Wall clock time and date at job start Tue Mar 31 2020 06:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 110.43620 * 2 1 4 4 C 1.54895 * 110.48818 * 122.54150 * 2 1 3 5 5 C 1.54888 * 102.74858 * 156.62061 * 4 2 1 6 6 C 1.54270 * 104.19813 * 322.05782 * 5 4 2 7 7 C 1.52995 * 110.03129 * 142.94383 * 6 5 4 8 8 C 1.50693 * 110.03234 * 264.32677 * 6 5 4 9 9 O 1.21289 * 120.00136 * 7.41467 * 8 6 5 10 10 N 1.34774 * 120.00220 * 187.41300 * 8 6 5 11 11 C 1.46507 * 120.00347 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47326 * 180.02562 * 11 10 8 13 13 N 1.46494 * 109.47254 * 179.97438 * 12 11 10 14 14 C 1.36936 * 120.00229 * 179.72293 * 13 12 11 15 15 H 1.08007 * 119.99626 * 0.27932 * 14 13 12 16 16 C 1.38810 * 120.00361 * 180.27566 * 14 13 12 17 17 N 1.31619 * 120.00172 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99744 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47304 * 89.99872 * 18 16 14 20 20 H 1.48506 * 109.47157 * 210.00119 * 18 16 14 21 21 H 1.48503 * 109.47156 * 329.99737 * 18 16 14 22 22 C 1.53878 * 106.59589 * 23.61027 * 6 5 4 23 23 C 1.52995 * 110.02969 * 119.28727 * 22 6 5 24 24 C 1.52998 * 110.03135 * 240.71591 * 22 6 5 25 25 H 1.09004 * 109.47211 * 298.91454 * 1 2 3 26 26 H 1.09002 * 109.47049 * 58.90993 * 1 2 3 27 27 H 1.09001 * 109.47005 * 178.91141 * 1 2 3 28 28 H 1.09001 * 110.74948 * 38.30638 * 4 2 1 29 29 H 1.08995 * 110.75161 * 274.93474 * 4 2 1 30 30 H 1.09004 * 110.48333 * 203.38087 * 5 4 2 31 31 H 1.09002 * 110.60215 * 80.79248 * 5 4 2 32 32 H 1.09005 * 109.46954 * 182.09044 * 7 6 5 33 33 H 1.09000 * 109.47105 * 302.09136 * 7 6 5 34 34 H 1.08998 * 109.47153 * 62.09484 * 7 6 5 35 35 H 0.97003 * 120.00180 * 0.02562 * 10 8 6 36 36 H 1.08997 * 109.46938 * 60.00052 * 11 10 8 37 37 H 1.09004 * 109.46741 * 300.00370 * 11 10 8 38 38 H 1.09004 * 109.46755 * 59.99543 * 12 11 10 39 39 H 1.09005 * 109.46992 * 300.00487 * 12 11 10 40 40 H 0.97003 * 119.99544 * 0.02562 * 13 12 11 41 41 H 0.96998 * 120.00080 * 179.97438 * 17 16 14 42 42 H 1.08995 * 109.47742 * 59.99559 * 23 22 6 43 43 H 1.09001 * 109.47521 * 179.97438 * 23 22 6 44 44 H 1.09009 * 109.47335 * 299.99742 * 23 22 6 45 45 H 1.08999 * 109.47254 * 55.86201 * 24 22 6 46 46 H 1.08997 * 109.47204 * 175.86540 * 24 22 6 47 47 H 1.09002 * 109.46868 * 295.86636 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0213 0.0000 4 6 2.0721 -0.7805 1.2232 5 6 3.4907 -1.1970 0.7615 6 6 3.3166 -1.5414 -0.7322 7 6 4.5470 -1.0895 -1.5211 8 6 3.1129 -3.0251 -0.8994 9 8 2.9707 -3.7316 0.0762 10 7 3.0886 -3.5672 -2.1331 11 6 2.8900 -5.0096 -2.2958 12 6 2.9044 -5.3617 -3.7846 13 7 2.7065 -6.8041 -3.9472 14 6 2.6768 -7.3541 -5.2009 15 1 2.8038 -6.7251 -6.0697 16 6 2.4835 -8.7200 -5.3553 17 7 2.4554 -9.2487 -6.5603 18 14 2.2631 -9.8077 -3.8527 19 1 0.8206 -9.8937 -3.5110 20 1 2.7845 -11.1672 -4.1449 21 1 3.0093 -9.2271 -2.7075 22 6 2.0699 -0.7803 -1.2163 23 6 2.4506 0.1911 -2.3353 24 6 1.0139 -1.7683 -1.7159 25 1 -0.3634 0.4969 0.8996 26 1 -0.3633 0.5307 -0.8801 27 1 -0.3633 -1.0275 -0.0195 28 1 1.4580 -1.6583 1.4243 29 1 2.1251 -0.1356 2.1002 30 1 3.8315 -2.0706 1.3172 31 1 4.1916 -0.3711 0.8833 32 1 4.3987 -1.3035 -2.5796 33 1 4.6932 -0.0181 -1.3840 34 1 5.4258 -1.6250 -1.1619 35 1 3.2026 -3.0023 -2.9134 36 1 1.9310 -5.2953 -1.8638 37 1 3.6915 -5.5462 -1.7880 38 1 3.8637 -5.0760 -4.2163 39 1 2.1032 -4.8250 -4.2927 40 1 2.5920 -7.3689 -3.1670 41 1 2.3207 -10.2032 -6.6681 42 1 2.8774 -0.3652 -3.1698 43 1 1.5616 0.7246 -2.6715 44 1 3.1843 0.9058 -1.9621 45 1 0.7851 -2.4853 -0.9274 46 1 0.1084 -1.2258 -1.9876 47 1 1.3959 -2.2978 -2.5887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134782890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:44 Heat of formation + Delta-G solvation = -59.964972 kcal Electronic energy + Delta-G solvation = -23689.637960 eV Core-core repulsion = 20485.203568 eV Total energy + Delta-G solvation = -3204.434391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.24058 -39.29575 -37.45471 -35.67048 -34.08726 -33.48677 -32.97003 -30.01994 -29.07664 -28.22806 -25.61773 -24.87723 -24.52960 -23.26269 -22.48835 -20.72553 -19.88207 -19.13479 -17.63570 -17.22550 -16.79381 -16.55397 -16.20965 -15.83993 -15.64910 -15.24543 -14.82139 -14.72321 -14.49332 -14.27510 -14.16786 -13.86749 -13.48871 -13.37525 -13.23920 -13.16084 -12.74526 -12.64238 -12.54619 -12.44751 -12.15508 -12.11251 -12.01268 -11.84851 -11.69467 -11.57225 -11.35610 -11.29812 -11.09584 -11.05179 -10.62110 -10.05934 -9.38401 -8.06897 -5.42195 1.37460 1.38826 1.46079 1.65597 2.11261 2.44910 3.24963 3.39846 3.50055 3.59668 3.77966 3.90850 4.08196 4.16206 4.19330 4.27124 4.35343 4.35877 4.45145 4.51629 4.54430 4.67789 4.77100 4.80889 4.86545 4.91404 4.93303 4.98580 5.04491 5.06707 5.09297 5.16938 5.19697 5.24245 5.27718 5.29267 5.34799 5.42470 5.47996 5.56766 5.63452 5.70650 6.16165 6.54185 7.01298 7.24867 7.75825 7.93536 9.13943 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027559 B = 0.003606 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.747204 B = 7762.794588 C = 7881.723645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 H 0.097 0.903 4 C -0.119 4.119 5 C -0.107 4.107 6 C -0.073 4.073 7 C -0.142 4.142 8 C 0.528 3.472 9 O -0.587 6.587 10 N -0.712 5.712 11 C 0.123 3.877 12 C 0.152 3.848 13 N -0.759 5.759 14 C -0.238 4.238 15 H 0.064 0.936 16 C -0.057 4.057 17 N -0.979 5.979 18 Si 0.951 3.049 19 H -0.278 1.278 20 H -0.292 1.292 21 H -0.256 1.256 22 C -0.046 4.046 23 C -0.141 4.141 24 C -0.153 4.153 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.413 0.587 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.366 0.634 41 H 0.260 0.740 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.029 0.971 46 H 0.073 0.927 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 26.165 14.174 29.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 H 0.115 0.885 4 C -0.157 4.157 5 C -0.145 4.145 6 C -0.076 4.076 7 C -0.199 4.199 8 C 0.316 3.684 9 O -0.467 6.467 10 N -0.365 5.365 11 C -0.002 4.002 12 C 0.025 3.975 13 N -0.405 5.405 14 C -0.369 4.369 15 H 0.082 0.918 16 C -0.250 4.250 17 N -0.629 5.629 18 Si 0.778 3.222 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.181 1.181 22 C -0.047 4.047 23 C -0.198 4.198 24 C -0.210 4.210 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.251 0.749 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.199 0.801 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.048 0.952 46 H 0.092 0.908 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.549 25.663 14.609 29.535 hybrid contribution -0.248 -1.458 0.207 1.494 sum 0.300 24.205 14.816 28.381 Atomic orbital electron populations 1.21897 0.94978 1.01356 1.02123 1.22055 0.95658 0.99384 0.92784 0.88468 1.22526 0.95538 0.99193 0.98441 1.22362 0.98259 1.01444 0.92426 1.21579 0.98534 0.88747 0.98753 1.22088 0.94469 1.03448 0.99863 1.21029 0.74050 0.91276 0.82022 1.90659 1.51510 1.64347 1.40153 1.45921 1.73607 1.08115 1.08885 1.21184 1.00959 0.81746 0.96300 1.20817 0.99452 0.84079 0.93119 1.42561 1.89380 1.04422 1.04149 1.19012 1.40793 0.92047 0.85030 0.91773 1.25452 1.02270 0.98120 0.99110 1.69860 1.58400 1.12107 1.22546 0.85477 0.78363 0.78306 0.80069 1.20367 1.21867 1.18103 1.21155 0.92040 0.94875 0.96598 1.22058 1.02242 0.98514 0.96943 1.22281 0.99821 0.98622 1.00324 0.92231 0.91636 0.93808 0.93953 0.90099 0.92867 0.88595 0.90871 0.88535 0.93070 0.74923 0.92551 0.92562 0.94152 0.94108 0.80131 0.93140 0.91724 0.91863 0.90372 0.95173 0.90800 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 7.98 71.98 0.57 -1.49 16 2 C -0.08 -1.12 2.91 -9.72 -0.03 -1.15 16 3 H 0.10 0.99 7.84 -2.39 -0.02 0.97 16 4 C -0.12 -2.10 6.33 31.89 0.20 -1.90 16 5 C -0.11 -1.99 5.65 31.67 0.18 -1.81 16 6 C -0.07 -1.34 0.82 -52.20 -0.04 -1.38 16 7 C -0.14 -1.86 7.01 71.98 0.50 -1.36 16 8 C 0.53 14.21 4.60 87.66 0.40 14.61 16 9 O -0.59 -21.11 15.47 -3.06 -0.05 -21.16 16 10 N -0.71 -17.97 3.88 -463.05 -1.80 -19.77 16 11 C 0.12 3.93 5.79 86.38 0.50 4.43 16 12 C 0.15 5.52 6.37 86.38 0.55 6.07 16 13 N -0.76 -35.67 5.41 -343.45 -1.86 -37.53 16 14 C -0.24 -13.55 10.47 84.03 0.88 -12.67 16 15 H 0.06 3.93 8.06 -2.91 -0.02 3.90 16 16 C -0.06 -3.39 5.50 84.86 0.47 -2.93 16 17 N -0.98 -62.55 13.97 21.65 0.30 -62.25 16 18 Si 0.95 46.05 27.74 68.60 1.90 47.95 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 21 H -0.26 -11.44 6.52 99.48 0.65 -10.79 16 22 C -0.05 -0.70 0.86 -51.46 -0.04 -0.74 16 23 C -0.14 -1.43 7.21 71.98 0.52 -0.91 16 24 C -0.15 -2.99 5.98 71.98 0.43 -2.56 16 25 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.06 0.78 7.84 -2.39 -0.02 0.76 16 27 H 0.04 0.77 6.41 -2.39 -0.02 0.76 16 28 H 0.04 0.98 8.06 -2.39 -0.02 0.96 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.31 6.96 -2.38 -0.02 1.29 16 31 H 0.10 1.27 7.84 -2.39 -0.02 1.25 16 32 H 0.07 0.83 5.84 -2.38 -0.01 0.82 16 33 H 0.10 0.81 6.68 -2.39 -0.02 0.80 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.41 8.14 6.69 -92.71 -0.62 7.52 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.37 16.77 5.53 -92.71 -0.51 16.25 16 41 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 42 H 0.06 0.62 6.76 -2.39 -0.02 0.61 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.08 0.56 6.70 -2.38 -0.02 0.54 16 45 H 0.03 0.76 6.85 -2.39 -0.02 0.74 16 46 H 0.07 1.26 6.61 -2.39 -0.02 1.24 16 47 H 0.06 1.20 5.85 -2.39 -0.01 1.19 16 Total: -1.00 -72.16 348.65 3.36 -68.80 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.24 Total: 27.74 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 5.09 Total: -3.78 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -3.35 Total: -119.55 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.90 Total: 47.95 kcal Total: -72.16 3.36 -68.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134782890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.832 kcal (2) G-P(sol) polarization free energy of solvation -72.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds