Wall clock time and date at job start Tue Mar 31 2020 06:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52997 * 109.46908 * 120.00167 * 2 1 3 5 5 C 1.50700 * 109.47382 * 174.99726 * 4 2 1 6 6 O 1.21283 * 119.99658 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00452 * 179.97438 * 5 4 2 8 8 C 1.47207 * 120.81153 * 0.14103 * 7 5 4 9 9 C 1.53195 * 108.85456 * 126.34215 * 8 7 5 10 10 C 1.53038 * 109.31078 * 54.64814 * 9 8 7 11 11 H 1.09003 * 109.46001 * 178.60988 * 10 9 8 12 12 C 1.53007 * 109.44952 * 58.65418 * 10 9 8 13 13 C 1.53035 * 109.54175 * 298.63655 * 10 9 8 14 14 H 1.09003 * 109.49576 * 301.41349 * 13 10 9 15 15 C 1.53005 * 109.49699 * 181.31740 * 13 10 9 16 16 N 1.46504 * 109.46902 * 175.16257 * 15 13 10 17 17 C 1.36939 * 119.99891 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00036 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99748 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00464 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99881 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47099 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47162 * 120.00226 * 21 19 17 24 24 H 1.48496 * 109.46988 * 239.99939 * 21 19 17 25 25 C 1.46926 * 120.63302 * 180.02562 * 7 5 4 26 26 H 1.09000 * 109.46699 * 300.00197 * 1 2 3 27 27 H 1.09001 * 109.46629 * 59.99691 * 1 2 3 28 28 H 1.08996 * 109.46789 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46699 * 239.99803 * 2 1 3 30 30 H 1.08997 * 109.46706 * 59.99984 * 3 2 1 31 31 H 1.08997 * 109.47168 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46811 * 299.99967 * 3 2 1 33 33 H 1.08998 * 109.47350 * 54.99622 * 4 2 1 34 34 H 1.09003 * 109.47457 * 294.99634 * 4 2 1 35 35 H 1.08996 * 109.53610 * 6.53712 * 8 7 5 36 36 H 1.08997 * 109.56315 * 246.16158 * 8 7 5 37 37 H 1.09002 * 109.49713 * 294.70061 * 9 8 7 38 38 H 1.09001 * 109.52547 * 174.62020 * 9 8 7 39 39 H 1.09003 * 109.46630 * 299.93659 * 12 10 9 40 40 H 1.08997 * 109.47103 * 59.93254 * 12 10 9 41 41 H 1.08996 * 109.46938 * 179.97438 * 12 10 9 42 42 H 1.09000 * 109.47319 * 295.15932 * 15 13 10 43 43 H 1.08995 * 109.47422 * 55.16582 * 15 13 10 44 44 H 0.97004 * 119.99900 * 359.97438 * 16 15 13 45 45 H 0.96993 * 120.00300 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.58861 * 113.81616 * 25 7 5 47 47 H 1.08996 * 109.58519 * 353.53507 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1889 6 8 4.1451 -0.3741 0.2404 7 7 4.2149 -1.4315 2.1895 8 6 3.5008 -1.9921 3.3482 9 6 3.9152 -3.4564 3.5240 10 6 5.4398 -3.5423 3.6253 11 1 5.7359 -4.5806 3.7752 12 6 5.9201 -2.6995 4.8086 13 6 6.0691 -3.0139 2.3342 14 1 5.7079 -3.5981 1.4878 15 6 7.5921 -3.1306 2.4235 16 7 8.1880 -2.7333 1.1454 17 6 9.5479 -2.7578 0.9871 18 1 10.1812 -3.0696 1.8044 19 6 10.1125 -2.3819 -0.2240 20 7 9.3408 -2.0014 -1.2200 21 14 11.9677 -2.4146 -0.4398 22 1 12.6046 -2.8747 0.8203 23 1 12.3215 -3.3446 -1.5422 24 1 12.4519 -1.0499 -0.7690 25 6 5.6792 -1.5441 2.1452 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6053 -1.7198 1.2952 34 1 1.7517 -0.1584 2.1370 35 1 2.4259 -1.9346 3.1766 36 1 3.7604 -1.4288 4.2445 37 1 3.5743 -4.0365 2.6664 38 1 3.4670 -3.8551 4.4342 39 1 5.6245 -1.6611 4.6587 40 1 5.4720 -3.0757 5.7282 41 1 7.0059 -2.7608 4.8812 42 1 7.9608 -2.4780 3.2148 43 1 7.8650 -4.1620 2.6465 44 1 7.6191 -2.4536 0.4112 45 1 9.7352 -1.7390 -2.0664 46 1 6.1162 -0.9443 2.9435 47 1 6.0438 -1.1903 1.1809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132601945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:30 Heat of formation + Delta-G solvation = -48.138214 kcal Electronic energy + Delta-G solvation = -23515.926384 eV Core-core repulsion = 20312.004840 eV Total energy + Delta-G solvation = -3203.921545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.35510 -38.32300 -35.52902 -34.89301 -33.45434 -31.83476 -29.93223 -28.62388 -27.38868 -27.12521 -25.24013 -24.49375 -23.11578 -21.16580 -20.70389 -19.30850 -18.04136 -17.18373 -16.77831 -16.00781 -15.46121 -15.05424 -14.89135 -14.64066 -14.15180 -13.94052 -13.65898 -13.49429 -13.29456 -12.98348 -12.69543 -12.47753 -12.34729 -12.19810 -11.96591 -11.88051 -11.60740 -11.23343 -11.12609 -10.99105 -10.94452 -10.83304 -10.77277 -10.70105 -10.56209 -10.22872 -10.13594 -9.88796 -9.58264 -9.37284 -8.81251 -8.34863 -6.84312 -5.67969 -2.97634 2.84874 3.16161 3.48097 3.52919 3.55818 4.53693 4.62982 4.67491 4.76903 4.83187 4.89309 4.93738 5.16767 5.23237 5.31140 5.35603 5.38524 5.48114 5.53344 5.60779 5.64737 5.65059 5.69578 5.73633 5.82719 5.85155 5.90440 5.94105 5.99138 6.04342 6.09202 6.20689 6.32371 6.35620 6.38207 6.40628 6.47575 6.64928 6.73967 6.82829 6.94038 7.62487 7.76606 8.43102 8.49755 9.60746 10.19274 10.53397 11.54416 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.004550 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.538582 B = 6152.145703 C = 7596.151035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.153 4.153 4 C -0.134 4.134 5 C 0.508 3.492 6 O -0.527 6.527 7 N -0.613 5.613 8 C 0.106 3.894 9 C -0.129 4.129 10 C -0.085 4.085 11 H 0.072 0.928 12 C -0.153 4.153 13 C -0.102 4.102 14 H 0.072 0.928 15 C 0.161 3.839 16 N -0.733 5.733 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.929 5.929 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.119 3.881 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.022 0.978 43 H 0.020 0.980 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.065 0.935 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.404 0.685 11.303 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.211 4.211 4 C -0.174 4.174 5 C 0.296 3.704 6 O -0.403 6.403 7 N -0.347 5.347 8 C -0.017 4.017 9 C -0.167 4.167 10 C -0.104 4.104 11 H 0.091 0.909 12 C -0.210 4.210 13 C -0.121 4.121 14 H 0.091 0.909 15 C 0.033 3.967 16 N -0.378 5.378 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.003 4.003 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.904 0.929 10.822 21.802 hybrid contribution 0.843 -0.070 -0.299 0.897 sum -18.061 0.859 10.524 20.921 Atomic orbital electron populations 1.21859 0.95207 1.01518 1.01787 1.20880 0.94759 0.97063 0.97456 1.21956 1.03536 0.94858 1.00701 1.21784 0.92613 1.02445 1.00576 1.20679 0.89964 0.77811 0.81940 1.90732 1.70115 1.46948 1.32534 1.48280 1.07972 1.57599 1.20885 1.21785 0.96501 0.94449 0.88945 1.21941 0.96704 0.96004 1.02077 1.21070 0.93987 1.00083 0.95256 0.90921 1.21985 1.02016 1.00059 0.96896 1.21682 0.97289 0.95949 0.97193 0.90942 1.20678 0.88789 0.97133 0.90142 1.42436 1.04548 1.80346 1.10461 1.19245 0.83222 1.37537 0.97209 0.91218 1.24753 0.97645 1.02232 0.96292 1.69686 1.33468 1.51133 1.03469 0.86147 0.85634 0.77165 0.77426 1.20608 1.21920 1.21893 1.21710 0.77832 0.96332 1.04384 0.92833 0.92468 0.92812 0.90298 0.93622 0.90415 0.93047 0.89279 0.89340 0.90245 0.91230 0.91559 0.90946 0.92446 0.93194 0.91808 0.95991 0.96262 0.78105 0.93553 0.91638 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 37.16 0.34 -0.87 16 2 C -0.08 -0.91 2.57 -90.62 -0.23 -1.15 16 3 C -0.15 -1.83 8.93 37.16 0.33 -1.50 16 4 C -0.13 -1.41 3.53 -27.88 -0.10 -1.51 16 5 C 0.51 7.67 7.42 -10.99 -0.08 7.59 16 6 O -0.53 -10.44 13.38 5.55 0.07 -10.37 16 7 N -0.61 -8.58 2.98 -172.52 -0.51 -9.09 16 8 C 0.11 1.04 5.88 -3.56 -0.02 1.02 16 9 C -0.13 -1.27 5.63 -26.61 -0.15 -1.42 16 10 C -0.08 -1.05 2.71 -90.58 -0.25 -1.29 16 11 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 12 C -0.15 -1.72 8.11 37.16 0.30 -1.42 16 13 C -0.10 -1.68 2.15 -90.48 -0.19 -1.87 16 14 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 15 C 0.16 3.26 5.19 -4.04 -0.02 3.24 16 16 N -0.73 -19.20 5.38 -59.91 -0.32 -19.52 16 17 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -29.31 13.06 55.49 0.72 -28.59 16 21 Si 0.90 23.04 29.55 -169.99 -5.02 18.01 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 C 0.12 2.04 5.04 -3.69 -0.02 2.02 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 1.03 7.96 -51.93 -0.41 0.62 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.18 5.95 -51.93 -0.31 0.87 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.78 7.70 -51.93 -0.40 0.38 16 34 H 0.09 0.75 7.95 -51.93 -0.41 0.34 16 35 H 0.08 0.59 5.97 -51.93 -0.31 0.28 16 36 H 0.07 0.62 6.69 -51.93 -0.35 0.28 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.66 4.98 -51.93 -0.26 0.40 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 42 H 0.02 0.45 6.72 -51.93 -0.35 0.10 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.38 10.82 6.89 -40.82 -0.28 10.54 16 45 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 46 H 0.07 1.09 6.69 -51.93 -0.35 0.74 16 47 H 0.10 2.20 6.20 -51.93 -0.32 1.88 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -33.41 353.50 -8.36 -41.76 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -8.29 Total: 7.20 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.33 Total: -4.74 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.11 Total: -57.20 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.41 -8.36 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132601945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.373 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds