Wall clock time and date at job start Tue Mar 31 2020 06:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46047 * 2 1 4 4 C 1.53032 * 109.44806 * 240.03243 * 2 1 3 5 5 C 1.53189 * 109.31781 * 301.35358 * 4 2 1 6 6 N 1.46930 * 108.77397 * 305.36762 * 5 4 2 7 7 C 1.34776 * 120.63013 * 233.62587 * 6 5 4 8 8 O 1.21284 * 119.99902 * 174.16987 * 7 6 5 9 9 C 1.50706 * 120.00033 * 354.17618 * 7 6 5 10 10 C 1.52993 * 109.46905 * 187.69986 * 9 7 6 11 11 C 1.52996 * 109.46713 * 307.69988 * 9 7 6 12 12 C 1.53000 * 109.47262 * 67.69815 * 9 7 6 13 13 C 1.46927 * 118.74067 * 53.60534 * 6 5 4 14 14 C 1.53043 * 109.45758 * 119.97130 * 2 1 3 15 15 H 1.09004 * 109.49571 * 178.59039 * 14 2 1 16 16 C 1.53000 * 109.49849 * 298.69214 * 14 2 1 17 17 N 1.46503 * 109.46958 * 185.00008 * 16 14 2 18 18 C 1.36928 * 119.99830 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00563 * 0.02562 * 18 17 16 20 20 C 1.38822 * 120.00119 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99590 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00217 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47108 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46874 * 120.00175 * 22 20 18 25 25 H 1.48501 * 109.46922 * 239.99910 * 22 20 18 26 26 H 1.09002 * 109.46878 * 300.00187 * 1 2 3 27 27 H 1.08997 * 109.46860 * 59.99981 * 1 2 3 28 28 H 1.09002 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.50161 * 61.30762 * 4 2 1 30 30 H 1.09002 * 109.49876 * 181.40173 * 4 2 1 31 31 H 1.08996 * 109.59543 * 185.57634 * 5 4 2 32 32 H 1.09004 * 109.70482 * 65.22176 * 5 4 2 33 33 H 1.09007 * 109.47532 * 59.99717 * 10 9 7 34 34 H 1.09007 * 109.47264 * 179.97438 * 10 9 7 35 35 H 1.09003 * 109.47742 * 299.99968 * 10 9 7 36 36 H 1.08995 * 109.47413 * 70.30102 * 11 9 7 37 37 H 1.09007 * 109.46973 * 190.29861 * 11 9 7 38 38 H 1.09005 * 109.47114 * 310.29566 * 11 9 7 39 39 H 1.09003 * 109.46775 * 72.25592 * 12 9 7 40 40 H 1.08994 * 109.47374 * 192.25950 * 12 9 7 41 41 H 1.08996 * 109.47158 * 312.26048 * 12 9 7 42 42 H 1.09001 * 109.58804 * 186.60760 * 13 6 5 43 43 H 1.08999 * 109.58516 * 66.17685 * 13 6 5 44 44 H 1.08999 * 109.46983 * 304.99904 * 16 14 2 45 45 H 1.08988 * 109.47285 * 65.00078 * 16 14 2 46 46 H 0.96998 * 120.00001 * 0.02562 * 17 16 14 47 47 H 0.97001 * 119.99784 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7208 -1.2501 5 6 1.4990 -2.1541 -1.2643 6 7 1.8619 -2.8089 -0.0001 7 6 2.5155 -3.9876 -0.0002 8 8 2.9028 -4.4663 1.0447 9 6 2.7652 -4.7107 -1.2987 10 6 3.3453 -6.0961 -1.0075 11 6 1.4471 -4.8595 -2.0611 12 6 3.7567 -3.9103 -2.1457 13 6 1.4992 -2.1542 1.2642 14 6 2.0398 -0.7209 1.2501 15 1 3.1296 -0.7432 1.2381 16 6 1.5571 0.0193 2.4990 17 7 2.1425 -0.6001 3.6906 18 6 1.8521 -0.1035 4.9332 19 1 1.1912 0.7446 5.0349 20 6 2.4073 -0.6900 6.0623 21 7 3.2132 -1.7233 5.9383 22 14 2.0106 -0.0130 7.7575 23 1 1.0868 1.1421 7.6254 24 1 1.3650 -1.0716 8.5746 25 1 3.2642 0.4283 8.4200 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6956 -0.1934 -2.1398 30 1 3.1293 -0.7431 -1.2385 31 1 1.9373 -2.7018 -2.0985 32 1 0.4141 -2.1367 -1.3685 33 1 2.6389 -6.6663 -0.4041 34 1 3.5255 -6.6193 -1.9467 35 1 4.2843 -5.9901 -0.4643 36 1 1.1271 -3.8841 -2.4273 37 1 1.5895 -5.5353 -2.9044 38 1 0.6858 -5.2652 -1.3948 39 1 4.7525 -3.9874 -1.7090 40 1 3.7728 -4.3090 -3.1599 41 1 3.4513 -2.8644 -2.1712 42 1 1.9378 -2.7019 2.0983 43 1 0.4143 -2.1345 1.3674 44 1 1.8646 1.0636 2.4441 45 1 0.4702 -0.0368 2.5572 46 1 2.7365 -1.3615 3.5993 47 1 3.6009 -2.1334 6.7273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133253575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:36 Heat of formation + Delta-G solvation = -26.760976 kcal Electronic energy + Delta-G solvation = -24099.609159 eV Core-core repulsion = 20896.614601 eV Total energy + Delta-G solvation = -3202.994558 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.78685 -38.31028 -35.93400 -34.71058 -33.36694 -31.80643 -29.84636 -27.74440 -27.48768 -27.39494 -25.60239 -24.87445 -23.10918 -21.94206 -21.09638 -19.16694 -18.04046 -17.01896 -16.50249 -16.04760 -15.21535 -15.13263 -14.92005 -14.50029 -14.08690 -13.98758 -13.80544 -13.43852 -13.04772 -12.88848 -12.61148 -12.52586 -12.41821 -12.27873 -12.12259 -11.83682 -11.68664 -11.61635 -11.17402 -11.08455 -11.02118 -10.90564 -10.80555 -10.72808 -10.43656 -10.20088 -10.10708 -9.87453 -9.57591 -9.30397 -8.80783 -8.33388 -6.83790 -5.67445 -2.97048 2.84501 3.16688 3.48344 3.53098 3.56054 4.36161 4.62257 4.63418 4.71027 4.75418 4.88941 4.92382 5.09886 5.21552 5.29514 5.31678 5.33992 5.43846 5.49873 5.59445 5.65119 5.66246 5.69980 5.72143 5.74503 5.80877 5.86163 5.93618 5.95651 6.01609 6.05002 6.09237 6.21346 6.23894 6.36745 6.39193 6.41657 6.64455 6.75556 6.83627 6.94895 7.63602 7.76930 8.42472 8.50260 9.61218 10.19969 10.54114 11.54963 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019796 B = 0.004712 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.117429 B = 5940.391448 C = 6980.060689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.131 4.131 5 C 0.085 3.915 6 N -0.608 5.608 7 C 0.518 3.482 8 O -0.529 6.529 9 C -0.086 4.086 10 C -0.127 4.127 11 C -0.156 4.156 12 C -0.153 4.153 13 C 0.119 3.881 14 C -0.101 4.101 15 H 0.072 0.928 16 C 0.161 3.839 17 N -0.733 5.733 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.929 5.929 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.769 -2.579 -22.743 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.169 4.169 5 C -0.037 4.037 6 N -0.341 5.341 7 C 0.305 3.695 8 O -0.405 6.405 9 C -0.089 4.089 10 C -0.184 4.184 11 C -0.213 4.213 12 C -0.210 4.210 13 C -0.003 4.003 14 C -0.121 4.121 15 H 0.091 0.909 16 C 0.033 3.967 17 N -0.378 5.378 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.084 0.916 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.637 -2.748 -22.029 22.496 hybrid contribution -0.005 0.215 0.992 1.016 sum -3.642 -2.533 -21.037 21.500 Atomic orbital electron populations 1.21984 0.95283 1.01953 1.01722 1.21061 0.95971 0.99311 0.94000 0.90945 1.21981 1.01133 0.95340 0.98463 1.22391 1.00366 0.93813 0.87154 1.48086 1.57607 1.21053 1.07363 1.20559 0.77285 0.80844 0.90812 1.90757 1.49745 1.66315 1.33652 1.20763 0.97414 0.97061 0.93694 1.21661 1.01859 0.93718 1.01179 1.22275 0.95683 1.03101 1.00195 1.22127 0.99071 1.00269 0.99503 1.21727 0.99631 0.92981 0.85918 1.21674 1.00817 0.94542 0.95057 0.90925 1.20676 0.95915 0.94687 0.85458 1.42435 1.56813 1.37715 1.00824 1.19247 1.23159 1.10963 0.83816 0.91221 1.24758 1.00064 0.98336 0.97791 1.69693 1.35429 1.24285 1.28365 0.86146 0.77375 0.77950 0.84896 1.20603 1.21903 1.21921 0.91825 0.93207 0.92448 0.90958 0.91545 0.87908 0.91377 0.92105 0.92285 0.91674 0.90749 0.91665 0.92102 0.91775 0.91477 0.91088 0.88055 0.91588 0.96275 0.96007 0.78093 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.11 37.16 0.30 -1.43 16 2 C -0.08 -1.05 2.71 -90.58 -0.25 -1.29 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.31 5.47 -26.62 -0.15 -1.45 16 5 C 0.09 0.85 3.51 -3.71 -0.01 0.84 16 6 N -0.61 -8.68 2.96 -172.76 -0.51 -9.19 16 7 C 0.52 8.16 6.45 -10.98 -0.07 8.09 16 8 O -0.53 -11.07 15.40 5.55 0.09 -10.99 16 9 C -0.09 -0.96 0.75 -155.66 -0.12 -1.07 16 10 C -0.13 -1.43 7.75 37.15 0.29 -1.14 16 11 C -0.16 -1.33 7.97 37.16 0.30 -1.03 16 12 C -0.15 -1.38 8.10 37.16 0.30 -1.08 16 13 C 0.12 2.06 5.06 -3.71 -0.02 2.05 16 14 C -0.10 -1.69 2.15 -90.50 -0.19 -1.89 16 15 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 16 C 0.16 3.29 5.19 -4.04 -0.02 3.26 16 17 N -0.73 -19.31 5.38 -59.91 -0.32 -19.63 16 18 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -29.47 13.06 55.49 0.72 -28.74 16 22 Si 0.90 23.11 29.55 -169.99 -5.02 18.08 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H 0.06 0.80 6.58 -51.93 -0.34 0.46 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.66 4.98 -51.93 -0.26 0.40 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.71 8.00 -51.93 -0.42 0.29 16 31 H 0.10 0.83 2.56 -51.93 -0.13 0.70 16 32 H 0.07 0.62 6.68 -51.93 -0.35 0.27 16 33 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 34 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.06 0.83 8.02 -51.93 -0.42 0.41 16 36 H 0.07 0.54 4.71 -51.93 -0.24 0.29 16 37 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 38 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 41 H 0.07 0.61 4.96 -51.93 -0.26 0.35 16 42 H 0.10 2.23 6.21 -51.93 -0.32 1.90 16 43 H 0.07 1.11 6.69 -51.93 -0.35 0.76 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.02 0.45 6.73 -51.94 -0.35 0.10 16 46 H 0.38 10.91 6.90 -40.82 -0.28 10.63 16 47 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -34.09 344.91 -7.64 -41.72 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.90 Total: 7.31 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 0.12 Total: -3.76 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.11 Total: -57.56 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.09 -7.64 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133253575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.960 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds