Wall clock time and date at job start Tue Mar 31 2020 06:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 C 1.53002 * 109.47412 * 120.00472 * 2 1 3 5 5 C 1.50695 * 109.47004 * 175.00111 * 4 2 1 6 6 O 1.21274 * 120.00413 * 0.27039 * 5 4 2 7 7 N 1.34784 * 119.99635 * 179.97438 * 5 4 2 8 8 C 1.46923 * 120.63216 * 359.97438 * 7 5 4 9 9 C 1.53188 * 108.77648 * 233.58504 * 8 7 5 10 10 C 1.53039 * 109.31224 * 305.36847 * 9 8 7 11 11 H 1.09007 * 109.45661 * 181.38561 * 10 9 8 12 12 C 1.52998 * 109.45776 * 301.35093 * 10 9 8 13 13 C 1.53034 * 109.54129 * 61.36238 * 10 9 8 14 14 H 1.09001 * 109.49985 * 58.58802 * 13 10 9 15 15 C 1.53002 * 109.49950 * 178.64863 * 13 10 9 16 16 N 1.46497 * 109.47496 * 185.00010 * 15 13 10 17 17 C 1.36933 * 120.00315 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99652 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00269 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99636 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99986 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47183 * 59.99544 * 21 19 17 23 23 H 1.48503 * 109.46674 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47044 * 299.99214 * 21 19 17 25 25 C 1.46927 * 120.62699 * 179.71634 * 7 5 4 26 26 H 1.08999 * 109.47188 * 299.99205 * 1 2 3 27 27 H 1.08996 * 109.47663 * 59.99703 * 1 2 3 28 28 H 1.09007 * 109.47044 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47001 * 240.00507 * 2 1 3 30 30 H 1.08996 * 109.47531 * 300.00909 * 3 2 1 31 31 H 1.09006 * 109.46731 * 60.00342 * 3 2 1 32 32 H 1.08997 * 109.47332 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47089 * 54.99859 * 4 2 1 34 34 H 1.09002 * 109.46787 * 295.00201 * 4 2 1 35 35 H 1.09000 * 109.58464 * 353.37419 * 8 7 5 36 36 H 1.09000 * 109.58587 * 113.79788 * 8 7 5 37 37 H 1.09005 * 109.49574 * 65.31581 * 9 8 7 38 38 H 1.08999 * 109.49514 * 185.37747 * 9 8 7 39 39 H 1.09001 * 109.46872 * 60.00721 * 12 10 9 40 40 H 1.08999 * 109.47220 * 180.02562 * 12 10 9 41 41 H 1.08996 * 109.47554 * 300.00772 * 12 10 9 42 42 H 1.08995 * 109.47158 * 305.00665 * 15 13 10 43 43 H 1.09002 * 109.46861 * 65.00171 * 15 13 10 44 44 H 0.97006 * 119.99400 * 359.97438 * 16 15 13 45 45 H 0.97005 * 119.99700 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.58608 * 246.19889 * 25 7 5 47 47 H 1.08993 * 109.58827 * 6.63371 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1887 6 8 4.1453 -0.3700 0.2424 7 7 4.2150 -1.4314 2.1893 8 6 3.4985 -1.9865 3.3457 9 6 4.1027 -1.4029 4.6267 10 6 5.6110 -1.6616 4.6384 11 1 6.0396 -1.2689 5.5606 12 6 5.8706 -3.1672 4.5564 13 6 6.2588 -0.9667 3.4387 14 1 6.0533 0.1029 3.4831 15 6 7.7710 -1.1978 3.4699 16 7 8.4040 -0.4351 2.3911 17 6 9.7617 -0.4873 2.2210 18 1 10.3660 -1.0905 2.8825 19 6 10.3616 0.2358 1.1992 20 7 9.6252 0.9712 0.3934 21 14 12.2138 0.1650 0.9677 22 1 12.6267 -1.2371 0.7054 23 1 12.6015 1.0186 -0.1841 24 1 12.8854 0.6571 2.1972 25 6 5.6787 -1.5499 2.1417 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6765 1.9564 -0.8898 31 1 1.6766 1.9563 0.8901 32 1 3.1299 1.4425 0.0005 33 1 1.6054 -1.7199 1.2950 34 1 1.7516 -0.1585 2.1369 35 1 2.4435 -1.7193 3.2845 36 1 3.6029 -3.0715 3.3538 37 1 3.9174 -0.3292 4.6600 38 1 3.6447 -1.8781 5.4942 39 1 5.4416 -3.5601 3.6346 40 1 6.9448 -3.3517 4.5652 41 1 5.4102 -3.6623 5.4113 42 1 8.1691 -0.8686 4.4297 43 1 7.9792 -2.2592 3.3351 44 1 7.8611 0.1063 1.7968 45 1 10.0443 1.4762 -0.3210 46 1 5.9576 -2.5999 2.0535 47 1 6.0626 -0.9945 1.2861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132601944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:27 Heat of formation + Delta-G solvation = -69.581123 kcal Electronic energy + Delta-G solvation = -23553.161973 eV Core-core repulsion = 20348.310594 eV Total energy + Delta-G solvation = -3204.851379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50783 -39.49892 -36.65393 -36.44530 -34.86534 -33.47581 -31.58969 -29.59376 -28.55548 -27.94047 -26.83209 -25.55126 -24.88515 -22.55955 -21.72623 -20.40712 -19.34891 -18.90866 -18.07377 -17.06689 -16.78898 -16.58525 -16.11479 -15.68422 -15.62285 -15.26449 -15.05800 -14.72169 -14.51749 -14.29161 -14.08635 -13.80118 -13.30962 -13.04976 -13.00899 -12.95285 -12.83726 -12.72183 -12.60728 -12.43036 -12.17524 -12.10795 -11.96044 -11.91451 -11.71618 -11.66590 -11.55619 -11.31322 -11.18908 -10.93211 -10.58881 -9.50683 -9.02462 -7.95926 -5.26765 1.43324 1.48029 1.54332 1.70745 2.07748 2.54130 3.36643 3.56890 3.73337 3.83297 3.85721 3.90385 4.02915 4.11879 4.19959 4.30608 4.36196 4.44425 4.54866 4.57566 4.67358 4.71546 4.72751 4.76431 4.79576 4.85346 4.86069 4.93292 4.99851 5.05970 5.10562 5.13154 5.20113 5.26081 5.30919 5.32785 5.41946 5.45417 5.46433 5.54374 5.60380 5.63203 6.24263 6.53545 7.29509 7.29825 8.06407 8.28758 9.27416 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016087 B = 0.004605 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.087239 B = 6079.003534 C = 7529.693873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.154 4.154 4 C -0.123 4.123 5 C 0.495 3.505 6 O -0.589 6.589 7 N -0.611 5.611 8 C 0.098 3.902 9 C -0.123 4.123 10 C -0.081 4.081 11 H 0.077 0.923 12 C -0.148 4.148 13 C -0.089 4.089 14 H 0.047 0.953 15 C 0.159 3.841 16 N -0.748 5.748 17 C -0.249 4.249 18 H 0.079 0.921 19 C -0.079 4.079 20 N -0.973 5.973 21 Si 0.978 3.022 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.274 1.274 25 C 0.129 3.871 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.112 0.888 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.022 0.978 43 H 0.029 0.971 44 H 0.369 0.631 45 H 0.250 0.750 46 H 0.068 0.932 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.436 -8.276 10.028 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 C -0.211 4.211 4 C -0.162 4.162 5 C 0.285 3.715 6 O -0.470 6.470 7 N -0.344 5.344 8 C -0.023 4.023 9 C -0.161 4.161 10 C -0.100 4.100 11 H 0.096 0.904 12 C -0.205 4.205 13 C -0.108 4.108 14 H 0.065 0.935 15 C 0.032 3.968 16 N -0.391 5.391 17 C -0.381 4.381 18 H 0.097 0.903 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.806 3.194 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.200 1.200 25 C 0.006 3.994 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.130 0.870 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.100 0.900 42 H 0.040 0.960 43 H 0.047 0.953 44 H 0.201 0.799 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -21.966 -8.110 9.597 25.306 hybrid contribution 1.599 0.685 -0.951 1.983 sum -20.367 -7.424 8.646 23.339 Atomic orbital electron populations 1.21785 0.92230 1.02827 1.02638 1.20875 0.97005 0.95563 0.96780 1.21932 1.00805 0.96614 1.01738 1.21846 0.88400 1.04661 1.01299 1.21715 0.92091 0.76381 0.81317 1.90716 1.71685 1.49017 1.35545 1.48338 1.06536 1.57669 1.21833 1.22160 0.97363 0.99227 0.83500 1.21946 0.94075 1.01595 0.98469 1.21073 0.96260 0.96457 0.96166 0.90447 1.21949 1.01600 0.94385 1.02591 1.21596 0.94271 0.99117 0.95841 0.93478 1.20874 0.91054 0.94467 0.90362 1.42683 1.04495 1.56200 1.35726 1.19650 0.84995 1.22533 1.10899 0.90319 1.25675 1.02730 1.00209 0.98458 1.69875 1.36107 1.35164 1.21171 0.85147 0.79691 0.77502 0.77036 1.20129 1.22268 1.20002 1.21375 0.80110 1.00221 0.97711 0.91195 0.92542 0.91171 0.93051 0.92739 0.91901 0.94701 0.85929 0.86473 0.86633 0.89465 0.92245 0.87014 0.92603 0.93627 0.89986 0.96015 0.95336 0.79906 0.94119 0.91344 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.19 71.98 0.66 -1.19 16 2 C -0.08 -1.76 2.57 -10.80 -0.03 -1.79 16 3 C -0.15 -3.94 8.93 71.98 0.64 -3.30 16 4 C -0.12 -2.27 3.52 29.85 0.11 -2.16 16 5 C 0.49 15.14 7.42 87.65 0.65 15.79 16 6 O -0.59 -25.36 13.37 -3.01 -0.04 -25.40 16 7 N -0.61 -16.78 2.97 -818.16 -2.43 -19.21 16 8 C 0.10 1.55 5.87 86.36 0.51 2.05 16 9 C -0.12 -1.93 5.63 30.67 0.17 -1.76 16 10 C -0.08 -1.81 2.71 -10.77 -0.03 -1.84 16 11 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 12 C -0.15 -2.93 8.11 71.98 0.58 -2.34 16 13 C -0.09 -3.00 2.16 -10.58 -0.02 -3.02 16 14 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 15 C 0.16 6.66 5.19 86.38 0.45 7.11 16 16 N -0.75 -41.20 5.38 -343.46 -1.85 -43.05 16 17 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16 18 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 19 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 20 N -0.97 -64.22 13.06 21.65 0.28 -63.94 16 21 Si 0.98 48.43 29.55 68.60 2.03 50.46 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 24 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 25 C 0.13 4.63 5.08 86.49 0.44 5.07 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.05 1.35 7.96 -2.38 -0.02 1.33 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.03 1.21 5.94 -2.39 -0.01 1.19 16 33 H 0.12 1.47 7.95 -2.38 -0.02 1.45 16 34 H 0.12 1.57 7.69 -2.39 -0.02 1.55 16 35 H 0.12 1.05 5.93 -2.39 -0.01 1.04 16 36 H 0.09 1.14 6.69 -2.39 -0.02 1.12 16 37 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.12 4.97 -2.39 -0.01 1.11 16 40 H 0.04 1.06 6.57 -2.39 -0.02 1.05 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.03 1.17 6.73 -2.39 -0.02 1.16 16 44 H 0.37 22.37 6.91 -92.70 -0.64 21.73 16 45 H 0.25 16.01 8.31 -92.70 -0.77 15.24 16 46 H 0.07 2.36 6.69 -2.39 -0.02 2.34 16 47 H 0.04 2.11 6.23 -2.39 -0.01 2.09 16 Total: -1.00 -80.00 353.47 3.73 -76.27 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.30 Total: 30.51 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 5.44 Total: -5.65 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -3.99 Total: -126.19 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.04 Total: -25.40 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -80.00 3.73 -76.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132601944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.691 kcal (2) G-P(sol) polarization free energy of solvation -80.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds