Wall clock time and date at job start Tue Mar 31 2020 06:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.45892 * 2 1 4 4 C 1.53035 * 109.45942 * 119.98236 * 2 1 3 5 5 C 1.53184 * 109.31882 * 58.64029 * 4 2 1 6 6 N 1.46928 * 108.77500 * 54.63496 * 5 4 2 7 7 C 1.34774 * 120.63241 * 126.37236 * 6 5 4 8 8 O 1.21284 * 120.00299 * 185.78598 * 7 6 5 9 9 C 1.50709 * 119.99790 * 5.50478 * 7 6 5 10 10 C 1.53002 * 109.46647 * 172.63869 * 9 7 6 11 11 C 1.52995 * 109.47094 * 292.64109 * 9 7 6 12 12 C 1.53001 * 109.46669 * 52.64537 * 9 7 6 13 13 C 1.46929 * 118.73791 * 306.64506 * 6 5 4 14 14 C 1.52759 * 109.00649 * 53.30904 * 13 6 5 15 15 H 1.09003 * 109.38694 * 65.51526 * 14 13 6 16 16 C 1.52998 * 109.56363 * 185.54916 * 14 13 6 17 17 N 1.46497 * 109.47394 * 294.96742 * 16 14 13 18 18 C 1.36937 * 120.00144 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99930 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00162 * 179.97438 * 18 17 16 21 21 N 1.31615 * 119.99959 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00139 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47206 * 90.00110 * 22 20 18 24 24 H 1.48496 * 109.47108 * 210.00609 * 22 20 18 25 25 H 1.48505 * 109.47083 * 330.00032 * 22 20 18 26 26 H 1.08998 * 109.47635 * 300.01927 * 1 2 3 27 27 H 1.09003 * 109.47185 * 60.02513 * 1 2 3 28 28 H 1.09007 * 109.47142 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.49606 * 298.68684 * 4 2 1 30 30 H 1.08998 * 109.52693 * 178.61310 * 4 2 1 31 31 H 1.08999 * 109.58515 * 294.85211 * 5 4 2 32 32 H 1.09001 * 109.71069 * 174.49123 * 5 4 2 33 33 H 1.09000 * 109.46877 * 60.00869 * 10 9 7 34 34 H 1.09007 * 109.46470 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47758 * 300.00380 * 10 9 7 36 36 H 1.08999 * 109.47288 * 47.34663 * 11 9 7 37 37 H 1.09004 * 109.46714 * 167.34533 * 11 9 7 38 38 H 1.09002 * 109.47349 * 287.34240 * 11 9 7 39 39 H 1.09000 * 109.47456 * 50.94370 * 12 9 7 40 40 H 1.09001 * 109.46562 * 170.94211 * 12 9 7 41 41 H 1.09002 * 109.46882 * 290.94212 * 12 9 7 42 42 H 1.09000 * 109.58511 * 173.14462 * 13 6 5 43 43 H 1.08994 * 109.58607 * 293.57061 * 13 6 5 44 44 H 1.09002 * 109.47022 * 54.96690 * 16 14 13 45 45 H 1.09008 * 109.47232 * 174.96276 * 16 14 13 46 46 H 0.96999 * 119.99984 * 359.97438 * 17 16 14 47 47 H 0.97002 * 120.00454 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7211 1.2498 5 6 1.4993 -2.1543 1.2639 6 7 1.8620 -2.8089 -0.0005 7 6 2.5156 -3.9876 -0.0008 8 8 2.9020 -4.4665 -1.0459 9 6 2.7719 -4.7073 1.2983 10 6 3.3585 -6.0903 1.0079 11 6 3.7612 -3.9006 2.1417 12 6 1.4563 -4.8619 2.0638 13 6 1.5039 -2.1512 -1.2646 14 6 2.0395 -0.7207 -1.2503 15 1 3.1293 -0.7425 -1.2389 16 6 1.5566 0.0197 -2.4990 17 7 2.1418 -0.5994 -3.6908 18 6 1.8504 -0.1032 -4.9334 19 1 1.1894 0.7449 -5.0348 20 6 2.4053 -0.6895 -6.0626 21 7 3.2112 -1.7227 -5.9391 22 14 2.0083 -0.0122 -7.7576 23 1 2.9995 1.0332 -8.1176 24 1 2.0631 -1.1109 -8.7551 25 1 0.6463 0.5796 -7.7476 26 1 -0.3634 0.5141 0.8898 27 1 -0.3634 0.5135 -0.8902 28 1 -0.3634 -1.0277 0.0005 29 1 1.6959 -0.1938 2.1398 30 1 3.1295 -0.7433 1.2386 31 1 0.4144 -2.1347 1.3671 32 1 1.9358 -2.7037 2.0981 33 1 4.2958 -5.9802 0.4625 34 1 3.5434 -6.6111 1.9475 35 1 2.6538 -6.6650 0.4069 36 1 3.4543 -2.8549 2.1606 37 1 3.7763 -4.2932 3.1585 38 1 4.7577 -3.9790 1.7071 39 1 0.7016 -5.2931 1.4061 40 1 1.6094 -5.5182 2.9205 41 1 1.1206 -3.8844 2.4103 42 1 1.9456 -2.6970 -2.0984 43 1 0.4194 -2.1313 -1.3717 44 1 0.4696 -0.0364 -2.5571 45 1 1.8641 1.0641 -2.4439 46 1 2.7357 -1.3609 -3.5998 47 1 3.5987 -2.1328 -6.7281 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133253576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:38 Heat of formation + Delta-G solvation = -26.498146 kcal Electronic energy + Delta-G solvation = -24101.612726 eV Core-core repulsion = 20898.629565 eV Total energy + Delta-G solvation = -3202.983161 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.79444 -38.32034 -35.93614 -34.71104 -33.36638 -31.81594 -29.85134 -27.75042 -27.49043 -27.39359 -25.60039 -24.87458 -23.10791 -21.94592 -21.09647 -19.16899 -18.03703 -17.01942 -16.50175 -16.05090 -15.21547 -15.13395 -14.92249 -14.50187 -14.08611 -13.99110 -13.81025 -13.43249 -13.04549 -12.88655 -12.61092 -12.52452 -12.42105 -12.27411 -12.12357 -11.83700 -11.68466 -11.61919 -11.17474 -11.08483 -11.01805 -10.90533 -10.80606 -10.71334 -10.43667 -10.21526 -10.10884 -9.88786 -9.57135 -9.30223 -8.80192 -8.33612 -6.83778 -5.67149 -2.96884 2.84451 3.16710 3.48675 3.53056 3.55557 4.36254 4.62363 4.63563 4.71084 4.75416 4.88779 4.92197 5.09803 5.21575 5.29777 5.31753 5.33993 5.43983 5.50000 5.60011 5.65215 5.66248 5.70111 5.72274 5.74688 5.80912 5.86126 5.93514 5.95423 6.01614 6.05012 6.09304 6.21349 6.23963 6.36833 6.39208 6.41780 6.64568 6.75924 6.83662 6.94820 7.63608 7.76542 8.42512 8.50531 9.61390 10.20089 10.54221 11.55177 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019800 B = 0.004713 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.796071 B = 5939.318930 C = 6979.038683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.131 4.131 5 C 0.085 3.915 6 N -0.608 5.608 7 C 0.518 3.482 8 O -0.529 6.529 9 C -0.086 4.086 10 C -0.127 4.127 11 C -0.153 4.153 12 C -0.156 4.156 13 C 0.119 3.881 14 C -0.102 4.102 15 H 0.072 0.928 16 C 0.161 3.839 17 N -0.733 5.733 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.929 5.929 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.022 0.978 45 H 0.020 0.980 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 -2.599 22.716 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.169 4.169 5 C -0.037 4.037 6 N -0.341 5.341 7 C 0.305 3.695 8 O -0.405 6.405 9 C -0.089 4.089 10 C -0.184 4.184 11 C -0.210 4.210 12 C -0.213 4.213 13 C -0.003 4.003 14 C -0.121 4.121 15 H 0.091 0.909 16 C 0.033 3.967 17 N -0.378 5.378 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.084 0.916 44 H 0.040 0.960 45 H 0.037 0.963 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.610 -2.782 21.998 22.465 hybrid contribution -0.003 0.233 -0.989 1.016 sum -3.613 -2.549 21.009 21.469 Atomic orbital electron populations 1.21983 0.95279 1.01954 1.01726 1.21059 0.95972 0.99314 0.93988 0.90938 1.21980 1.01136 0.95339 0.98471 1.22393 1.00381 0.93810 0.87161 1.48083 1.57696 1.20957 1.07351 1.20557 0.77266 0.80852 0.90821 1.90757 1.49805 1.66263 1.33645 1.20765 0.97407 0.97074 0.93684 1.21660 1.01818 0.93759 1.01177 1.22131 0.99089 1.00246 0.99522 1.22281 0.95715 1.03132 1.00169 1.21632 0.99722 0.92975 0.85932 1.21594 1.00855 0.94577 0.95092 0.90949 1.20676 0.95915 0.94684 0.85439 1.42428 1.56813 1.37731 1.00808 1.19199 1.23250 1.10994 0.83824 0.91281 1.24751 1.00057 0.98309 0.97783 1.69677 1.35395 1.24218 1.28490 0.86216 0.77738 0.77760 0.84626 1.21792 1.21797 1.20806 0.93208 0.91816 0.92450 0.90954 0.91546 0.91382 0.87872 0.91677 0.92288 0.92102 0.91075 0.91476 0.91773 0.92099 0.91661 0.90724 0.88054 0.91611 0.96010 0.96272 0.78092 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.11 37.16 0.30 -1.43 16 2 C -0.08 -1.05 2.71 -90.58 -0.25 -1.29 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.31 5.46 -26.62 -0.15 -1.45 16 5 C 0.09 0.85 3.50 -3.71 -0.01 0.84 16 6 N -0.61 -8.68 2.97 -173.03 -0.51 -9.19 16 7 C 0.52 8.17 6.46 -10.98 -0.07 8.10 16 8 O -0.53 -11.08 15.40 5.55 0.09 -10.99 16 9 C -0.09 -0.96 0.75 -155.66 -0.12 -1.07 16 10 C -0.13 -1.43 7.75 37.16 0.29 -1.14 16 11 C -0.15 -1.38 8.10 37.16 0.30 -1.08 16 12 C -0.16 -1.33 7.98 37.16 0.30 -1.04 16 13 C 0.12 2.07 5.04 -3.93 -0.02 2.05 16 14 C -0.10 -1.70 2.14 -90.72 -0.19 -1.89 16 15 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 16 C 0.16 3.29 5.19 -4.04 -0.02 3.27 16 17 N -0.73 -19.32 5.38 -59.91 -0.32 -19.64 16 18 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -29.46 13.06 55.49 0.72 -28.73 16 22 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.81 6.57 -51.93 -0.34 0.46 16 28 H 0.06 0.66 4.99 -51.92 -0.26 0.40 16 29 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 30 H 0.07 0.71 7.97 -51.93 -0.41 0.29 16 31 H 0.07 0.62 6.67 -51.93 -0.35 0.28 16 32 H 0.10 0.83 2.58 -51.93 -0.13 0.70 16 33 H 0.06 0.83 8.02 -51.93 -0.42 0.41 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.61 4.92 -51.93 -0.26 0.36 16 37 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 38 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.06 0.59 8.12 -51.93 -0.42 0.16 16 40 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 41 H 0.07 0.54 4.66 -51.93 -0.24 0.30 16 42 H 0.10 2.23 6.19 -51.93 -0.32 1.91 16 43 H 0.07 1.10 6.70 -51.93 -0.35 0.76 16 44 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 45 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 46 H 0.38 10.92 6.89 -40.82 -0.28 10.63 16 47 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -34.05 344.77 -7.63 -41.69 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.90 Total: 7.37 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 0.12 Total: -3.77 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.11 Total: -57.57 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.05 -7.63 -41.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133253576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.190 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds