Wall clock time and date at job start Tue Mar 31 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47271 * 2 1 4 4 C 1.53001 * 109.47241 * 120.00233 * 2 1 3 5 5 C 1.50698 * 109.47063 * 175.00194 * 4 2 1 6 6 O 1.21282 * 120.00035 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99707 * 179.97438 * 5 4 2 8 8 C 1.46921 * 120.63351 * 359.97438 * 7 5 4 9 9 C 1.53191 * 108.77411 * 233.63167 * 8 7 5 10 10 C 1.53043 * 109.31132 * 305.35957 * 9 8 7 11 11 H 1.09002 * 109.46131 * 301.34824 * 10 9 8 12 12 C 1.53001 * 109.44748 * 181.37889 * 10 9 8 13 13 C 1.53046 * 109.53475 * 61.36818 * 10 9 8 14 14 H 1.08995 * 109.49919 * 58.61932 * 13 10 9 15 15 C 1.53006 * 109.49435 * 178.68408 * 13 10 9 16 16 N 1.46495 * 109.46960 * 185.00197 * 15 13 10 17 17 C 1.36936 * 119.99962 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00154 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00066 * 179.97438 * 17 16 15 20 20 N 1.31627 * 119.99844 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47214 * 89.99987 * 21 19 17 23 23 H 1.48507 * 109.47286 * 209.99878 * 21 19 17 24 24 H 1.48499 * 109.47118 * 330.00085 * 21 19 17 25 25 C 1.46925 * 120.62854 * 179.97438 * 7 5 4 26 26 H 1.09002 * 109.47180 * 299.99694 * 1 2 3 27 27 H 1.08996 * 109.47473 * 60.00028 * 1 2 3 28 28 H 1.09000 * 109.47172 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47180 * 240.00306 * 2 1 3 30 30 H 1.09002 * 109.47584 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47245 * 300.00600 * 3 2 1 32 32 H 1.09002 * 109.46768 * 60.00054 * 3 2 1 33 33 H 1.08996 * 109.46929 * 54.99555 * 4 2 1 34 34 H 1.09003 * 109.46629 * 294.99725 * 4 2 1 35 35 H 1.09002 * 109.58756 * 353.41101 * 8 7 5 36 36 H 1.09001 * 109.59125 * 113.69997 * 8 7 5 37 37 H 1.09004 * 109.49733 * 185.41012 * 9 8 7 38 38 H 1.08994 * 109.50132 * 65.31225 * 9 8 7 39 39 H 1.08992 * 109.47480 * 299.96774 * 12 10 9 40 40 H 1.08996 * 109.47171 * 59.97125 * 12 10 9 41 41 H 1.09008 * 109.46811 * 179.97438 * 12 10 9 42 42 H 1.09001 * 109.46991 * 304.99842 * 15 13 10 43 43 H 1.09000 * 109.47170 * 64.99839 * 15 13 10 44 44 H 0.97002 * 120.00280 * 359.97438 * 16 15 13 45 45 H 0.96999 * 119.99556 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.59222 * 6.58108 * 25 7 5 47 47 H 1.09006 * 109.70276 * 246.22737 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1888 6 8 4.1449 -0.3747 0.2399 7 7 4.2149 -1.4313 2.1894 8 6 3.4984 -1.9864 3.3458 9 6 4.1019 -1.4018 4.6267 10 6 5.6104 -1.6597 4.6391 11 1 5.7959 -2.7322 4.5813 12 6 6.2111 -1.1073 5.9333 13 6 6.2582 -0.9648 3.4391 14 1 6.0525 0.1046 3.4833 15 6 7.7704 -1.1959 3.4705 16 7 8.4033 -0.4333 2.3916 17 6 9.7610 -0.4854 2.2216 18 1 10.3653 -1.0884 2.8830 19 6 10.3607 0.2368 1.1989 20 7 9.6242 0.9713 0.3924 21 14 12.2129 0.1662 0.9674 22 1 12.5545 -0.9469 0.0457 23 1 12.6891 1.4496 0.3915 24 1 12.8677 -0.0602 2.2809 25 6 5.6791 -1.5448 2.1446 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6053 -1.7198 1.2951 34 1 1.7516 -0.1583 2.1369 35 1 2.4433 -1.7198 3.2843 36 1 3.6014 -3.0715 3.3530 37 1 3.6444 -1.8773 5.4944 38 1 3.9161 -0.3283 4.6595 39 1 6.0256 -0.0349 5.9912 40 1 5.7502 -1.6024 6.7880 41 1 7.2855 -1.2913 5.9426 42 1 8.1684 -0.8663 4.4302 43 1 7.9787 -2.2573 3.3358 44 1 7.8605 0.1080 1.7972 45 1 10.0433 1.4762 -0.3220 46 1 6.0629 -0.9870 1.2904 47 1 5.9638 -2.5932 2.0541 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132601946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:33 Heat of formation + Delta-G solvation = -51.105724 kcal Electronic energy + Delta-G solvation = -23425.097855 eV Core-core repulsion = 20221.047629 eV Total energy + Delta-G solvation = -3204.050226 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.25610 -38.17902 -35.53962 -34.93066 -33.63987 -31.84997 -29.90608 -28.96199 -27.50532 -27.09328 -25.31335 -23.27958 -23.14286 -21.19704 -20.68491 -19.63931 -18.74898 -17.15222 -16.77515 -15.96844 -15.56758 -14.81993 -14.62606 -14.39144 -14.16529 -13.89034 -13.82045 -13.40926 -13.17482 -13.02952 -12.71980 -12.53166 -12.28893 -12.25415 -11.93452 -11.81903 -11.69149 -11.51175 -11.09918 -10.96084 -10.89511 -10.83537 -10.75914 -10.68369 -10.53545 -10.23568 -10.11788 -9.90153 -9.57554 -9.37832 -8.80581 -8.39521 -6.83780 -5.67699 -2.97233 2.84208 3.16073 3.48485 3.52907 3.55191 4.53601 4.62721 4.67620 4.75742 4.83873 4.88972 4.92199 5.15638 5.21815 5.30488 5.37961 5.40396 5.47804 5.55414 5.64110 5.67183 5.69678 5.70285 5.76695 5.84144 5.85365 5.91075 5.94296 5.99839 6.05039 6.10829 6.22288 6.27908 6.32869 6.35952 6.48273 6.51947 6.64161 6.73297 6.85863 6.94056 7.61577 7.76266 8.42464 8.50114 9.60995 10.19619 10.53739 11.54636 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.004589 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.996933 B = 6099.718507 C = 7577.632295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.154 4.154 4 C -0.134 4.134 5 C 0.508 3.492 6 O -0.527 6.527 7 N -0.614 5.614 8 C 0.107 3.893 9 C -0.129 4.129 10 C -0.084 4.084 11 H 0.070 0.930 12 C -0.148 4.148 13 C -0.101 4.101 14 H 0.073 0.927 15 C 0.159 3.841 16 N -0.733 5.733 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.929 5.929 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.283 1.283 25 C 0.119 3.881 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.026 0.974 43 H 0.017 0.983 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.103 0.897 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.970 -5.757 7.832 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.212 4.212 4 C -0.174 4.174 5 C 0.296 3.704 6 O -0.403 6.403 7 N -0.348 5.348 8 C -0.016 4.016 9 C -0.167 4.167 10 C -0.103 4.103 11 H 0.089 0.911 12 C -0.205 4.205 13 C -0.121 4.121 14 H 0.091 0.909 15 C 0.031 3.969 16 N -0.377 5.377 17 C -0.373 4.373 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.002 4.002 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.035 0.965 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.121 0.879 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.472 -5.540 7.330 21.531 hybrid contribution 0.857 0.099 -0.206 0.887 sum -18.615 -5.441 7.124 20.661 Atomic orbital electron populations 1.21858 0.95220 1.01450 1.01848 1.20875 0.94735 0.97148 0.97320 1.21967 1.03691 0.94743 1.00761 1.21790 0.92575 1.02412 1.00669 1.20693 0.89994 0.77517 0.82203 1.90730 1.70120 1.46654 1.32805 1.48227 1.07946 1.58016 1.20590 1.21715 0.96162 0.98145 0.85600 1.21983 0.96249 1.01664 0.96803 1.21090 0.93807 1.00217 0.95236 0.91143 1.21881 1.01641 1.00895 0.96080 1.21710 0.96613 1.00328 0.93402 0.90876 1.20723 0.88648 0.95008 0.92567 1.42417 1.05031 1.55713 1.34585 1.19200 0.83627 1.23283 1.11163 0.91281 1.24751 0.97727 1.00034 0.98388 1.69681 1.34014 1.33769 1.20310 0.86216 0.85609 0.76893 0.77618 1.21765 1.21811 1.20832 1.21701 0.77458 1.01244 0.99840 0.92786 0.92467 0.92870 0.90422 0.90278 0.93053 0.93547 0.89356 0.89228 0.90116 0.91523 0.90965 0.91511 0.92803 0.93268 0.91637 0.95593 0.96480 0.78115 0.93513 0.87881 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.19 37.16 0.34 -0.86 16 2 C -0.08 -0.91 2.57 -90.62 -0.23 -1.14 16 3 C -0.15 -1.93 8.93 37.16 0.33 -1.60 16 4 C -0.13 -1.41 3.52 -27.88 -0.10 -1.51 16 5 C 0.51 7.68 7.41 -10.99 -0.08 7.59 16 6 O -0.53 -10.44 13.38 5.56 0.07 -10.36 16 7 N -0.61 -8.62 2.97 -172.75 -0.51 -9.13 16 8 C 0.11 1.05 6.34 -3.71 -0.02 1.02 16 9 C -0.13 -1.27 5.36 -26.61 -0.14 -1.41 16 10 C -0.08 -1.04 2.23 -90.57 -0.20 -1.24 16 11 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 12 C -0.15 -1.75 8.82 37.16 0.33 -1.42 16 13 C -0.10 -1.67 1.92 -90.48 -0.17 -1.84 16 14 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 15 C 0.16 3.22 5.41 -4.04 -0.02 3.19 16 16 N -0.73 -19.16 5.38 -59.91 -0.32 -19.48 16 17 C -0.24 -6.95 9.99 -15.06 -0.15 -7.11 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -29.28 13.06 55.49 0.72 -28.55 16 21 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.12 2.05 5.52 -3.70 -0.02 2.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.99 7.95 -51.93 -0.41 0.57 16 30 H 0.08 1.27 5.95 -51.93 -0.31 0.96 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.73 7.94 -51.93 -0.41 0.32 16 34 H 0.09 0.79 7.69 -51.93 -0.40 0.39 16 35 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.85 6.29 -51.92 -0.33 0.53 16 42 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 10.80 6.90 -40.82 -0.28 10.52 16 45 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 46 H 0.10 2.23 6.22 -51.93 -0.32 1.90 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -33.34 359.53 -8.44 -41.78 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.56 Total: 7.08 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -0.24 Total: -4.76 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.11 Total: -57.16 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.34 -8.44 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132601946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.326 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds