Wall clock time and date at job start Tue Mar 31 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 110.43620 * 2 1 4 4 C 1.54895 * 110.48818 * 122.54150 * 2 1 3 5 5 C 1.54888 * 102.74858 * 156.62061 * 4 2 1 6 6 C 1.54270 * 104.19813 * 322.05782 * 5 4 2 7 7 C 1.52995 * 110.03129 * 142.94383 * 6 5 4 8 8 C 1.50693 * 110.03234 * 264.32677 * 6 5 4 9 9 O 1.21289 * 120.00136 * 7.41467 * 8 6 5 10 10 N 1.34774 * 120.00220 * 187.41300 * 8 6 5 11 11 C 1.46507 * 120.00347 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47326 * 180.02562 * 11 10 8 13 13 N 1.46494 * 109.47254 * 179.97438 * 12 11 10 14 14 C 1.36936 * 120.00229 * 179.72293 * 13 12 11 15 15 H 1.08007 * 119.99626 * 0.27932 * 14 13 12 16 16 C 1.38810 * 120.00361 * 180.27566 * 14 13 12 17 17 N 1.31619 * 120.00172 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99744 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47304 * 89.99872 * 18 16 14 20 20 H 1.48506 * 109.47157 * 210.00119 * 18 16 14 21 21 H 1.48503 * 109.47156 * 329.99737 * 18 16 14 22 22 C 1.53878 * 106.59589 * 23.61027 * 6 5 4 23 23 C 1.52995 * 110.02969 * 119.28727 * 22 6 5 24 24 C 1.52998 * 110.03135 * 240.71591 * 22 6 5 25 25 H 1.09004 * 109.47211 * 298.91454 * 1 2 3 26 26 H 1.09002 * 109.47049 * 58.90993 * 1 2 3 27 27 H 1.09001 * 109.47005 * 178.91141 * 1 2 3 28 28 H 1.09001 * 110.74948 * 38.30638 * 4 2 1 29 29 H 1.08995 * 110.75161 * 274.93474 * 4 2 1 30 30 H 1.09004 * 110.48333 * 203.38087 * 5 4 2 31 31 H 1.09002 * 110.60215 * 80.79248 * 5 4 2 32 32 H 1.09005 * 109.46954 * 182.09044 * 7 6 5 33 33 H 1.09000 * 109.47105 * 302.09136 * 7 6 5 34 34 H 1.08998 * 109.47153 * 62.09484 * 7 6 5 35 35 H 0.97003 * 120.00180 * 0.02562 * 10 8 6 36 36 H 1.08997 * 109.46938 * 60.00052 * 11 10 8 37 37 H 1.09004 * 109.46741 * 300.00370 * 11 10 8 38 38 H 1.09004 * 109.46755 * 59.99543 * 12 11 10 39 39 H 1.09005 * 109.46992 * 300.00487 * 12 11 10 40 40 H 0.97003 * 119.99544 * 0.02562 * 13 12 11 41 41 H 0.96998 * 120.00080 * 179.97438 * 17 16 14 42 42 H 1.08995 * 109.47742 * 59.99559 * 23 22 6 43 43 H 1.09001 * 109.47521 * 179.97438 * 23 22 6 44 44 H 1.09009 * 109.47335 * 299.99742 * 23 22 6 45 45 H 1.08999 * 109.47254 * 55.86201 * 24 22 6 46 46 H 1.08997 * 109.47204 * 175.86540 * 24 22 6 47 47 H 1.09002 * 109.46868 * 295.86636 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0213 0.0000 4 6 2.0721 -0.7805 1.2232 5 6 3.4907 -1.1970 0.7615 6 6 3.3166 -1.5414 -0.7322 7 6 4.5470 -1.0895 -1.5211 8 6 3.1129 -3.0251 -0.8994 9 8 2.9707 -3.7316 0.0762 10 7 3.0886 -3.5672 -2.1331 11 6 2.8900 -5.0096 -2.2958 12 6 2.9044 -5.3617 -3.7846 13 7 2.7065 -6.8041 -3.9472 14 6 2.6768 -7.3541 -5.2009 15 1 2.8038 -6.7251 -6.0697 16 6 2.4835 -8.7200 -5.3553 17 7 2.4554 -9.2487 -6.5603 18 14 2.2631 -9.8077 -3.8527 19 1 0.8206 -9.8937 -3.5110 20 1 2.7845 -11.1672 -4.1449 21 1 3.0093 -9.2271 -2.7075 22 6 2.0699 -0.7803 -1.2163 23 6 2.4506 0.1911 -2.3353 24 6 1.0139 -1.7683 -1.7159 25 1 -0.3634 0.4969 0.8996 26 1 -0.3633 0.5307 -0.8801 27 1 -0.3633 -1.0275 -0.0195 28 1 1.4580 -1.6583 1.4243 29 1 2.1251 -0.1356 2.1002 30 1 3.8315 -2.0706 1.3172 31 1 4.1916 -0.3711 0.8833 32 1 4.3987 -1.3035 -2.5796 33 1 4.6932 -0.0181 -1.3840 34 1 5.4258 -1.6250 -1.1619 35 1 3.2026 -3.0023 -2.9134 36 1 1.9310 -5.2953 -1.8638 37 1 3.6915 -5.5462 -1.7880 38 1 3.8637 -5.0760 -4.2163 39 1 2.1032 -4.8250 -4.2927 40 1 2.5920 -7.3689 -3.1670 41 1 2.3207 -10.2032 -6.6681 42 1 2.8774 -0.3652 -3.1698 43 1 1.5616 0.7246 -2.6715 44 1 3.1843 0.9058 -1.9621 45 1 0.7851 -2.4853 -0.9274 46 1 0.1084 -1.2258 -1.9876 47 1 1.3959 -2.2978 -2.5887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134782890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:45 Heat of formation + Delta-G solvation = -38.745991 kcal Electronic energy + Delta-G solvation = -23688.717836 eV Core-core repulsion = 20485.203568 eV Total energy + Delta-G solvation = -3203.514267 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.35101 -38.27292 -35.86408 -34.13875 -33.21019 -32.38020 -31.34070 -28.60278 -28.39123 -27.29019 -24.46027 -23.87450 -23.45948 -21.63138 -21.39336 -19.78966 -18.42713 -17.62507 -16.74613 -16.10184 -15.69730 -15.42670 -14.72898 -14.49046 -14.25518 -13.93168 -13.73594 -13.66351 -13.54155 -13.36243 -13.07932 -12.67006 -12.63243 -12.42775 -11.93445 -11.80940 -11.55855 -11.52699 -11.48540 -11.23676 -11.03252 -10.92007 -10.86124 -10.82584 -10.62018 -10.56487 -10.43164 -10.16830 -9.65011 -9.53426 -8.99308 -8.81513 -7.31129 -5.80996 -3.18281 2.73564 3.24130 3.37742 3.41537 3.45452 4.14992 4.25128 4.40561 4.56786 4.79691 4.88564 4.96343 5.03499 5.09281 5.15408 5.20018 5.30533 5.34490 5.42825 5.44238 5.45355 5.55683 5.56682 5.61051 5.63343 5.66377 5.71984 5.76561 5.79733 5.86239 5.89486 5.97539 5.98431 5.99359 6.09582 6.17807 6.21404 6.31125 6.42780 6.58771 6.65586 7.60641 7.92560 8.32907 8.37272 9.14944 9.87334 10.05808 11.36911 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027559 B = 0.003606 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.747204 B = 7762.794588 C = 7881.723645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.075 0.925 4 C -0.119 4.119 5 C -0.106 4.106 6 C -0.077 4.077 7 C -0.142 4.142 8 C 0.531 3.469 9 O -0.543 6.543 10 N -0.722 5.722 11 C 0.107 3.893 12 C 0.149 3.851 13 N -0.752 5.752 14 C -0.249 4.249 15 H 0.091 0.909 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.884 3.116 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.050 4.050 23 C -0.142 4.142 24 C -0.156 4.156 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.399 0.601 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.363 0.637 41 H 0.261 0.739 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 23.560 13.268 27.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.156 4.156 5 C -0.144 4.144 6 C -0.081 4.081 7 C -0.200 4.200 8 C 0.317 3.683 9 O -0.420 6.420 10 N -0.375 5.375 11 C -0.017 4.017 12 C 0.021 3.979 13 N -0.399 5.399 14 C -0.378 4.378 15 H 0.109 0.891 16 C -0.189 4.189 17 N -0.579 5.579 18 Si 0.714 3.286 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.050 4.050 23 C -0.199 4.199 24 C -0.213 4.213 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.235 0.765 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.196 0.804 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.136 22.992 13.695 26.762 hybrid contribution -0.110 -0.722 0.505 0.887 sum 0.026 22.271 14.199 26.412 Atomic orbital electron populations 1.21913 0.95031 1.02260 1.01211 1.22035 0.95608 0.98728 0.94026 0.90670 1.22540 0.96239 0.99821 0.97008 1.22330 0.97454 1.01742 0.92864 1.21519 0.96758 0.91690 0.98089 1.22033 0.96123 1.01980 0.99816 1.20271 0.75467 0.89713 0.82869 1.90677 1.49622 1.62916 1.38771 1.46060 1.73894 1.09380 1.08136 1.21573 1.01875 0.79843 0.98392 1.20725 0.98958 0.86800 0.91393 1.42534 1.89409 1.02229 1.05697 1.19009 1.42582 0.92167 0.84066 0.89113 1.24665 1.01559 0.96489 0.96160 1.69698 1.56326 1.11833 1.20084 0.86551 0.78133 0.80642 0.83257 1.20913 1.21569 1.20190 1.21138 0.93349 0.94993 0.95536 1.22048 1.01390 0.98747 0.97729 1.22310 0.98637 0.98704 1.01640 0.92981 0.92705 0.91978 0.91037 0.91652 0.89998 0.91193 0.91787 0.91097 0.92279 0.76547 0.91492 0.91525 0.95044 0.94993 0.80402 0.92935 0.92115 0.92530 0.92095 0.92194 0.91853 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 7.98 37.15 0.30 -0.87 16 2 C -0.09 -0.70 2.91 -88.96 -0.26 -0.96 16 3 H 0.07 0.55 7.84 -51.93 -0.41 0.14 16 4 C -0.12 -1.11 6.33 -24.74 -0.16 -1.26 16 5 C -0.11 -1.06 5.65 -25.07 -0.14 -1.20 16 6 C -0.08 -0.77 0.82 -154.54 -0.13 -0.90 16 7 C -0.14 -1.15 7.01 37.16 0.26 -0.89 16 8 C 0.53 7.22 4.60 -10.99 -0.05 7.17 16 9 O -0.54 -9.51 15.47 5.55 0.09 -9.42 16 10 N -0.72 -9.43 3.88 -60.29 -0.23 -9.66 16 11 C 0.11 1.74 5.79 -4.04 -0.02 1.71 16 12 C 0.15 2.78 6.37 -4.05 -0.03 2.76 16 13 N -0.75 -17.96 5.41 -59.91 -0.32 -18.29 16 14 C -0.25 -7.05 10.47 -15.06 -0.16 -7.20 16 15 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 16 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 17 N -0.93 -29.25 13.97 55.49 0.78 -28.48 16 18 Si 0.88 22.29 27.74 -169.99 -4.71 17.57 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.28 -6.60 6.52 56.52 0.37 -6.24 16 22 C -0.05 -0.43 0.86 -153.39 -0.13 -0.57 16 23 C -0.14 -1.00 7.21 37.15 0.27 -0.73 16 24 C -0.16 -1.59 5.98 37.16 0.22 -1.37 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.40 7.84 -51.93 -0.41 -0.01 16 27 H 0.06 0.56 6.41 -51.93 -0.33 0.22 16 28 H 0.07 0.80 8.06 -51.93 -0.42 0.39 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.99 6.96 -51.93 -0.36 0.63 16 31 H 0.07 0.57 7.84 -51.93 -0.41 0.16 16 32 H 0.06 0.47 5.84 -51.93 -0.30 0.17 16 33 H 0.07 0.46 6.68 -51.93 -0.35 0.12 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.40 4.29 6.69 -40.82 -0.27 4.02 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.36 8.56 5.53 -40.82 -0.23 8.33 16 41 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 42 H 0.06 0.41 6.76 -51.93 -0.35 0.06 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.37 6.70 -51.92 -0.35 0.03 16 45 H 0.06 0.75 6.85 -51.93 -0.36 0.39 16 46 H 0.06 0.58 6.61 -51.93 -0.34 0.24 16 47 H 0.06 0.69 5.85 -51.93 -0.30 0.39 16 LS Contribution 348.65 15.07 5.25 5.25 Total: -1.00 -32.72 348.65 -7.44 -40.16 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -8.16 Total: 7.04 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.12 Total: -4.19 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.22 Total: -56.42 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.72 -7.44 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134782890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.411 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds