Wall clock time and date at job start Tue Mar 31 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47238 * 2 1 4 4 O 1.21281 * 119.99803 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99754 * 179.97438 * 3 2 1 6 6 C 1.46502 * 119.99668 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.50475 * 34.91934 * 6 5 3 8 8 C 1.53119 * 109.53430 * 274.82295 * 6 5 3 9 9 C 1.53125 * 109.16129 * 182.38416 * 8 6 5 10 10 C 1.53039 * 109.27480 * 57.65337 * 9 8 6 11 11 N 1.46839 * 109.52608 * 300.82109 * 10 9 8 12 12 C 1.46898 * 111.00188 * 185.83928 * 11 10 9 13 13 H 1.08996 * 109.47190 * 293.72680 * 12 11 10 14 14 C 1.52998 * 109.47300 * 173.72595 * 12 11 10 15 15 C 1.53001 * 109.47043 * 53.72935 * 12 11 10 16 16 C 1.52999 * 109.47303 * 182.36047 * 15 12 11 17 17 C 1.50701 * 109.47383 * 174.79591 * 16 15 12 18 18 H 1.08003 * 119.99556 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00085 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00151 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00057 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47112 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47339 * 119.99496 * 21 19 17 24 24 H 1.48496 * 109.47335 * 239.99891 * 21 19 17 25 25 C 1.46850 * 111.19687 * 61.74272 * 11 10 9 26 26 H 1.09002 * 109.47149 * 60.00311 * 1 2 3 27 27 H 1.08996 * 109.47455 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47176 * 300.00369 * 1 2 3 29 29 H 1.09003 * 109.47324 * 239.99730 * 2 1 3 30 30 H 1.09002 * 109.47149 * 119.99688 * 2 1 3 31 31 H 0.96998 * 120.00578 * 0.02562 * 5 3 2 32 32 H 1.08998 * 109.52619 * 302.29036 * 8 6 5 33 33 H 1.09001 * 109.52433 * 62.48048 * 8 6 5 34 34 H 1.09001 * 109.50244 * 177.59408 * 9 8 6 35 35 H 1.09000 * 109.50061 * 297.67529 * 9 8 6 36 36 H 1.08997 * 109.45875 * 180.80271 * 10 9 8 37 37 H 1.09001 * 109.46405 * 60.84166 * 10 9 8 38 38 H 1.09002 * 109.47199 * 180.02562 * 14 12 11 39 39 H 1.09005 * 109.47328 * 300.00201 * 14 12 11 40 40 H 1.08997 * 109.47272 * 60.00191 * 14 12 11 41 41 H 1.09005 * 109.46690 * 302.35472 * 15 12 11 42 42 H 1.08998 * 109.47287 * 62.35869 * 15 12 11 43 43 H 1.08997 * 109.47077 * 294.80067 * 16 15 12 44 44 H 1.09008 * 109.47223 * 54.79328 * 16 15 12 45 45 H 0.96997 * 120.00388 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.46401 * 58.27849 * 25 11 10 47 47 H 1.09007 * 109.46324 * 178.24452 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1725 3.6726 0.5874 8 6 3.9028 3.5706 -1.4383 9 6 4.4701 4.9928 -1.4344 10 6 5.8546 4.9827 -0.7824 11 7 5.7465 4.4759 0.5915 12 6 7.0321 4.5815 1.2943 13 1 7.7558 3.9112 0.8307 14 6 6.8443 4.1927 2.7621 15 6 7.5429 6.0212 1.2095 16 6 8.9095 6.1185 1.8905 17 6 9.4702 7.5038 1.6963 18 1 8.9081 8.2409 1.1421 19 6 10.7011 7.8297 2.2251 20 7 11.3857 6.9319 2.8995 21 14 11.3963 9.5466 1.9837 22 1 10.4384 10.3621 1.1946 23 1 11.6153 10.1827 3.3076 24 1 12.6881 9.4598 1.2564 25 6 5.2484 3.0945 0.6102 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9878 0.9298 0.0005 32 1 4.5454 2.9237 -2.0356 33 1 2.8987 3.5801 -1.8624 34 1 4.5531 5.3543 -2.4593 35 1 3.8063 5.6478 -0.8700 36 1 6.2553 5.9962 -0.7652 37 1 6.5214 4.3385 -1.3557 38 1 7.7982 4.2715 3.2838 39 1 6.1205 4.8630 3.2259 40 1 6.4804 3.1671 2.8227 41 1 7.6368 6.3123 0.1633 42 1 6.8394 6.6865 1.7100 43 1 8.7996 5.9171 2.9561 44 1 9.5876 5.3871 1.4506 45 1 12.2514 7.1613 3.2719 46 1 5.9180 2.4591 0.0304 47 1 5.2088 2.7366 1.6391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172508978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:40 Heat of formation + Delta-G solvation = -61.719741 kcal Electronic energy + Delta-G solvation = -22702.560548 eV Core-core repulsion = 19498.050064 eV Total energy + Delta-G solvation = -3204.510484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.26266 -38.88871 -35.90712 -34.01619 -33.11132 -32.79982 -31.07385 -29.69448 -28.43840 -25.52588 -24.77902 -24.03962 -22.35851 -21.49876 -20.50759 -19.90573 -19.14609 -17.35588 -16.77595 -16.09381 -15.85386 -15.43072 -14.77388 -14.61189 -14.26700 -14.17785 -14.00674 -13.58047 -13.47085 -13.18737 -12.89489 -12.57666 -12.33264 -12.11203 -12.04133 -11.68854 -11.48590 -11.41448 -11.22749 -11.17559 -11.02316 -10.93017 -10.66597 -10.52720 -10.40097 -10.10676 -9.93340 -9.57909 -9.33894 -9.16075 -8.99260 -8.33246 -8.07463 -5.99452 -4.01076 2.46857 2.92401 3.31353 3.38962 3.43366 4.12756 4.45245 4.47294 4.70214 4.74362 4.80803 4.83257 5.01318 5.15604 5.21899 5.31212 5.36519 5.45521 5.48238 5.56378 5.58389 5.61621 5.63537 5.73117 5.88171 5.91855 5.93745 5.99661 6.03074 6.18613 6.25100 6.31038 6.38160 6.40992 6.63883 6.74035 6.77028 7.12063 7.29566 7.37144 7.44105 7.69490 7.84765 8.01095 8.05978 8.44817 9.06302 9.62870 11.11921 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040975 B = 0.002822 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.179317 B = 9918.548082 C =10331.577132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.511 3.489 4 O -0.539 6.539 5 N -0.728 5.728 6 C 0.147 3.853 7 H 0.096 0.904 8 C -0.128 4.128 9 C -0.113 4.113 10 C 0.047 3.953 11 N -0.530 5.530 12 C 0.084 3.916 13 H 0.035 0.965 14 C -0.142 4.142 15 C -0.105 4.105 16 C 0.023 3.977 17 C -0.517 4.517 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.048 3.952 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.398 0.602 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.030 0.970 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.020 0.980 44 H 0.012 0.988 45 H 0.259 0.741 46 H 0.032 0.968 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.698 -15.161 -7.179 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.297 3.703 4 O -0.415 6.415 5 N -0.379 5.379 6 C 0.042 3.958 7 H 0.114 0.886 8 C -0.166 4.166 9 C -0.152 4.152 10 C -0.080 4.080 11 N -0.255 5.255 12 C -0.024 4.024 13 H 0.053 0.947 14 C -0.199 4.199 15 C -0.143 4.143 16 C -0.015 4.015 17 C -0.556 4.556 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.081 4.081 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.232 0.768 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.030 0.970 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.448 -14.216 -6.829 23.519 hybrid contribution 1.544 -0.034 -0.546 1.638 sum -15.903 -14.251 -7.375 22.592 Atomic orbital electron populations 1.21523 0.93028 1.01500 1.03423 1.21645 0.98718 0.93888 1.04257 1.20779 0.82104 0.91823 0.75567 1.90713 1.55219 1.46563 1.49054 1.46102 1.07169 1.08956 1.75714 1.20976 0.95781 0.82167 0.96833 0.88551 1.21950 1.01284 0.97077 0.96321 1.21552 0.96867 0.96255 1.00495 1.22232 0.96116 1.01596 0.88089 1.61914 1.29422 1.18590 1.15573 1.21782 0.87256 0.99252 0.94066 0.94660 1.21891 1.02732 0.99655 0.95657 1.21795 0.99532 0.92243 1.00697 1.19131 0.89787 0.96748 0.95811 1.21298 1.02845 0.97607 1.33805 0.92692 1.25022 0.97104 0.97088 0.95326 1.69970 1.13525 1.33753 1.36335 0.86558 0.78937 0.84782 0.77865 1.19739 1.21027 1.21097 1.22279 0.93888 0.90887 1.01059 0.92016 0.92156 0.91925 0.89048 0.88947 0.76827 0.92350 0.91630 0.91383 0.90850 0.89146 0.95177 0.91029 0.92148 0.94026 0.93079 0.92532 0.96156 0.96959 0.93124 0.94972 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.20 37.16 0.34 -0.64 16 2 C -0.14 -0.94 6.42 -27.88 -0.18 -1.12 16 3 C 0.51 5.30 7.80 -10.98 -0.09 5.21 16 4 O -0.54 -7.92 15.64 5.56 0.09 -7.83 16 5 N -0.73 -6.66 5.08 -53.73 -0.27 -6.93 16 6 C 0.15 1.69 2.62 -67.85 -0.18 1.52 16 7 H 0.10 1.37 7.58 -51.93 -0.39 0.97 16 8 C -0.13 -1.44 5.58 -26.60 -0.15 -1.59 16 9 C -0.11 -1.34 6.09 -26.65 -0.16 -1.51 16 10 C 0.05 0.65 5.09 -3.84 -0.02 0.63 16 11 N -0.53 -7.78 4.52 -226.70 -1.03 -8.80 16 12 C 0.08 1.42 2.18 -67.71 -0.15 1.27 16 13 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 14 C -0.14 -2.29 8.73 37.16 0.32 -1.97 16 15 C -0.10 -2.14 4.31 -26.73 -0.12 -2.26 16 16 C 0.02 0.58 4.53 -27.88 -0.13 0.45 16 17 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 18 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 21 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.05 0.58 4.72 -3.83 -0.02 0.56 16 26 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.40 2.52 8.60 -40.82 -0.35 2.17 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.36 5.81 -51.93 -0.30 1.06 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 1.27 6.60 -51.93 -0.34 0.93 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.57 6.32 -51.93 -0.33 0.24 16 41 H 0.05 1.03 6.06 -51.93 -0.31 0.72 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.02 0.54 6.76 -51.93 -0.35 0.19 16 44 H 0.01 0.33 8.14 -51.92 -0.42 -0.10 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.98 6.07 -51.93 -0.32 0.67 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -32.02 363.14 -9.53 -41.55 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.58 Total: -1.19 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -0.92 Total: -12.86 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.56 Total: -41.84 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.02 -9.53 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.172 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds