Wall clock time and date at job start Tue Mar 31 2020 06:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 C 1.53002 * 109.47412 * 120.00472 * 2 1 3 5 5 C 1.50695 * 109.47004 * 175.00111 * 4 2 1 6 6 O 1.21274 * 120.00413 * 0.27039 * 5 4 2 7 7 N 1.34784 * 119.99635 * 179.97438 * 5 4 2 8 8 C 1.46918 * 120.63039 * 359.71713 * 7 5 4 9 9 C 1.53629 * 108.54410 * 126.36956 * 8 7 5 10 10 C 1.53042 * 109.24095 * 54.85227 * 9 8 7 11 11 H 1.09006 * 109.45415 * 58.53401 * 10 9 8 12 12 C 1.52998 * 109.45112 * 178.49679 * 10 9 8 13 13 C 1.53042 * 109.54144 * 298.51747 * 10 9 8 14 14 H 1.08997 * 109.51819 * 301.39238 * 13 10 9 15 15 C 1.53001 * 109.49736 * 181.31429 * 13 10 9 16 16 N 1.46494 * 109.46692 * 175.16010 * 15 13 10 17 17 C 1.36944 * 119.99534 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00107 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99664 * 179.97438 * 17 16 15 20 20 N 1.31611 * 120.00126 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99630 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47317 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46864 * 120.00147 * 21 19 17 24 24 H 1.48496 * 109.46935 * 239.99903 * 21 19 17 25 25 C 1.46931 * 120.62757 * 179.97438 * 7 5 4 26 26 H 1.08999 * 109.47188 * 299.99205 * 1 2 3 27 27 H 1.08996 * 109.47663 * 59.99703 * 1 2 3 28 28 H 1.09007 * 109.47044 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47001 * 240.00507 * 2 1 3 30 30 H 1.09006 * 109.46731 * 60.00342 * 3 2 1 31 31 H 1.08997 * 109.47332 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47531 * 300.00909 * 3 2 1 33 33 H 1.09005 * 109.47089 * 54.99859 * 4 2 1 34 34 H 1.09002 * 109.46787 * 295.00201 * 4 2 1 35 35 H 1.08995 * 109.59003 * 246.20126 * 8 7 5 36 36 H 1.08997 * 109.58851 * 6.63324 * 8 7 5 37 37 H 1.09001 * 109.63104 * 294.86584 * 9 8 7 38 38 H 1.08998 * 109.46269 * 174.74377 * 9 8 7 39 39 H 1.08997 * 109.47392 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.46990 * 300.06884 * 12 10 9 41 41 H 1.08997 * 109.46826 * 60.06288 * 12 10 9 42 42 H 1.08996 * 109.47341 * 295.16110 * 15 13 10 43 43 H 1.09003 * 109.46789 * 55.16071 * 15 13 10 44 44 H 0.97000 * 120.00831 * 359.97438 * 16 15 13 45 45 H 0.97000 * 120.00207 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.58636 * 353.37407 * 25 7 5 47 47 H 1.09001 * 109.58241 * 113.65444 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1887 6 8 4.1453 -0.3700 0.2424 7 7 4.2150 -1.4314 2.1893 8 6 3.4990 -1.9815 3.3483 9 6 3.9100 -3.4513 3.5240 10 6 5.4344 -3.5398 3.6273 11 1 5.7766 -2.9390 4.4700 12 6 5.8468 -4.9978 3.8399 13 6 6.0663 -3.0142 2.3363 14 1 5.7057 -3.5988 1.4900 15 6 7.5889 -3.1335 2.4277 16 7 8.1871 -2.7389 1.1500 17 6 9.5474 -2.7651 0.9939 18 1 10.1791 -3.0761 1.8127 19 6 10.1142 -2.3917 -0.2171 20 7 9.3445 -2.0121 -1.2148 21 14 11.9698 -2.4266 -0.4298 22 1 12.6041 -2.8864 0.8316 23 1 12.3243 -3.3589 -1.5301 24 1 12.4558 -1.0630 -0.7605 25 6 5.6792 -1.5449 2.1444 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9563 0.8901 31 1 3.1299 1.4425 0.0005 32 1 1.6765 1.9564 -0.8898 33 1 1.6054 -1.7199 1.2950 34 1 1.7516 -0.1585 2.1369 35 1 3.7621 -1.4164 4.2424 36 1 2.4243 -1.9192 3.1772 37 1 3.5692 -4.0319 2.6666 38 1 3.4600 -3.8480 4.4340 39 1 6.9324 -5.0612 3.9140 40 1 5.3968 -5.3723 4.7593 41 1 5.5050 -5.5986 2.9972 42 1 7.9578 -2.4805 3.2187 43 1 7.8596 -4.1652 2.6525 44 1 7.6199 -2.4592 0.4146 45 1 9.7405 -1.7508 -2.0608 46 1 6.0434 -1.1944 1.1788 47 1 6.1169 -0.9427 2.9406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132601943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:25 Heat of formation + Delta-G solvation = -51.119249 kcal Electronic energy + Delta-G solvation = -23381.220869 eV Core-core repulsion = 20177.170057 eV Total energy + Delta-G solvation = -3204.050812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25249 -38.17873 -35.54487 -34.92732 -33.64159 -31.84384 -29.90302 -28.95230 -27.50406 -27.12006 -25.31901 -23.28222 -23.14681 -21.19336 -20.67635 -19.68549 -18.71303 -17.15742 -16.77444 -16.02173 -15.49392 -14.82780 -14.77757 -14.38779 -13.93493 -13.90958 -13.75859 -13.49381 -13.28858 -13.01457 -12.79544 -12.53826 -12.32808 -12.07142 -11.96666 -11.85254 -11.71479 -11.50765 -11.08308 -10.97107 -10.93489 -10.82760 -10.76082 -10.70117 -10.55906 -10.22235 -10.11927 -9.88959 -9.57916 -9.36769 -8.81201 -8.39695 -6.83930 -5.67983 -2.97502 2.84374 3.15981 3.48093 3.52934 3.55811 4.53573 4.62461 4.66905 4.76730 4.83070 4.88320 4.91895 5.15649 5.21037 5.31845 5.36709 5.40032 5.47665 5.54971 5.63722 5.64728 5.69480 5.70128 5.76553 5.82732 5.84252 5.90546 5.94435 5.99607 6.04667 6.09465 6.22307 6.27677 6.32262 6.35950 6.46524 6.49077 6.63802 6.73170 6.85659 6.93978 7.61564 7.76667 8.42444 8.49777 9.60781 10.19423 10.53493 11.54429 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.004553 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.686162 B = 6148.357470 C = 7695.310386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.154 4.154 4 C -0.134 4.134 5 C 0.508 3.492 6 O -0.527 6.527 7 N -0.614 5.614 8 C 0.107 3.893 9 C -0.129 4.129 10 C -0.084 4.084 11 H 0.070 0.930 12 C -0.148 4.148 13 C -0.101 4.101 14 H 0.073 0.927 15 C 0.159 3.841 16 N -0.733 5.733 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.929 5.929 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.120 3.880 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.026 0.974 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.103 0.897 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.438 0.003 10.971 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.211 4.211 4 C -0.174 4.174 5 C 0.296 3.704 6 O -0.403 6.403 7 N -0.348 5.348 8 C -0.016 4.016 9 C -0.167 4.167 10 C -0.104 4.104 11 H 0.089 0.911 12 C -0.205 4.205 13 C -0.120 4.120 14 H 0.091 0.909 15 C 0.031 3.969 16 N -0.378 5.378 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.002 4.002 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.044 0.956 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.121 0.879 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.937 0.241 10.489 21.649 hybrid contribution 0.842 -0.019 -0.283 0.888 sum -18.095 0.222 10.205 20.776 Atomic orbital electron populations 1.21856 0.95199 1.01524 1.01792 1.20879 0.94766 0.97065 0.97449 1.21960 1.03548 0.94854 1.00705 1.21787 0.92597 1.02458 1.00590 1.20692 0.89982 0.77769 0.81968 1.90728 1.70108 1.46723 1.32744 1.48236 1.08016 1.57860 1.20696 1.21808 0.96630 0.94385 0.88817 1.22060 0.96653 0.95806 1.02167 1.21089 0.94111 0.97102 0.98053 0.91145 1.21880 1.02230 0.95541 1.00848 1.21694 0.97293 0.95700 0.97363 0.90878 1.20721 0.88763 0.97382 0.90073 1.42429 1.04536 1.80428 1.10378 1.19249 0.83222 1.37590 0.97151 0.91220 1.24751 0.97640 1.02243 0.96283 1.69683 1.33484 1.51173 1.03414 0.86149 0.85651 0.77165 0.77420 1.20608 1.21926 1.21892 1.21688 0.77768 0.96301 1.04464 0.92824 0.92470 0.92810 0.90300 0.93623 0.90402 0.93044 0.89262 0.89319 0.91492 0.90086 0.91497 0.90999 0.91637 0.93263 0.92807 0.96466 0.95596 0.78117 0.93555 0.87883 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 37.15 0.34 -0.87 16 2 C -0.08 -0.91 2.57 -90.62 -0.23 -1.15 16 3 C -0.15 -1.84 8.93 37.16 0.33 -1.50 16 4 C -0.13 -1.41 3.52 -27.88 -0.10 -1.50 16 5 C 0.51 7.67 7.42 -10.98 -0.08 7.59 16 6 O -0.53 -10.43 13.37 5.56 0.07 -10.36 16 7 N -0.61 -8.62 2.97 -172.54 -0.51 -9.13 16 8 C 0.11 1.04 6.37 -3.49 -0.02 1.02 16 9 C -0.13 -1.27 5.38 -26.38 -0.14 -1.41 16 10 C -0.08 -1.04 2.22 -90.58 -0.20 -1.24 16 11 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 12 C -0.15 -1.75 8.82 37.16 0.33 -1.42 16 13 C -0.10 -1.67 1.92 -90.52 -0.17 -1.84 16 14 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 15 C 0.16 3.22 5.41 -4.04 -0.02 3.20 16 16 N -0.73 -19.16 5.38 -59.91 -0.32 -19.49 16 17 C -0.24 -6.94 9.99 -15.05 -0.15 -7.09 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -29.29 13.06 55.49 0.72 -28.57 16 21 Si 0.90 23.03 29.55 -169.99 -5.02 18.00 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 C 0.12 2.05 5.51 -3.73 -0.02 2.03 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.08 1.03 7.96 -51.93 -0.41 0.62 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.18 5.94 -51.93 -0.31 0.87 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.77 7.70 -51.93 -0.40 0.37 16 34 H 0.09 0.75 7.93 -51.93 -0.41 0.34 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.85 6.30 -51.93 -0.33 0.53 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16 44 H 0.38 10.81 6.89 -40.82 -0.28 10.53 16 45 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 46 H 0.10 2.23 6.21 -51.93 -0.32 1.91 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -33.39 359.53 -8.44 -41.83 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.56 Total: 6.96 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -0.24 Total: -4.66 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.11 Total: -57.19 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.39 -8.44 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132601943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.291 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds