Wall clock time and date at job start Tue Mar 31 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46813 * 2 1 4 4 O 1.21282 * 119.99997 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99815 * 180.02562 * 3 2 1 6 6 C 1.46501 * 119.99787 * 180.02562 * 5 3 2 7 7 C 1.53124 * 109.52145 * 85.31778 * 6 5 3 8 8 C 1.53039 * 109.27498 * 177.55744 * 7 6 5 9 9 N 1.46843 * 109.52391 * 300.81655 * 8 7 6 10 10 C 1.46901 * 111.00022 * 185.84211 * 9 8 7 11 11 H 1.09000 * 109.47018 * 185.79312 * 10 9 8 12 12 C 1.53004 * 109.47031 * 305.78980 * 10 9 8 13 13 C 1.52996 * 109.47329 * 65.79046 * 10 9 8 14 14 C 1.53001 * 109.46930 * 64.99922 * 13 10 9 15 15 C 1.50695 * 109.47344 * 180.02562 * 14 13 10 16 16 H 1.08004 * 119.99933 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00394 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00062 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00266 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47101 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47511 * 119.99536 * 19 17 15 22 22 H 1.48499 * 109.47189 * 240.00157 * 19 17 15 23 23 C 1.46854 * 111.19690 * 61.74512 * 9 8 7 24 24 C 1.53029 * 109.52283 * 298.25524 * 23 9 8 25 25 H 1.08993 * 109.47126 * 299.99754 * 1 2 3 26 26 H 1.09003 * 109.47296 * 60.00118 * 1 2 3 27 27 H 1.09004 * 109.46579 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47172 * 240.00432 * 2 1 3 29 29 H 1.08996 * 109.47725 * 120.00399 * 2 1 3 30 30 H 0.97003 * 119.99706 * 359.97438 * 5 3 2 31 31 H 1.08998 * 109.57436 * 325.15457 * 6 5 3 32 32 H 1.08997 * 109.50088 * 297.49652 * 7 6 5 33 33 H 1.09004 * 109.50324 * 57.61826 * 7 6 5 34 34 H 1.09001 * 109.45805 * 180.80724 * 8 7 6 35 35 H 1.08997 * 109.46104 * 60.83468 * 8 7 6 36 36 H 1.09000 * 109.46948 * 60.00289 * 12 10 9 37 37 H 1.08994 * 109.47144 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.47370 * 300.00481 * 12 10 9 39 39 H 1.09004 * 109.47379 * 184.99868 * 13 10 9 40 40 H 1.09001 * 109.47110 * 305.00211 * 13 10 9 41 41 H 1.09000 * 109.47349 * 300.00571 * 14 13 10 42 42 H 1.09001 * 109.46988 * 60.00214 * 14 13 10 43 43 H 0.96996 * 120.00312 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.45788 * 178.23958 * 23 9 8 45 45 H 1.09003 * 109.45264 * 58.26841 * 23 9 8 46 46 H 1.08994 * 109.50822 * 299.23828 * 24 23 9 47 47 H 1.09001 * 109.50199 * 179.11868 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8456 3.0484 0.0000 7 6 3.9058 3.5693 1.4387 8 6 4.4738 4.9904 1.4382 9 7 5.8171 4.9818 0.8452 10 6 6.4489 6.3035 0.9536 11 1 7.3979 6.2977 0.4174 12 6 5.5260 7.3614 0.3451 13 6 6.6977 6.6306 2.4273 14 6 7.7175 5.6461 3.0031 15 6 7.9622 5.9677 4.4548 16 1 7.4420 6.7918 4.9204 17 6 8.8501 5.2102 5.1887 18 7 9.4833 4.2065 4.6220 19 14 9.1528 5.6085 6.9885 20 1 8.3233 6.7752 7.3835 21 1 8.7880 4.4359 7.8232 22 1 10.5883 5.9317 7.1893 23 6 5.7781 4.5300 -0.5516 24 6 5.2491 3.0953 -0.6105 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9877 0.9299 -0.0005 31 1 3.1724 3.6740 -0.5860 32 1 2.9025 3.5785 1.8646 33 1 4.5486 2.9207 2.0340 34 1 4.5313 5.3588 2.4624 35 1 3.8231 5.6412 0.8542 36 1 4.5770 7.3672 0.8813 37 1 5.9945 8.3421 0.4260 38 1 5.3487 7.1283 -0.7048 39 1 7.0841 7.6462 2.5139 40 1 5.7620 6.5494 2.9805 41 1 7.3312 4.6305 2.9164 42 1 8.6532 5.7272 2.4499 43 1 10.1077 3.6733 5.1383 44 1 6.7829 4.5643 -0.9725 45 1 5.1212 5.1832 -1.1261 46 1 5.9129 2.4392 -0.0475 47 1 5.2055 2.7658 -1.6486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:30 Heat of formation + Delta-G solvation = -61.225215 kcal Electronic energy + Delta-G solvation = -23041.219802 eV Core-core repulsion = 19836.730762 eV Total energy + Delta-G solvation = -3204.489040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.15954 -38.90243 -35.94057 -33.64975 -33.01691 -32.32607 -30.75088 -30.00614 -28.58933 -25.39226 -24.88499 -23.29568 -22.93385 -21.26517 -20.43948 -19.93071 -18.85209 -17.18284 -16.49723 -16.11457 -15.74196 -15.53900 -14.69102 -14.38751 -14.31044 -14.14470 -13.77130 -13.52858 -13.33063 -12.80458 -12.63247 -12.57089 -12.23496 -11.96482 -11.88079 -11.84678 -11.66885 -11.39614 -11.35769 -11.03526 -11.00983 -10.83274 -10.63012 -10.41933 -10.37894 -10.05860 -9.81903 -9.60196 -9.19140 -9.03168 -8.86898 -8.23733 -7.75187 -5.88941 -3.89909 2.56759 3.10140 3.35794 3.43255 3.47442 4.23809 4.53869 4.54681 4.76969 4.85259 4.87369 4.97955 5.15332 5.31125 5.32539 5.45579 5.46667 5.47169 5.53539 5.57366 5.63866 5.70086 5.71910 5.73871 5.82431 5.95007 5.99736 6.01747 6.13615 6.18817 6.29681 6.32897 6.37243 6.47702 6.55158 6.69017 6.90169 7.30029 7.42894 7.55931 7.59538 7.85431 8.07473 8.16272 8.22255 8.57406 9.19274 9.72818 11.22024 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017410 B = 0.003724 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.904834 B = 7517.792208 C = 8423.555440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.146 4.146 3 C 0.509 3.491 4 O -0.544 6.544 5 N -0.726 5.726 6 C 0.145 3.855 7 C -0.125 4.125 8 C 0.057 3.943 9 N -0.518 5.518 10 C 0.082 3.918 11 H 0.077 0.923 12 C -0.185 4.185 13 C -0.103 4.103 14 C 0.030 3.970 15 C -0.517 4.517 16 H 0.051 0.949 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.886 3.114 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.286 1.286 23 C 0.059 3.941 24 C -0.122 4.122 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.400 0.600 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.030 0.970 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.031 0.969 42 H 0.009 0.991 43 H 0.257 0.743 44 H 0.077 0.923 45 H 0.030 0.970 46 H 0.080 0.920 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.761 -6.766 -13.113 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 C 0.296 3.704 4 O -0.421 6.421 5 N -0.377 5.377 6 C 0.041 3.959 7 C -0.163 4.163 8 C -0.072 4.072 9 N -0.241 5.241 10 C -0.026 4.026 11 H 0.095 0.905 12 C -0.244 4.244 13 C -0.140 4.140 14 C -0.007 4.007 15 C -0.556 4.556 16 H 0.069 0.931 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.714 3.286 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.070 4.070 24 C -0.160 4.160 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.234 0.766 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.027 0.973 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.048 0.952 46 H 0.098 0.902 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.923 -6.568 -12.816 19.349 hybrid contribution 0.176 0.359 0.606 0.726 sum -12.747 -6.209 -12.210 18.711 Atomic orbital electron populations 1.21519 0.93128 1.01434 1.03346 1.21645 0.98633 0.93996 1.04287 1.20791 0.82262 0.91783 0.75558 1.90698 1.55327 1.46615 1.49449 1.46173 1.07064 1.09082 1.75367 1.21061 0.95224 0.82296 0.97348 1.21960 1.01017 0.97279 0.96094 1.22065 0.88744 0.95428 1.00915 1.62079 1.19522 1.27011 1.15538 1.21857 0.96267 0.85436 0.99013 0.90469 1.22512 1.01134 1.00631 1.00127 1.21729 1.00732 1.00078 0.91508 1.18991 0.92650 0.94932 0.94096 1.21386 1.23635 1.14238 0.96329 0.93105 1.24990 0.96197 0.95270 0.97959 1.69985 1.28215 1.19203 1.36001 0.86642 0.77854 0.78184 0.85926 1.19889 1.21149 1.21182 1.21980 1.00616 0.94243 0.90134 1.21854 0.95246 0.98417 1.00516 0.91950 0.92100 0.92200 0.89088 0.88877 0.76579 0.90096 0.91599 0.90507 0.89501 0.95183 0.92577 0.92313 0.93521 0.93337 0.93334 0.95020 0.97311 0.93333 0.90448 0.95228 0.90155 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.16 0.34 -0.77 16 2 C -0.15 -1.11 6.42 -27.88 -0.18 -1.29 16 3 C 0.51 5.87 7.80 -10.98 -0.09 5.78 16 4 O -0.54 -8.53 15.64 5.56 0.09 -8.44 16 5 N -0.73 -7.51 5.08 -53.68 -0.27 -7.79 16 6 C 0.15 1.79 2.52 -67.80 -0.17 1.61 16 7 C -0.12 -1.79 5.67 -26.65 -0.15 -1.94 16 8 C 0.06 0.88 4.55 -3.83 -0.02 0.86 16 9 N -0.52 -8.35 4.06 -226.69 -0.92 -9.27 16 10 C 0.08 1.39 2.31 -67.71 -0.16 1.23 16 11 H 0.08 1.33 7.99 -51.93 -0.41 0.92 16 12 C -0.19 -2.61 8.45 37.16 0.31 -2.29 16 13 C -0.10 -2.11 4.54 -26.73 -0.12 -2.23 16 14 C 0.03 0.79 4.86 -27.89 -0.14 0.65 16 15 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 16 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 19 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C 0.06 0.78 5.13 -3.83 -0.02 0.76 16 24 C -0.12 -1.39 5.57 -26.65 -0.15 -1.54 16 25 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 26 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.40 3.09 8.61 -40.82 -0.35 2.74 16 31 H 0.08 1.12 7.58 -51.93 -0.39 0.73 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.50 6.12 -51.93 -0.32 1.18 16 35 H 0.03 0.44 6.58 -51.93 -0.34 0.10 16 36 H 0.06 0.79 6.46 -51.93 -0.34 0.46 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.60 6.81 -51.93 -0.35 0.24 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 1.00 6.22 -51.93 -0.32 0.67 16 41 H 0.03 0.88 7.75 -51.93 -0.40 0.48 16 42 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.08 1.00 8.01 -51.93 -0.42 0.58 16 45 H 0.03 0.37 6.87 -51.93 -0.36 0.02 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -32.82 363.19 -9.47 -42.30 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -8.62 Total: -0.01 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.94 Total: -12.80 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.46 Total: -43.49 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.82 -9.47 -42.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.929 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds