Wall clock time and date at job start Tue Mar 31 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47499 * 2 1 4 4 O 1.21280 * 119.99647 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00309 * 179.97438 * 3 2 1 6 6 C 1.46920 * 120.62839 * 180.02562 * 5 3 2 7 7 C 1.53195 * 108.77699 * 233.63159 * 6 5 3 8 8 C 1.53045 * 109.30978 * 305.36787 * 7 6 5 9 9 N 1.46901 * 109.45981 * 181.38555 * 8 7 6 10 10 C 1.46895 * 111.00035 * 153.75544 * 9 8 7 11 11 H 1.08997 * 109.46955 * 346.89318 * 10 9 8 12 12 C 1.52998 * 109.47333 * 106.89562 * 10 9 8 13 13 C 1.53004 * 109.46684 * 226.89359 * 10 9 8 14 14 C 1.52997 * 109.47251 * 65.00432 * 13 10 9 15 15 C 1.50702 * 109.47323 * 179.97438 * 14 13 10 16 16 H 1.07998 * 119.99799 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00055 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00063 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99904 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47264 * 59.99735 * 19 17 15 21 21 H 1.48500 * 109.46910 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46978 * 299.99770 * 19 17 15 23 23 C 1.53039 * 109.52757 * 61.36854 * 8 7 6 24 24 C 1.46919 * 120.62846 * 0.02562 * 5 3 2 25 25 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46519 * 299.99741 * 1 2 3 27 27 H 1.09001 * 109.47073 * 59.99746 * 1 2 3 28 28 H 1.09004 * 109.47375 * 239.99976 * 2 1 3 29 29 H 1.09001 * 109.47073 * 120.00254 * 2 1 3 30 30 H 1.09008 * 109.58911 * 113.84302 * 6 5 3 31 31 H 1.09002 * 109.70869 * 353.49124 * 6 5 3 32 32 H 1.08999 * 109.49890 * 185.41531 * 7 6 5 33 33 H 1.08998 * 109.52289 * 65.33272 * 7 6 5 34 34 H 1.09003 * 109.45920 * 301.35717 * 8 7 6 35 35 H 1.00898 * 110.99525 * 277.71150 * 9 8 7 36 36 H 1.09002 * 109.47020 * 62.80426 * 12 10 9 37 37 H 1.08997 * 109.47511 * 182.80483 * 12 10 9 38 38 H 1.09000 * 109.46905 * 302.81246 * 12 10 9 39 39 H 1.08996 * 109.47295 * 304.99809 * 13 10 9 40 40 H 1.09010 * 109.46750 * 184.99946 * 13 10 9 41 41 H 1.08996 * 109.47479 * 59.99491 * 14 13 10 42 42 H 1.09005 * 109.47222 * 299.99751 * 14 13 10 43 43 H 0.97004 * 120.00052 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.49656 * 58.58192 * 23 8 7 45 45 H 1.08994 * 109.49753 * 178.67450 * 23 8 7 46 46 H 1.09001 * 109.59160 * 246.15371 * 24 5 3 47 47 H 1.09001 * 109.59282 * 6.44271 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8624 3.0468 0.0011 7 6 4.8400 3.2146 -1.1664 8 6 5.9312 2.1458 -1.0705 9 7 6.8891 2.3243 -2.1698 10 6 8.2103 1.7940 -1.8081 11 1 8.2436 1.6019 -0.7358 12 6 8.4619 0.4900 -2.5679 13 6 9.2882 2.8153 -2.1771 14 6 9.1106 4.0742 -1.3260 15 6 10.1727 5.0799 -1.6889 16 1 10.9016 4.8445 -2.4502 17 6 10.2136 6.3006 -1.0491 18 7 9.3256 6.5874 -0.1224 19 14 11.5296 7.5474 -1.4995 20 1 11.4066 7.8997 -2.9368 21 1 11.3565 8.7698 -0.6741 22 1 12.8716 6.9643 -1.2459 23 6 5.2966 0.7566 -1.1677 24 6 4.3244 0.5609 0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.3776 3.2470 0.9407 31 1 3.0313 3.7424 -0.1153 32 1 5.2948 4.2041 -1.1207 33 1 4.3040 3.1037 -2.1091 34 1 6.4507 2.2418 -0.1170 35 1 6.5485 1.8986 -3.0188 36 1 8.4782 0.6910 -3.6391 37 1 9.4205 0.0706 -2.2624 38 1 7.6663 -0.2204 -2.3436 39 1 9.1977 3.0741 -3.2320 40 1 10.2733 2.3871 -1.9912 41 1 9.2012 3.8154 -0.2711 42 1 8.1256 4.5025 -1.5117 43 1 9.3542 7.4463 0.3275 44 1 4.7559 0.6688 -2.1100 45 1 6.0764 -0.0035 -1.1229 46 1 4.8772 0.5586 0.9400 47 1 3.7967 -0.3858 -0.1152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:13 Heat of formation + Delta-G solvation = -60.944914 kcal Electronic energy + Delta-G solvation = -22960.788579 eV Core-core repulsion = 19756.311694 eV Total energy + Delta-G solvation = -3204.476885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34195 -38.32223 -36.25831 -33.60014 -33.14360 -32.28870 -31.03625 -29.75383 -28.51518 -25.33780 -24.99262 -23.68814 -22.86607 -21.36442 -20.72692 -19.78721 -18.82197 -17.44774 -16.10278 -15.94992 -15.88770 -15.37027 -14.85071 -14.43397 -14.34606 -14.19239 -13.74730 -13.53843 -13.14954 -12.89742 -12.70385 -12.57566 -12.39049 -12.22705 -12.03386 -11.92630 -11.52016 -11.44825 -11.36677 -11.28953 -11.16657 -10.87599 -10.78853 -10.60961 -10.43109 -9.98979 -9.84501 -9.61377 -9.17653 -8.92023 -8.75110 -8.22240 -7.87987 -5.88337 -3.89055 2.52800 2.88976 3.38872 3.43194 3.45696 4.30602 4.38747 4.54564 4.57087 4.79682 4.82851 4.90020 4.91758 5.13703 5.21067 5.32670 5.37008 5.44899 5.46563 5.47379 5.49089 5.53378 5.60848 5.67813 5.76664 5.78112 5.87618 5.97482 6.02922 6.06613 6.18461 6.27509 6.37322 6.44943 6.59787 6.69102 6.92177 7.29863 7.33648 7.52045 7.82116 7.84276 8.08080 8.08246 8.22393 8.58575 9.19388 9.73517 11.22740 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.003452 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.011649 B = 8109.506059 C = 9074.490986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.511 3.489 4 O -0.545 6.545 5 N -0.611 5.611 6 C 0.110 3.890 7 C -0.121 4.121 8 C 0.093 3.907 9 N -0.667 5.667 10 C 0.084 3.916 11 H 0.063 0.937 12 C -0.174 4.174 13 C -0.098 4.098 14 C 0.031 3.969 15 C -0.518 4.518 16 H 0.050 0.950 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.279 1.279 23 C -0.166 4.166 24 C 0.111 3.889 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.333 0.667 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.004 0.996 42 H 0.031 0.969 43 H 0.258 0.742 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.870 -17.499 -0.162 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.299 3.701 4 O -0.422 6.422 5 N -0.345 5.345 6 C -0.013 4.013 7 C -0.159 4.159 8 C -0.018 4.018 9 N -0.296 5.296 10 C -0.025 4.025 11 H 0.081 0.919 12 C -0.233 4.233 13 C -0.136 4.136 14 C -0.006 4.006 15 C -0.556 4.556 16 H 0.068 0.932 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.206 4.206 24 C -0.013 4.013 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.151 0.849 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.022 0.978 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.162 -16.197 0.132 20.871 hybrid contribution 0.808 -0.311 -0.289 0.913 sum -12.353 -16.509 -0.157 20.620 Atomic orbital electron populations 1.21534 0.93104 1.01419 1.03386 1.21660 0.98532 0.94186 1.04003 1.20761 0.81750 0.91794 0.75752 1.90688 1.54814 1.46642 1.50082 1.48215 1.05447 1.07754 1.73096 1.21693 0.98157 0.82310 0.99093 1.21894 0.95421 1.01022 0.97601 1.21654 0.92719 0.91607 0.95802 1.60521 1.01914 1.62495 1.04636 1.21808 0.89907 0.92472 0.98359 0.91883 1.22489 1.01373 0.98193 1.01198 1.21647 0.94390 0.96844 1.00708 1.18972 0.97512 0.90550 0.93580 1.21309 1.13746 1.00107 1.20463 0.93203 1.24988 0.95898 0.98214 0.95306 1.69955 1.35310 1.22789 1.25484 0.86748 0.82399 0.80952 0.78392 1.20371 1.21406 1.20449 1.22809 0.98983 1.00074 0.98698 1.21712 0.90985 0.89433 0.99180 0.92200 0.91994 0.92000 0.89086 0.89084 0.91235 0.88947 0.88978 0.92013 0.90113 0.84883 0.92518 0.92317 0.93667 0.93323 0.93868 0.97798 0.95058 0.93205 0.91503 0.90752 0.91091 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.16 0.34 -0.77 16 2 C -0.14 -1.14 4.77 -27.88 -0.13 -1.28 16 3 C 0.51 6.19 7.70 -10.98 -0.08 6.10 16 4 O -0.54 -8.75 15.40 5.56 0.09 -8.67 16 5 N -0.61 -6.91 2.97 -172.75 -0.51 -7.42 16 6 C 0.11 1.42 6.43 -3.71 -0.02 1.40 16 7 C -0.12 -1.66 5.69 -26.61 -0.15 -1.81 16 8 C 0.09 1.21 2.37 -67.67 -0.16 1.05 16 9 N -0.67 -9.95 5.59 -99.70 -0.56 -10.51 16 10 C 0.08 1.32 2.63 -67.71 -0.18 1.14 16 11 H 0.06 1.03 7.15 -51.93 -0.37 0.65 16 12 C -0.17 -2.14 9.05 37.16 0.34 -1.80 16 13 C -0.10 -1.99 4.83 -26.73 -0.13 -2.12 16 14 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 15 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 16 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 19 Si 0.89 22.10 29.54 -169.99 -5.02 17.07 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.17 -1.59 5.33 -26.59 -0.14 -1.73 16 24 C 0.11 0.95 6.34 -3.69 -0.02 0.93 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 28 H 0.09 0.58 7.70 -51.93 -0.40 0.18 16 29 H 0.09 0.56 7.94 -51.93 -0.41 0.15 16 30 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.09 1.31 7.01 -51.93 -0.36 0.95 16 32 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.19 7.34 -51.93 -0.38 0.81 16 35 H 0.33 4.40 7.91 -39.29 -0.31 4.09 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.47 6.69 -51.93 -0.35 0.12 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 0.87 8.14 -51.92 -0.42 0.44 16 41 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 42 H 0.03 0.87 7.75 -51.93 -0.40 0.46 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.66 6.64 -51.93 -0.35 0.32 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.51 5.93 -51.93 -0.31 0.20 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -32.78 365.75 -9.33 -42.11 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.68 Total: 0.37 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -0.89 Total: -11.92 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.33 Total: -44.47 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.78 -9.33 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.839 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds