Wall clock time and date at job start Tue Mar 31 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.45475 * 2 1 4 4 C 1.53044 * 109.45615 * 119.96513 * 2 1 3 5 5 C 1.53200 * 109.30890 * 181.38180 * 4 2 1 6 6 N 1.46927 * 108.77562 * 305.36742 * 5 4 2 7 7 C 1.34776 * 120.62873 * 233.58505 * 6 5 4 8 8 O 1.21280 * 119.99935 * 174.19278 * 7 6 5 9 9 C 1.50704 * 120.00116 * 354.19968 * 7 6 5 10 10 C 1.52994 * 109.47295 * 187.70228 * 9 7 6 11 11 C 1.53004 * 109.46856 * 307.70222 * 9 7 6 12 12 C 1.52996 * 109.47196 * 67.69807 * 9 7 6 13 13 C 1.46915 * 118.73984 * 53.60908 * 6 5 4 14 14 C 1.53043 * 109.45871 * 240.03133 * 2 1 3 15 15 H 1.08996 * 109.50051 * 298.60057 * 14 2 1 16 16 C 1.52993 * 109.49469 * 58.66587 * 14 2 1 17 17 N 1.46502 * 109.47107 * 184.99540 * 16 14 2 18 18 C 1.36935 * 120.00187 * 180.27545 * 17 16 14 19 19 H 1.08003 * 119.99904 * 359.72745 * 18 17 16 20 20 C 1.38816 * 120.00258 * 179.72863 * 18 17 16 21 21 N 1.31626 * 119.99693 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00319 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46992 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46921 * 119.99835 * 22 20 18 25 25 H 1.48497 * 109.46937 * 240.00120 * 22 20 18 26 26 H 1.08998 * 109.47577 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46865 * 299.96935 * 1 2 3 28 28 H 1.09001 * 109.47011 * 59.96598 * 1 2 3 29 29 H 1.08997 * 109.49868 * 301.33521 * 4 2 1 30 30 H 1.08998 * 109.49920 * 61.40512 * 4 2 1 31 31 H 1.08995 * 109.58400 * 65.15615 * 5 4 2 32 32 H 1.09007 * 109.58168 * 185.57858 * 5 4 2 33 33 H 1.09004 * 109.47327 * 59.99764 * 10 9 7 34 34 H 1.09002 * 109.47455 * 180.02562 * 10 9 7 35 35 H 1.09005 * 109.47009 * 299.99935 * 10 9 7 36 36 H 1.08996 * 109.47407 * 70.33678 * 11 9 7 37 37 H 1.09000 * 109.46960 * 190.34118 * 11 9 7 38 38 H 1.09005 * 109.47253 * 310.33411 * 11 9 7 39 39 H 1.09001 * 109.47018 * 72.24581 * 12 9 7 40 40 H 1.09009 * 109.47087 * 192.24138 * 12 9 7 41 41 H 1.08996 * 109.47566 * 312.24138 * 12 9 7 42 42 H 1.09004 * 109.58865 * 186.60274 * 13 6 5 43 43 H 1.09004 * 109.58860 * 66.17767 * 13 6 5 44 44 H 1.09000 * 109.47172 * 65.00108 * 16 14 2 45 45 H 1.08997 * 109.47555 * 304.99795 * 16 14 2 46 46 H 0.96999 * 120.00094 * 0.02562 * 17 16 14 47 47 H 0.96997 * 119.99550 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0397 -0.7208 1.2502 5 6 3.5713 -0.6887 1.2643 6 7 4.0678 -1.2489 0.0000 7 6 4.9619 -2.2573 0.0000 8 8 5.2846 -2.7817 -1.0449 9 6 5.5608 -2.7334 1.2984 10 6 6.6745 -3.7412 1.0072 11 6 6.1395 -1.5399 2.0610 12 6 4.4763 -3.4023 2.1453 13 6 3.5713 -0.6887 -1.2642 14 6 2.0398 -0.7208 -1.2501 15 1 1.6973 -1.7555 -1.2386 16 6 1.5027 -0.0189 -2.4989 17 7 1.8917 -0.7771 -3.6906 18 6 1.5254 -0.3345 -4.9336 19 1 0.9460 0.5713 -5.0352 20 6 1.8988 -1.0499 -6.0631 21 7 2.6045 -2.1540 -5.9392 22 14 1.3986 -0.4464 -7.7586 23 1 0.6142 0.8076 -7.6262 24 1 2.6147 -0.1867 -8.5703 25 1 0.5687 -1.4805 -8.4272 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5134 0.8903 28 1 -0.3633 0.5144 -0.8897 29 1 1.6571 -0.2207 2.1399 30 1 1.6972 -1.7555 1.2387 31 1 3.9142 0.3408 1.3674 32 1 3.9416 -1.2847 2.0985 33 1 7.4472 -3.2646 0.4039 34 1 7.1073 -4.0859 1.9463 35 1 6.2621 -4.5915 0.4639 36 1 5.3261 -0.9140 2.4279 37 1 6.7302 -1.8991 2.9038 38 1 6.7749 -0.9564 1.3946 39 1 4.2176 -4.3670 1.7085 40 1 4.8471 -3.5505 3.1596 41 1 3.5916 -2.7663 2.1712 42 1 3.9416 -1.2847 -2.0984 43 1 3.9143 0.3408 -1.3673 44 1 1.9178 0.9872 -2.5571 45 1 0.4157 0.0391 -2.4440 46 1 2.4118 -1.5908 -3.5994 47 1 2.8657 -2.6537 -6.7285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133253577.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:41 Heat of formation + Delta-G solvation = -29.866858 kcal Electronic energy + Delta-G solvation = -23955.686591 eV Core-core repulsion = 20752.557352 eV Total energy + Delta-G solvation = -3203.129239 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.69686 -38.14663 -35.93786 -34.73377 -33.59439 -31.80954 -29.82557 -28.22876 -27.55895 -27.39035 -25.50778 -23.97093 -23.14940 -21.53346 -21.15746 -19.72111 -18.58950 -17.03887 -16.44359 -16.03166 -15.24256 -14.84891 -14.76785 -14.45515 -14.16366 -13.87097 -13.67580 -13.48866 -12.94460 -12.82452 -12.79321 -12.52490 -12.43857 -12.33938 -11.91595 -11.88148 -11.70398 -11.66652 -11.45314 -11.08089 -10.97756 -10.92816 -10.76329 -10.72233 -10.46974 -10.16738 -10.09414 -9.87033 -9.57249 -9.30148 -8.80686 -8.38367 -6.83260 -5.67347 -2.96905 2.84081 3.16019 3.48399 3.53139 3.56089 4.35758 4.61458 4.63061 4.69779 4.76222 4.89149 4.90196 5.08298 5.20190 5.30434 5.32359 5.34809 5.44106 5.49653 5.64287 5.65452 5.69426 5.70226 5.73631 5.75326 5.78455 5.89150 5.93484 5.95999 6.01298 6.06576 6.09044 6.22165 6.24483 6.28585 6.36926 6.49146 6.63322 6.74434 6.86434 6.94812 7.62717 7.77025 8.41873 8.50421 9.61339 10.20144 10.54238 11.55069 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.004731 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.690803 B = 5916.621903 C = 7064.446655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.070 0.930 4 C -0.131 4.131 5 C 0.086 3.914 6 N -0.609 5.609 7 C 0.518 3.482 8 O -0.529 6.529 9 C -0.086 4.086 10 C -0.127 4.127 11 C -0.156 4.156 12 C -0.153 4.153 13 C 0.119 3.881 14 C -0.101 4.101 15 H 0.073 0.927 16 C 0.159 3.841 17 N -0.733 5.733 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.929 5.929 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.017 0.983 45 H 0.026 0.974 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.023 2.223 22.748 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.088 0.912 4 C -0.169 4.169 5 C -0.037 4.037 6 N -0.342 5.342 7 C 0.305 3.695 8 O -0.404 6.404 9 C -0.089 4.089 10 C -0.184 4.184 11 C -0.213 4.213 12 C -0.210 4.210 13 C -0.003 4.003 14 C -0.120 4.120 15 H 0.091 0.909 16 C 0.031 3.969 17 N -0.378 5.378 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.121 0.879 43 H 0.081 0.919 44 H 0.035 0.965 45 H 0.044 0.956 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.133 2.037 22.035 22.349 hybrid contribution -0.149 0.105 -0.995 1.011 sum 2.984 2.142 21.040 21.358 Atomic orbital electron populations 1.21883 0.95027 1.01929 1.01654 1.21083 0.95895 0.99314 0.94011 0.91161 1.22027 0.94883 1.01554 0.98442 1.22378 0.94635 0.99436 0.87205 1.48096 1.43192 1.35541 1.07373 1.20560 0.78938 0.79156 0.90823 1.90756 1.60712 1.55321 1.33651 1.20766 0.97149 0.97343 0.93684 1.21661 0.97092 0.98479 1.01188 1.22276 1.01740 0.97040 1.00198 1.22129 0.97936 1.01399 0.99511 1.21715 0.93689 0.98890 0.85980 1.21696 0.94634 1.00654 0.95045 0.90860 1.20720 0.96774 0.93997 0.85445 1.42433 1.65559 1.28982 1.00794 1.19247 1.27827 1.06307 0.83781 0.91225 1.24756 1.00876 0.97541 0.97782 1.69694 1.42436 1.17312 1.28337 0.86146 0.77606 0.77710 0.84909 1.20606 1.21904 1.21929 0.92805 0.93277 0.91648 0.90954 0.91497 0.91638 0.87767 0.92094 0.92274 0.91676 0.90746 0.91655 0.92096 0.91769 0.91465 0.91090 0.87917 0.91858 0.96490 0.95596 0.78104 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.81 37.16 0.33 -1.43 16 2 C -0.08 -1.05 2.23 -90.58 -0.20 -1.25 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.31 5.20 -26.61 -0.14 -1.45 16 5 C 0.09 0.86 3.98 -3.71 -0.01 0.85 16 6 N -0.61 -8.74 2.96 -172.76 -0.51 -9.25 16 7 C 0.52 8.18 6.45 -10.98 -0.07 8.11 16 8 O -0.53 -11.08 15.40 5.56 0.09 -11.00 16 9 C -0.09 -0.96 0.75 -155.66 -0.12 -1.07 16 10 C -0.13 -1.43 7.75 37.15 0.29 -1.14 16 11 C -0.16 -1.33 7.97 37.16 0.30 -1.03 16 12 C -0.15 -1.38 8.10 37.16 0.30 -1.08 16 13 C 0.12 2.07 5.53 -3.72 -0.02 2.05 16 14 C -0.10 -1.68 1.92 -90.50 -0.17 -1.86 16 15 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 16 C 0.16 3.24 5.41 -4.04 -0.02 3.22 16 17 N -0.73 -19.28 5.38 -59.91 -0.32 -19.60 16 18 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.53 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -29.46 13.06 55.49 0.72 -28.73 16 22 Si 0.90 23.10 29.55 -169.99 -5.02 18.08 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.86 6.29 -51.93 -0.33 0.53 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.72 8.00 -51.93 -0.42 0.30 16 31 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.10 0.84 2.56 -51.92 -0.13 0.71 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.83 8.02 -51.93 -0.42 0.41 16 36 H 0.07 0.53 4.71 -51.93 -0.24 0.29 16 37 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 38 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.07 0.45 8.09 -51.92 -0.42 0.03 16 41 H 0.07 0.61 4.97 -51.93 -0.26 0.35 16 42 H 0.10 2.26 6.21 -51.93 -0.32 1.94 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 46 H 0.38 10.90 6.90 -40.82 -0.28 10.62 16 47 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -34.08 350.99 -7.72 -41.80 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -8.17 Total: 7.08 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 0.21 Total: -3.67 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.11 Total: -57.59 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.08 -7.72 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133253577.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.935 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds