Wall clock time and date at job start Tue Mar 31 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47461 * 2 1 4 4 O 1.21292 * 119.99729 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00345 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99913 * 179.97438 * 5 3 2 7 7 H 1.08992 * 109.50496 * 35.07889 * 6 5 3 8 8 C 1.53117 * 109.50363 * 275.00123 * 6 5 3 9 9 C 1.53114 * 109.16110 * 182.36782 * 8 6 5 10 10 C 1.53040 * 109.27790 * 57.65512 * 9 8 6 11 11 N 1.46843 * 109.52357 * 300.81816 * 10 9 8 12 12 C 1.46900 * 111.00264 * 185.84137 * 11 10 9 13 13 H 1.08996 * 109.47541 * 186.05011 * 12 11 10 14 14 C 1.53008 * 109.46845 * 306.04646 * 12 11 10 15 15 C 1.52996 * 109.47087 * 66.04543 * 12 11 10 16 16 C 1.52997 * 109.46947 * 65.00186 * 15 12 11 17 17 C 1.50706 * 109.47238 * 179.97438 * 16 15 12 18 18 H 1.07999 * 119.99515 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00176 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00200 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00139 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47145 * 89.99836 * 21 19 17 23 23 H 1.48496 * 109.47547 * 210.00333 * 21 19 17 24 24 H 1.48499 * 109.47030 * 330.00237 * 21 19 17 25 25 C 1.46852 * 111.19430 * 61.74196 * 11 10 9 26 26 H 1.08997 * 109.47387 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47451 * 299.99931 * 1 2 3 28 28 H 1.09004 * 109.47170 * 60.00475 * 1 2 3 29 29 H 1.08998 * 109.47422 * 239.99293 * 2 1 3 30 30 H 1.09007 * 109.46983 * 120.00020 * 2 1 3 31 31 H 0.96994 * 119.99777 * 0.02562 * 5 3 2 32 32 H 1.09000 * 109.52610 * 62.45896 * 8 6 5 33 33 H 1.09004 * 109.52467 * 302.27091 * 8 6 5 34 34 H 1.08996 * 109.50835 * 297.71321 * 9 8 6 35 35 H 1.09005 * 109.53515 * 177.61221 * 9 8 6 36 36 H 1.09008 * 109.45775 * 180.80526 * 10 9 8 37 37 H 1.08998 * 109.45662 * 60.83626 * 10 9 8 38 38 H 1.08992 * 109.47388 * 300.00067 * 14 12 11 39 39 H 1.09009 * 109.46555 * 60.00143 * 14 12 11 40 40 H 1.08993 * 109.46824 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.47372 * 305.00495 * 15 12 11 42 42 H 1.09004 * 109.47108 * 185.00240 * 15 12 11 43 43 H 1.09001 * 109.46832 * 59.99979 * 16 15 12 44 44 H 1.09000 * 109.47611 * 300.00276 * 16 15 12 45 45 H 0.96999 * 120.00061 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.45938 * 58.27966 * 25 11 10 47 47 H 1.09000 * 109.46040 * 178.24197 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8457 3.0482 0.0000 7 1 3.1741 3.6719 0.5897 8 6 3.8982 3.5713 -1.4381 9 6 4.4650 4.9937 -1.4352 10 6 5.8516 4.9837 -0.7875 11 7 5.7477 4.4762 0.5865 12 6 7.0354 4.5820 1.2856 13 1 6.9595 4.1025 2.2615 14 6 8.1220 3.8896 0.4604 15 6 7.3965 6.0574 1.4689 16 6 6.3765 6.7205 2.3967 17 6 6.7325 8.1737 2.5778 18 1 7.5993 8.5833 2.0805 19 6 5.9517 8.9802 3.3783 20 7 6.2621 10.2484 3.5359 21 14 4.4521 8.2719 4.2379 22 1 4.8458 7.7519 5.5720 23 1 3.4282 9.3346 4.4032 24 1 3.8901 7.1658 3.4218 25 6 5.2502 3.0947 0.6060 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.9877 0.9297 0.0005 32 1 2.8929 3.5806 -1.8593 33 1 4.5393 2.9250 -2.0377 34 1 3.8032 5.6481 -0.8680 35 1 4.5447 5.3564 -2.4600 36 1 6.2519 5.9975 -0.7709 37 1 6.5166 4.3400 -1.3632 38 1 7.8648 2.8386 0.3298 39 1 8.1979 4.3692 -0.5156 40 1 9.0775 3.9685 0.9789 41 1 7.3854 6.5572 0.5003 42 1 8.3914 6.1362 1.9071 43 1 6.3876 6.2207 3.3653 44 1 5.3816 6.6417 1.9586 45 1 5.7125 10.8159 4.0988 46 1 5.9182 2.4598 0.0239 47 1 5.2138 2.7363 1.6348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172508979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:42 Heat of formation + Delta-G solvation = -57.285619 kcal Electronic energy + Delta-G solvation = -23228.444371 eV Core-core repulsion = 20024.126165 eV Total energy + Delta-G solvation = -3204.318206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25818 -39.00909 -35.91913 -33.82788 -33.03791 -32.68870 -31.06071 -29.62648 -28.98497 -25.50223 -24.97581 -23.93582 -22.67357 -21.05663 -20.47498 -20.06490 -18.88950 -17.31188 -16.67296 -16.35454 -15.85012 -15.51273 -14.81669 -14.43912 -14.21039 -14.14618 -13.92459 -13.79859 -13.41555 -12.87871 -12.76432 -12.61742 -12.40025 -12.31683 -12.13141 -12.00738 -11.70472 -11.46758 -11.44491 -11.24177 -10.93371 -10.84364 -10.68504 -10.43064 -10.39966 -9.90855 -9.71541 -9.63167 -9.43869 -9.14474 -8.99416 -8.41507 -7.95672 -5.93105 -3.89521 2.51891 2.95873 3.41456 3.49231 3.58488 4.14900 4.49089 4.58195 4.72933 4.77645 4.83277 4.86503 5.06837 5.15140 5.24335 5.27349 5.34563 5.40705 5.42997 5.51087 5.52909 5.58390 5.65842 5.67548 5.69709 5.87752 5.94834 5.96359 6.06755 6.08494 6.18547 6.20545 6.28551 6.33457 6.47012 6.53310 6.70025 7.07225 7.31945 7.36012 7.40828 7.52398 7.73058 7.95308 8.11297 8.66248 9.12590 9.71322 11.20630 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.004328 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.481104 B = 6468.427719 C = 7439.337123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.509 3.491 4 O -0.536 6.536 5 N -0.728 5.728 6 C 0.145 3.855 7 H 0.098 0.902 8 C -0.125 4.125 9 C -0.116 4.116 10 C 0.050 3.950 11 N -0.518 5.518 12 C 0.080 3.920 13 H 0.077 0.923 14 C -0.184 4.184 15 C -0.094 4.094 16 C -0.007 4.007 17 C -0.517 4.517 18 H 0.067 0.933 19 C 0.065 3.935 20 N -0.909 5.909 21 Si 0.878 3.122 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.260 1.260 25 C 0.052 3.948 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.397 0.603 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.031 0.969 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.004 0.996 44 H 0.031 0.969 45 H 0.261 0.739 46 H 0.034 0.966 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 -23.394 -10.229 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.296 3.704 4 O -0.412 6.412 5 N -0.380 5.380 6 C 0.040 3.960 7 H 0.116 0.884 8 C -0.164 4.164 9 C -0.154 4.154 10 C -0.077 4.077 11 N -0.242 5.242 12 C -0.028 4.028 13 H 0.096 0.904 14 C -0.243 4.243 15 C -0.131 4.131 16 C -0.044 4.044 17 C -0.555 4.555 18 H 0.086 0.914 19 C -0.135 4.135 20 N -0.549 5.549 21 Si 0.705 3.295 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.184 1.184 25 C -0.077 4.077 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.022 0.978 44 H 0.049 0.951 45 H 0.070 0.930 46 H 0.052 0.948 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.118 -22.259 -9.883 24.886 hybrid contribution 0.253 -1.129 0.122 1.164 sum -4.865 -23.388 -9.761 25.806 Atomic orbital electron populations 1.21526 0.93030 1.01463 1.03497 1.21634 0.98733 0.93895 1.04151 1.20782 0.82140 0.91817 0.75685 1.90734 1.55185 1.46526 1.48776 1.46083 1.07134 1.08877 1.75868 1.20993 0.95830 0.82159 0.96980 0.88367 1.21926 1.01296 0.97017 0.96156 1.21559 0.97040 0.96271 1.00554 1.22200 0.96277 1.01222 0.88038 1.61958 1.28076 1.18175 1.15971 1.21913 0.85719 0.98740 0.96392 0.90446 1.22487 1.00497 0.99826 1.01454 1.21548 0.99785 0.91053 1.00740 1.19480 0.95715 0.95379 0.93827 1.21236 1.12501 0.93045 1.28747 0.91441 1.25013 0.97546 0.94670 0.96317 1.69928 1.39685 1.05489 1.39809 0.86798 0.83260 0.79209 0.80228 1.20618 1.21692 1.18410 1.22214 0.93949 0.90857 1.00682 0.92186 0.91886 0.91990 0.89110 0.89010 0.76976 0.91619 0.92520 0.90478 0.91400 0.89338 0.95060 0.93561 0.92375 0.92083 0.92630 0.92618 0.97770 0.95074 0.92961 0.94838 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.20 37.16 0.34 -0.74 16 2 C -0.14 -1.02 6.42 -27.89 -0.18 -1.19 16 3 C 0.51 5.69 7.80 -10.99 -0.09 5.61 16 4 O -0.54 -8.53 15.65 5.55 0.09 -8.44 16 5 N -0.73 -7.04 5.08 -53.73 -0.27 -7.31 16 6 C 0.14 1.79 2.61 -67.85 -0.18 1.62 16 7 H 0.10 1.57 7.58 -51.93 -0.39 1.18 16 8 C -0.13 -1.49 5.58 -26.61 -0.15 -1.64 16 9 C -0.12 -1.51 6.09 -26.65 -0.16 -1.67 16 10 C 0.05 0.69 4.54 -3.83 -0.02 0.68 16 11 N -0.52 -7.76 4.06 -226.69 -0.92 -8.68 16 12 C 0.08 1.24 2.31 -67.71 -0.16 1.08 16 13 H 0.08 1.21 7.98 -51.93 -0.41 0.79 16 14 C -0.18 -2.28 8.45 37.16 0.31 -1.97 16 15 C -0.09 -1.81 4.55 -26.73 -0.12 -1.93 16 16 C -0.01 -0.16 3.93 -27.88 -0.11 -0.27 16 17 C -0.52 -15.05 9.66 -34.44 -0.33 -15.39 16 18 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 19 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.91 -28.86 13.96 55.43 0.77 -28.09 16 21 Si 0.88 22.76 27.47 -169.99 -4.67 18.09 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 25 C 0.05 0.63 4.61 -3.83 -0.02 0.61 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.40 2.56 8.60 -40.82 -0.35 2.21 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.38 6.13 -51.92 -0.32 1.06 16 37 H 0.03 0.39 6.58 -51.93 -0.34 0.05 16 38 H 0.05 0.50 6.82 -51.93 -0.35 0.15 16 39 H 0.06 0.72 6.46 -51.92 -0.34 0.38 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.08 6.23 -51.93 -0.32 0.76 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.00 0.10 7.57 -51.93 -0.39 -0.30 16 44 H 0.03 0.78 6.81 -51.93 -0.35 0.43 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 46 H 0.03 0.35 6.88 -51.93 -0.36 -0.01 16 47 H 0.08 0.92 8.01 -51.93 -0.42 0.51 16 LS Contribution 359.61 15.07 5.42 5.42 Total: -1.00 -34.01 359.61 -9.12 -43.13 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.58 Total: -0.76 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -0.95 Total: -13.36 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.42 Total: -44.08 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.67 Total: 18.09 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.01 -9.12 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.156 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds