Wall clock time and date at job start Tue Mar 31 2020 06:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 C 1.53002 * 109.47412 * 120.00472 * 2 1 3 5 5 C 1.50695 * 109.47004 * 175.00111 * 4 2 1 6 6 O 1.21274 * 120.00413 * 0.27039 * 5 4 2 7 7 N 1.34784 * 119.99635 * 179.97438 * 5 4 2 8 8 C 1.46923 * 120.63216 * 359.97438 * 7 5 4 9 9 C 1.53188 * 108.77648 * 233.58504 * 8 7 5 10 10 C 1.53039 * 109.31224 * 305.36847 * 9 8 7 11 11 H 1.09007 * 109.45661 * 181.38561 * 10 9 8 12 12 C 1.52998 * 109.45776 * 301.35093 * 10 9 8 13 13 C 1.53034 * 109.54129 * 61.36238 * 10 9 8 14 14 H 1.09001 * 109.49985 * 58.58802 * 13 10 9 15 15 C 1.53002 * 109.49950 * 178.64863 * 13 10 9 16 16 N 1.46497 * 109.47496 * 185.00010 * 15 13 10 17 17 C 1.36933 * 120.00315 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99652 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00269 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99636 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99986 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47183 * 59.99544 * 21 19 17 23 23 H 1.48503 * 109.46674 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47044 * 299.99214 * 21 19 17 25 25 C 1.46927 * 120.62699 * 179.71634 * 7 5 4 26 26 H 1.08999 * 109.47188 * 299.99205 * 1 2 3 27 27 H 1.08996 * 109.47663 * 59.99703 * 1 2 3 28 28 H 1.09007 * 109.47044 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47001 * 240.00507 * 2 1 3 30 30 H 1.08996 * 109.47531 * 300.00909 * 3 2 1 31 31 H 1.09006 * 109.46731 * 60.00342 * 3 2 1 32 32 H 1.08997 * 109.47332 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47089 * 54.99859 * 4 2 1 34 34 H 1.09002 * 109.46787 * 295.00201 * 4 2 1 35 35 H 1.09000 * 109.58464 * 353.37419 * 8 7 5 36 36 H 1.09000 * 109.58587 * 113.79788 * 8 7 5 37 37 H 1.09005 * 109.49574 * 65.31581 * 9 8 7 38 38 H 1.08999 * 109.49514 * 185.37747 * 9 8 7 39 39 H 1.09001 * 109.46872 * 60.00721 * 12 10 9 40 40 H 1.08999 * 109.47220 * 180.02562 * 12 10 9 41 41 H 1.08996 * 109.47554 * 300.00772 * 12 10 9 42 42 H 1.08995 * 109.47158 * 305.00665 * 15 13 10 43 43 H 1.09002 * 109.46861 * 65.00171 * 15 13 10 44 44 H 0.97006 * 119.99400 * 359.97438 * 16 15 13 45 45 H 0.97005 * 119.99700 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.58608 * 246.19889 * 25 7 5 47 47 H 1.08993 * 109.58827 * 6.63371 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1887 6 8 4.1453 -0.3700 0.2424 7 7 4.2150 -1.4314 2.1893 8 6 3.4985 -1.9865 3.3457 9 6 4.1027 -1.4029 4.6267 10 6 5.6110 -1.6616 4.6384 11 1 6.0396 -1.2689 5.5606 12 6 5.8706 -3.1672 4.5564 13 6 6.2588 -0.9667 3.4387 14 1 6.0533 0.1029 3.4831 15 6 7.7710 -1.1978 3.4699 16 7 8.4040 -0.4351 2.3911 17 6 9.7617 -0.4873 2.2210 18 1 10.3660 -1.0905 2.8825 19 6 10.3616 0.2358 1.1992 20 7 9.6252 0.9712 0.3934 21 14 12.2138 0.1650 0.9677 22 1 12.6267 -1.2371 0.7054 23 1 12.6015 1.0186 -0.1841 24 1 12.8854 0.6571 2.1972 25 6 5.6787 -1.5499 2.1417 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6765 1.9564 -0.8898 31 1 1.6766 1.9563 0.8901 32 1 3.1299 1.4425 0.0005 33 1 1.6054 -1.7199 1.2950 34 1 1.7516 -0.1585 2.1369 35 1 2.4435 -1.7193 3.2845 36 1 3.6029 -3.0715 3.3538 37 1 3.9174 -0.3292 4.6600 38 1 3.6447 -1.8781 5.4942 39 1 5.4416 -3.5601 3.6346 40 1 6.9448 -3.3517 4.5652 41 1 5.4102 -3.6623 5.4113 42 1 8.1691 -0.8686 4.4297 43 1 7.9792 -2.2592 3.3351 44 1 7.8611 0.1063 1.7968 45 1 10.0443 1.4762 -0.3210 46 1 5.9576 -2.5999 2.0535 47 1 6.0626 -0.9945 1.2861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132601944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:28 Heat of formation + Delta-G solvation = -47.847210 kcal Electronic energy + Delta-G solvation = -23552.219520 eV Core-core repulsion = 20348.310594 eV Total energy + Delta-G solvation = -3203.908926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36447 -38.31447 -35.52412 -34.89656 -33.45915 -31.82419 -29.92966 -28.62094 -27.38411 -27.09561 -25.23571 -24.49190 -23.11033 -21.16582 -20.70737 -19.27017 -18.07954 -17.18167 -16.78053 -15.95260 -15.51936 -15.02416 -14.87718 -14.53097 -14.31456 -13.92875 -13.73394 -13.45894 -13.15550 -12.93237 -12.76835 -12.46679 -12.31880 -12.23664 -11.92974 -11.89471 -11.60187 -11.23818 -11.09622 -11.03047 -10.90289 -10.84044 -10.74256 -10.68694 -10.53229 -10.26236 -10.13772 -9.91558 -9.57383 -9.37790 -8.80021 -8.34235 -6.84113 -5.67393 -2.97048 2.84602 3.16957 3.48986 3.52828 3.54618 4.54051 4.63445 4.68219 4.77011 4.83155 4.89380 4.94521 5.17051 5.23814 5.30554 5.34585 5.40250 5.48120 5.53832 5.60599 5.65227 5.67332 5.69557 5.73756 5.85057 5.85655 5.91353 5.94223 5.99516 6.04661 6.10779 6.21126 6.32903 6.35774 6.38404 6.40953 6.52316 6.65290 6.74084 6.83315 6.94374 7.62494 7.75857 8.43115 8.50380 9.61172 10.19753 10.53972 11.54853 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016087 B = 0.004605 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.087239 B = 6079.003534 C = 7529.693873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.154 4.154 4 C -0.134 4.134 5 C 0.508 3.492 6 O -0.527 6.527 7 N -0.613 5.613 8 C 0.106 3.894 9 C -0.129 4.129 10 C -0.085 4.085 11 H 0.072 0.928 12 C -0.152 4.152 13 C -0.101 4.101 14 H 0.072 0.928 15 C 0.160 3.840 16 N -0.733 5.733 17 C -0.243 4.243 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.287 1.287 25 C 0.120 3.880 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.019 0.981 43 H 0.022 0.978 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.066 0.934 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.074 -6.418 7.335 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.212 4.212 4 C -0.174 4.174 5 C 0.296 3.704 6 O -0.403 6.403 7 N -0.347 5.347 8 C -0.017 4.017 9 C -0.167 4.167 10 C -0.104 4.104 11 H 0.091 0.909 12 C -0.210 4.210 13 C -0.121 4.121 14 H 0.091 0.909 15 C 0.032 3.968 16 N -0.377 5.377 17 C -0.374 4.374 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.002 4.002 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.040 0.960 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.578 -6.200 6.822 21.639 hybrid contribution 0.871 0.131 -0.155 0.894 sum -18.707 -6.069 6.666 20.766 Atomic orbital electron populations 1.21858 0.95229 1.01444 1.01844 1.20874 0.94727 0.97152 0.97318 1.21968 1.03711 0.94736 1.00749 1.21790 0.92601 1.02396 1.00658 1.20690 0.89988 0.77568 0.82187 1.90728 1.70097 1.46498 1.33000 1.48223 1.07974 1.58003 1.20512 1.21740 0.96027 0.98336 0.85616 1.21942 0.96354 1.01465 0.96958 1.21068 0.94404 0.96171 0.98747 0.90929 1.21984 1.02457 0.95279 1.01233 1.21745 0.96585 1.00067 0.93690 0.90920 1.20677 0.88594 0.95167 0.92321 1.42412 1.05024 1.55752 1.34561 1.19157 0.83628 1.23358 1.11239 0.91335 1.24748 0.97723 0.99997 0.98384 1.69669 1.34115 1.33672 1.20322 0.86290 0.85620 0.77268 0.77124 1.21314 1.21705 1.21348 1.21793 0.77445 1.01275 0.99694 0.92784 0.92477 0.92875 0.90434 0.93059 0.93562 0.90255 0.89380 0.89231 0.90223 0.91270 0.91564 0.90975 0.92446 0.91813 0.93207 0.96282 0.96020 0.78105 0.93456 0.91611 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.19 37.15 0.34 -0.86 16 2 C -0.08 -0.90 2.57 -90.62 -0.23 -1.14 16 3 C -0.15 -1.93 8.93 37.16 0.33 -1.60 16 4 C -0.13 -1.41 3.52 -27.88 -0.10 -1.51 16 5 C 0.51 7.65 7.42 -10.98 -0.08 7.57 16 6 O -0.53 -10.42 13.37 5.56 0.07 -10.35 16 7 N -0.61 -8.57 2.97 -172.53 -0.51 -9.08 16 8 C 0.11 1.04 5.87 -3.71 -0.02 1.02 16 9 C -0.13 -1.27 5.63 -26.61 -0.15 -1.42 16 10 C -0.08 -1.05 2.71 -90.58 -0.25 -1.29 16 11 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 12 C -0.15 -1.73 8.11 37.16 0.30 -1.42 16 13 C -0.10 -1.67 2.16 -90.30 -0.19 -1.87 16 14 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 15 C 0.16 3.26 5.19 -4.04 -0.02 3.24 16 16 N -0.73 -19.19 5.38 -59.91 -0.32 -19.52 16 17 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 18 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -29.29 13.06 55.49 0.72 -28.56 16 21 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.12 2.04 5.08 -3.51 -0.02 2.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.08 0.98 7.96 -51.93 -0.41 0.57 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.27 5.94 -51.93 -0.31 0.96 16 33 H 0.09 0.73 7.95 -51.93 -0.41 0.32 16 34 H 0.09 0.80 7.69 -51.93 -0.40 0.40 16 35 H 0.08 0.59 5.93 -51.93 -0.31 0.29 16 36 H 0.07 0.62 6.69 -51.93 -0.35 0.27 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.66 4.97 -51.93 -0.26 0.40 16 40 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 44 H 0.38 10.82 6.91 -40.82 -0.28 10.53 16 45 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 46 H 0.07 1.09 6.69 -51.93 -0.35 0.75 16 47 H 0.10 2.20 6.23 -51.93 -0.32 1.88 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -33.31 353.47 -8.35 -41.66 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.29 Total: 7.37 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.33 Total: -4.86 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.11 Total: -57.16 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.31 -8.35 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132601944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.185 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds