Wall clock time and date at job start Tue Mar 31 2020 06:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46973 * 2 1 4 4 O 1.21274 * 120.00143 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99758 * 179.97438 * 3 2 1 6 6 C 1.46499 * 119.99776 * 180.02562 * 5 3 2 7 7 C 1.53124 * 109.52270 * 155.00572 * 6 5 3 8 8 C 1.53028 * 109.28071 * 177.55877 * 7 6 5 9 9 N 1.46844 * 109.52609 * 300.82158 * 8 7 6 10 10 C 1.46898 * 111.00329 * 185.83615 * 9 8 7 11 11 H 1.09002 * 109.46852 * 54.99867 * 10 9 8 12 12 C 1.53001 * 109.47501 * 295.00194 * 10 9 8 13 13 C 1.52997 * 109.47386 * 174.99954 * 10 9 8 14 14 C 1.53006 * 109.47127 * 295.00452 * 13 10 9 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 10 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47454 * 59.99696 * 19 17 15 21 21 H 1.48506 * 109.47297 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47261 * 299.99689 * 19 17 15 23 23 C 1.46848 * 111.19680 * 61.73905 * 9 8 7 24 24 C 1.53037 * 109.52567 * 298.25988 * 23 9 8 25 25 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.46795 * 299.99442 * 1 2 3 27 27 H 1.08996 * 109.47314 * 59.99264 * 1 2 3 28 28 H 1.09001 * 109.46601 * 240.00741 * 2 1 3 29 29 H 1.08995 * 109.46986 * 120.00308 * 2 1 3 30 30 H 0.97005 * 120.00021 * 0.02562 * 5 3 2 31 31 H 1.08996 * 109.57600 * 34.84869 * 6 5 3 32 32 H 1.09003 * 109.49890 * 57.61481 * 7 6 5 33 33 H 1.09001 * 109.49829 * 297.50402 * 7 6 5 34 34 H 1.08998 * 109.46495 * 180.80287 * 8 7 6 35 35 H 1.09001 * 109.46289 * 60.83456 * 8 7 6 36 36 H 1.08996 * 109.46972 * 59.99197 * 12 10 9 37 37 H 1.08993 * 109.47331 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.46791 * 300.00262 * 12 10 9 39 39 H 1.09001 * 109.47502 * 175.00609 * 13 10 9 40 40 H 1.09001 * 109.47289 * 55.00406 * 13 10 9 41 41 H 1.09001 * 109.47002 * 299.99574 * 14 13 10 42 42 H 1.08993 * 109.46955 * 60.00011 * 14 13 10 43 43 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.46433 * 58.27947 * 23 9 8 45 45 H 1.09006 * 109.46205 * 178.24252 * 23 9 8 46 46 H 1.08997 * 109.50227 * 299.23944 * 24 23 9 47 47 H 1.09002 * 109.50273 * 179.12248 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0483 0.0011 7 6 5.2493 3.0946 0.6114 8 6 5.7783 4.5294 0.5537 9 7 5.8171 4.9824 -0.8426 10 6 6.4488 6.3043 -0.9499 11 1 7.4369 6.2730 -0.4908 12 6 5.5850 7.3423 -0.2308 13 6 6.5837 6.6868 -2.4251 14 6 7.5474 5.7203 -3.1166 15 6 7.6808 6.0975 -4.5695 16 1 7.1327 6.9419 -4.9607 17 6 8.5017 5.3640 -5.3996 18 7 9.1687 4.3355 -4.9235 19 14 8.6664 5.8311 -7.2007 20 1 9.1934 7.2154 -7.3070 21 1 9.6018 4.8931 -7.8719 22 1 7.3355 5.7566 -7.8553 23 6 4.4736 4.9916 -1.4353 24 6 3.9056 3.5705 -1.4370 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9878 0.9298 0.0005 31 1 3.1726 3.6734 0.5879 32 1 5.9130 2.4390 0.0476 33 1 5.2059 2.7641 1.6492 34 1 6.7832 4.5632 0.9745 35 1 5.1217 5.1820 1.1291 36 1 5.4888 7.0697 0.8201 37 1 6.0540 8.3230 -0.3101 38 1 4.5968 7.3735 -0.6899 39 1 6.9702 7.7030 -2.5031 40 1 5.6069 6.6318 -2.9056 41 1 8.5243 5.7754 -2.6362 42 1 7.1609 4.7041 -3.0387 43 1 9.7459 3.8192 -5.5075 44 1 3.8231 5.6420 -0.8507 45 1 4.5309 5.3610 -2.4593 46 1 4.5482 2.9225 -2.0330 47 1 2.9022 3.5802 -1.8628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:27 Heat of formation + Delta-G solvation = -60.497437 kcal Electronic energy + Delta-G solvation = -23061.409915 eV Core-core repulsion = 19856.952434 eV Total energy + Delta-G solvation = -3204.457481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.15828 -38.91083 -35.94248 -33.64130 -33.01413 -32.32102 -30.77041 -29.97832 -28.59151 -25.39287 -24.89219 -23.27570 -22.93278 -21.26014 -20.44041 -19.95107 -18.82096 -17.17635 -16.50051 -16.11364 -15.73759 -15.54138 -14.67324 -14.40141 -14.31124 -14.14047 -13.75496 -13.55506 -13.34734 -12.83107 -12.61905 -12.54771 -12.22404 -11.96069 -11.86623 -11.82509 -11.65533 -11.39876 -11.37449 -11.02444 -11.00543 -10.79972 -10.62255 -10.45481 -10.37158 -10.06773 -9.81594 -9.59245 -9.19056 -9.02113 -8.88651 -8.23363 -7.75281 -5.88773 -3.90083 2.57364 3.10583 3.38248 3.42414 3.45132 4.24521 4.53746 4.55101 4.77208 4.85733 4.87653 4.98791 5.15394 5.31478 5.33137 5.46228 5.46965 5.47418 5.53782 5.57637 5.64406 5.70500 5.72350 5.74668 5.82561 5.95433 6.00202 6.02136 6.14462 6.18724 6.31366 6.32766 6.36860 6.48740 6.56216 6.69133 6.90494 7.28887 7.43303 7.56393 7.59684 7.84690 8.06876 8.16842 8.21762 8.56909 9.18658 9.72574 11.22093 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017011 B = 0.003777 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.611348 B = 7410.710759 C = 8364.544869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.146 4.146 3 C 0.509 3.491 4 O -0.544 6.544 5 N -0.726 5.726 6 C 0.145 3.855 7 C -0.122 4.122 8 C 0.058 3.942 9 N -0.518 5.518 10 C 0.082 3.918 11 H 0.078 0.922 12 C -0.186 4.186 13 C -0.105 4.105 14 C 0.031 3.969 15 C -0.520 4.520 16 H 0.050 0.950 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C 0.055 3.945 24 C -0.124 4.124 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.400 0.600 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.009 0.991 42 H 0.031 0.969 43 H 0.258 0.742 44 H 0.029 0.971 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.815 -7.176 13.800 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 C 0.296 3.704 4 O -0.421 6.421 5 N -0.377 5.377 6 C 0.041 3.959 7 C -0.160 4.160 8 C -0.070 4.070 9 N -0.242 5.242 10 C -0.026 4.026 11 H 0.096 0.904 12 C -0.245 4.245 13 C -0.143 4.143 14 C -0.006 4.006 15 C -0.558 4.558 16 H 0.068 0.932 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.073 4.073 24 C -0.163 4.163 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.234 0.766 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.027 0.973 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.974 -6.986 13.487 19.341 hybrid contribution 0.078 0.423 -0.614 0.749 sum -11.896 -6.563 12.873 18.716 Atomic orbital electron populations 1.21521 0.93129 1.01432 1.03352 1.21644 0.98637 0.94000 1.04276 1.20787 0.82263 0.91781 0.75566 1.90696 1.55328 1.46610 1.49427 1.46171 1.07063 1.09076 1.75383 1.21062 0.95197 0.82289 0.97392 1.21854 0.95271 0.98405 1.00490 1.21980 1.00590 0.94244 0.90216 1.62084 1.19625 1.26926 1.15519 1.21853 0.96768 0.85560 0.98388 0.90403 1.22512 1.01239 1.00695 1.00007 1.21771 1.00940 1.00000 0.91552 1.18984 0.93179 0.94988 0.93456 1.21312 1.25986 1.13325 0.95199 0.93203 1.24983 0.95940 0.95186 0.98228 1.69964 1.29256 1.18736 1.35431 0.86757 0.77822 0.78187 0.85770 1.20424 1.21397 1.20385 1.22088 0.88643 0.95418 1.01130 1.21955 1.01046 0.97281 0.96036 0.92201 0.92104 0.91941 0.88877 0.89097 0.76597 0.90102 0.90200 0.91520 0.90507 0.95136 0.93429 0.92313 0.92682 0.93289 0.93235 0.97264 0.95055 0.93202 0.95282 0.89203 0.90509 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.16 0.34 -0.78 16 2 C -0.15 -1.12 6.42 -27.88 -0.18 -1.30 16 3 C 0.51 5.90 7.80 -10.98 -0.09 5.82 16 4 O -0.54 -8.58 15.64 5.56 0.09 -8.49 16 5 N -0.73 -7.54 5.08 -53.69 -0.27 -7.82 16 6 C 0.14 1.79 2.52 -67.81 -0.17 1.62 16 7 C -0.12 -1.38 5.57 -26.65 -0.15 -1.53 16 8 C 0.06 0.77 5.02 -3.84 -0.02 0.75 16 9 N -0.52 -8.36 4.10 -226.70 -0.93 -9.29 16 10 C 0.08 1.39 2.35 -67.71 -0.16 1.23 16 11 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 12 C -0.19 -2.62 8.50 37.16 0.32 -2.30 16 13 C -0.10 -2.16 4.44 -26.73 -0.12 -2.27 16 14 C 0.03 0.80 4.86 -27.88 -0.14 0.67 16 15 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 19 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.06 0.87 4.64 -3.83 -0.02 0.85 16 24 C -0.12 -1.81 5.67 -26.65 -0.15 -1.96 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.55 8.10 -51.92 -0.42 0.13 16 27 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.40 3.09 8.61 -40.82 -0.35 2.74 16 31 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.03 0.38 6.73 -51.93 -0.35 0.03 16 36 H 0.05 0.61 6.65 -51.93 -0.35 0.26 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.78 6.52 -51.93 -0.34 0.44 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.01 6.05 -51.93 -0.31 0.70 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.03 0.87 7.75 -51.93 -0.40 0.47 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.03 0.44 6.62 -51.93 -0.34 0.09 16 45 H 0.09 1.59 5.93 -51.93 -0.31 1.28 16 46 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -32.76 362.80 -9.47 -42.22 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.60 Total: 0.24 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -0.94 Total: -12.86 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -0.47 Total: -43.55 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.76 -9.47 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.275 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds