34 -26.83 -0.14 -2.30 16 5 C -0.12 -1.88 5.36 -26.69 -0.14 -2.02 16 6 C 0.12 2.25 2.60 -67.81 -0.18 2.08 16 7 H 0.08 1.78 7.58 -51.93 -0.39 1.38 16 8 N -0.72 -11.54 5.08 -53.69 -0.27 -11.82 16 9 C 0.51 8.51 7.21 -10.99 -0.08 8.43 16 10 O -0.52 -10.90 11.01 5.56 0.06 -10.84 16 11 C -0.13 -1.64 4.77 -27.88 -0.13 -1.77 16 12 C -0.05 -0.64 0.77 -154.51 -0.12 -0.76 16 13 C -0.15 -2.05 8.18 37.16 0.30 -1.74 16 14 C -0.14 -1.43 8.47 37.16 0.31 -1.11 16 15 C -0.15 -2.32 8.17 37.16 0.30 -2.02 16 16 C 0.17 4.10 4.87 -3.71 -0.02 4.08 16 17 N -0.58 -14.60 2.99 -165.03 -0.49 -15.10 16 18 C -0.25 -6.96 8.58 -15.06 -0.13 -7.09 16 19 H 0.07 1.87 6.22 -52.49 -0.33 1.54 16 20 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 21 N -0.90 -26.72 11.25 55.49 0.62 -26.09 16 22 Si 0.90 22.54 29.58 -169.99 -5.03 17.52 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 H 0.06 1.27 7.62 -51.93 -0.40 0.87 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 1.03 7.44 -51.93 -0.39 0.65 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.39 4.89 8.60 -40.82 -0.35 4.54 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.44 5.51 -51.93 -0.29 1.15 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 1.70 5.51 -51.93 -0.29 1.41 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 2.65 6.14 -51.93 -0.32 2.33 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -31.21 355.12 -8.45 -39.66 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.64 Total: 4.55 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -0.05 Total: -3.23 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.14 Total: -53.01 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.06 Total: -10.84 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.21 -8.45 -39.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131818071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.591 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds